co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090615: mitochondrial mRNA processing	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0009606: tropism	0.00E+00
5	GO:0009451: RNA modification	1.27E-05
6	GO:0042793: transcription from plastid promoter	2.64E-05
7	GO:1901259: chloroplast rRNA processing	3.74E-05
8	GO:1903866: palisade mesophyll development	1.10E-04
9	GO:0010063: positive regulation of trichoblast fate specification	1.10E-04
10	GO:1900865: chloroplast RNA modification	1.24E-04
11	GO:0006420: arginyl-tRNA aminoacylation	2.57E-04
12	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.57E-04
13	GO:0010569: regulation of double-strand break repair via homologous recombination	2.57E-04
14	GO:0010541: acropetal auxin transport	2.57E-04
15	GO:0018026: peptidyl-lysine monomethylation	2.57E-04
16	GO:1904143: positive regulation of carotenoid biosynthetic process	2.57E-04
17	GO:0080009: mRNA methylation	2.57E-04
18	GO:0030029: actin filament-based process	4.25E-04
19	GO:0090391: granum assembly	4.25E-04
20	GO:0006518: peptide metabolic process	4.25E-04
21	GO:0010371: regulation of gibberellin biosynthetic process	6.10E-04
22	GO:0010071: root meristem specification	6.10E-04
23	GO:0010239: chloroplast mRNA processing	6.10E-04
24	GO:0010305: leaf vascular tissue pattern formation	7.18E-04
25	GO:1900864: mitochondrial RNA modification	8.10E-04
26	GO:0048497: maintenance of floral organ identity	1.02E-03
27	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.25E-03
28	GO:0042549: photosystem II stabilization	1.25E-03
29	GO:0016554: cytidine to uridine editing	1.25E-03
30	GO:0010315: auxin efflux	1.25E-03
31	GO:0009913: epidermal cell differentiation	1.25E-03
32	GO:0010027: thylakoid membrane organization	1.25E-03
33	GO:0009734: auxin-activated signaling pathway	1.37E-03
34	GO:0009955: adaxial/abaxial pattern specification	1.49E-03
35	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.49E-03
36	GO:0048437: floral organ development	1.75E-03
37	GO:0009416: response to light stimulus	1.95E-03
38	GO:0042255: ribosome assembly	2.03E-03
39	GO:0006353: DNA-templated transcription, termination	2.03E-03
40	GO:0048766: root hair initiation	2.03E-03
41	GO:0001522: pseudouridine synthesis	2.03E-03
42	GO:0009658: chloroplast organization	2.13E-03
43	GO:0019430: removal of superoxide radicals	2.32E-03
44	GO:0032544: plastid translation	2.32E-03
45	GO:0007389: pattern specification process	2.32E-03
46	GO:0008283: cell proliferation	2.61E-03
47	GO:0000902: cell morphogenesis	2.62E-03
48	GO:0000373: Group II intron splicing	2.62E-03
49	GO:0016571: histone methylation	2.93E-03
50	GO:0016573: histone acetylation	2.93E-03
51	GO:0006949: syncytium formation	3.25E-03
52	GO:0031627: telomeric loop formation	3.25E-03
53	GO:0048829: root cap development	3.25E-03
54	GO:0006364: rRNA processing	3.51E-03
55	GO:0009736: cytokinin-activated signaling pathway	3.51E-03
56	GO:0046856: phosphatidylinositol dephosphorylation	3.59E-03
57	GO:0048367: shoot system development	4.28E-03
58	GO:0009691: cytokinin biosynthetic process	4.30E-03
59	GO:0010540: basipetal auxin transport	4.66E-03
60	GO:0009266: response to temperature stimulus	4.66E-03
61	GO:0080188: RNA-directed DNA methylation	5.04E-03
62	GO:0006338: chromatin remodeling	5.84E-03
63	GO:2000377: regulation of reactive oxygen species metabolic process	5.84E-03
64	GO:0019953: sexual reproduction	6.25E-03
65	GO:0010431: seed maturation	6.67E-03
66	GO:0003333: amino acid transmembrane transport	6.67E-03
67	GO:0009845: seed germination	6.74E-03
68	GO:0010082: regulation of root meristem growth	7.55E-03
69	GO:0042127: regulation of cell proliferation	8.00E-03
70	GO:0008033: tRNA processing	8.93E-03
71	GO:0009741: response to brassinosteroid	9.41E-03
72	GO:0071472: cellular response to salt stress	9.41E-03
73	GO:0009958: positive gravitropism	9.41E-03
74	GO:0007018: microtubule-based movement	9.91E-03
75	GO:0009646: response to absence of light	9.91E-03
76	GO:0008380: RNA splicing	1.03E-02
77	GO:0009851: auxin biosynthetic process	1.04E-02
78	GO:0048825: cotyledon development	1.04E-02
79	GO:0080156: mitochondrial mRNA modification	1.09E-02
80	GO:0032502: developmental process	1.14E-02
81	GO:0009630: gravitropism	1.14E-02
82	GO:0010583: response to cyclopentenone	1.14E-02
83	GO:0010252: auxin homeostasis	1.25E-02
84	GO:0009828: plant-type cell wall loosening	1.25E-02
85	GO:0048366: leaf development	1.57E-02
86	GO:0048481: plant ovule development	1.71E-02
87	GO:0048767: root hair elongation	1.77E-02
88	GO:0000160: phosphorelay signal transduction system	1.77E-02
89	GO:0009910: negative regulation of flower development	1.89E-02
90	GO:0006865: amino acid transport	1.96E-02
91	GO:0032259: methylation	2.34E-02
92	GO:0009926: auxin polar transport	2.42E-02
93	GO:0048364: root development	2.55E-02
94	GO:0009664: plant-type cell wall organization	2.85E-02
95	GO:0006508: proteolysis	3.06E-02
96	GO:0006355: regulation of transcription, DNA-templated	3.31E-02
97	GO:0048316: seed development	3.45E-02
98	GO:0016569: covalent chromatin modification	3.69E-02
99	GO:0009742: brassinosteroid mediated signaling pathway	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0004519: endonuclease activity	1.12E-06
3	GO:0003723: RNA binding	5.05E-05
4	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.10E-04
5	GO:0052381: tRNA dimethylallyltransferase activity	1.10E-04
6	GO:0004222: metalloendopeptidase activity	1.57E-04
7	GO:0004814: arginine-tRNA ligase activity	2.57E-04
8	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.57E-04
9	GO:0016279: protein-lysine N-methyltransferase activity	8.10E-04
10	GO:0010328: auxin influx transmembrane transporter activity	8.10E-04
11	GO:0019843: rRNA binding	8.28E-04
12	GO:0004784: superoxide dismutase activity	1.25E-03
13	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.25E-03
14	GO:0009672: auxin:proton symporter activity	2.93E-03
15	GO:0003691: double-stranded telomeric DNA binding	3.59E-03
16	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.93E-03
17	GO:0009982: pseudouridine synthase activity	4.30E-03
18	GO:0010329: auxin efflux transmembrane transporter activity	4.30E-03
19	GO:0004176: ATP-dependent peptidase activity	6.67E-03
20	GO:0003727: single-stranded RNA binding	8.00E-03
21	GO:0003713: transcription coactivator activity	9.41E-03
22	GO:0001085: RNA polymerase II transcription factor binding	9.41E-03
23	GO:0000156: phosphorelay response regulator activity	1.20E-02
24	GO:0008168: methyltransferase activity	1.28E-02
25	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.30E-02
26	GO:0008237: metallopeptidase activity	1.30E-02
27	GO:0005200: structural constituent of cytoskeleton	1.30E-02
28	GO:0008375: acetylglucosaminyltransferase activity	1.53E-02
29	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.89E-02
30	GO:0051539: 4 iron, 4 sulfur cluster binding	2.22E-02
31	GO:0015293: symporter activity	2.63E-02
32	GO:0003690: double-stranded DNA binding	3.07E-02
33	GO:0003777: microtubule motor activity	3.22E-02
34	GO:0015171: amino acid transmembrane transporter activity	3.22E-02
35	GO:0004650: polygalacturonase activity	3.61E-02
36	GO:0016887: ATPase activity	3.78E-02
37	GO:0008026: ATP-dependent helicase activity	4.01E-02
38	GO:0004386: helicase activity	4.09E-02
39	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.95E-02