GO Enrichment Analysis of Co-expressed Genes with
AT1G78730
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 2 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 3 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 4 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 5 | GO:0009606: tropism | 0.00E+00 |
| 6 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 7 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 8 | GO:0080127: fruit septum development | 0.00E+00 |
| 9 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 10 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 11 | GO:1900864: mitochondrial RNA modification | 1.02E-07 |
| 12 | GO:0080188: RNA-directed DNA methylation | 2.33E-05 |
| 13 | GO:0042793: transcription from plastid promoter | 5.54E-05 |
| 14 | GO:0042255: ribosome assembly | 1.32E-04 |
| 15 | GO:0046620: regulation of organ growth | 1.32E-04 |
| 16 | GO:0006353: DNA-templated transcription, termination | 1.32E-04 |
| 17 | GO:0009658: chloroplast organization | 1.33E-04 |
| 18 | GO:0034757: negative regulation of iron ion transport | 1.73E-04 |
| 19 | GO:0043971: histone H3-K18 acetylation | 1.73E-04 |
| 20 | GO:1903866: palisade mesophyll development | 1.73E-04 |
| 21 | GO:0006355: regulation of transcription, DNA-templated | 3.27E-04 |
| 22 | GO:0010569: regulation of double-strand break repair via homologous recombination | 3.92E-04 |
| 23 | GO:2000071: regulation of defense response by callose deposition | 3.92E-04 |
| 24 | GO:0010271: regulation of chlorophyll catabolic process | 3.92E-04 |
| 25 | GO:1900033: negative regulation of trichome patterning | 3.92E-04 |
| 26 | GO:0080009: mRNA methylation | 3.92E-04 |
| 27 | GO:0080117: secondary growth | 6.40E-04 |
| 28 | GO:0090391: granum assembly | 6.40E-04 |
| 29 | GO:0030029: actin filament-based process | 6.40E-04 |
| 30 | GO:0080147: root hair cell development | 6.71E-04 |
| 31 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 9.13E-04 |
| 32 | GO:0090307: mitotic spindle assembly | 9.13E-04 |
| 33 | GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center | 9.13E-04 |
| 34 | GO:1902290: positive regulation of defense response to oomycetes | 9.13E-04 |
| 35 | GO:0031122: cytoplasmic microtubule organization | 1.21E-03 |
| 36 | GO:0010087: phloem or xylem histogenesis | 1.21E-03 |
| 37 | GO:0048629: trichome patterning | 1.21E-03 |
| 38 | GO:0010305: leaf vascular tissue pattern formation | 1.30E-03 |
| 39 | GO:0080110: sporopollenin biosynthetic process | 1.54E-03 |
| 40 | GO:0016131: brassinosteroid metabolic process | 1.54E-03 |
| 41 | GO:0080156: mitochondrial mRNA modification | 1.60E-03 |
| 42 | GO:0010315: auxin efflux | 1.89E-03 |
| 43 | GO:0009913: epidermal cell differentiation | 1.89E-03 |
| 44 | GO:0048831: regulation of shoot system development | 1.89E-03 |
| 45 | GO:0003006: developmental process involved in reproduction | 1.89E-03 |
| 46 | GO:0009643: photosynthetic acclimation | 1.89E-03 |
| 47 | GO:0048509: regulation of meristem development | 2.27E-03 |
| 48 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.27E-03 |
| 49 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.27E-03 |
| 50 | GO:0040008: regulation of growth | 2.56E-03 |
| 51 | GO:0006955: immune response | 2.67E-03 |
| 52 | GO:0006401: RNA catabolic process | 2.67E-03 |
| 53 | GO:0034968: histone lysine methylation | 3.09E-03 |
| 54 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 3.09E-03 |
| 55 | GO:0009642: response to light intensity | 3.09E-03 |
| 56 | GO:0048766: root hair initiation | 3.09E-03 |
| 57 | GO:0009827: plant-type cell wall modification | 3.54E-03 |
| 58 | GO:0007389: pattern specification process | 3.54E-03 |
| 59 | GO:0044030: regulation of DNA methylation | 3.54E-03 |
| 60 | GO:0009734: auxin-activated signaling pathway | 3.59E-03 |
| 61 | GO:0048507: meristem development | 4.00E-03 |
| 62 | GO:0048589: developmental growth | 4.00E-03 |
| 63 | GO:1900865: chloroplast RNA modification | 4.49E-03 |
| 64 | GO:0016571: histone methylation | 4.49E-03 |
| 65 | GO:0016573: histone acetylation | 4.49E-03 |
| 66 | GO:1900426: positive regulation of defense response to bacterium | 4.49E-03 |
| 67 | GO:0009926: auxin polar transport | 4.86E-03 |
| 68 | GO:0009733: response to auxin | 4.98E-03 |
| 69 | GO:0006535: cysteine biosynthetic process from serine | 4.99E-03 |
| 70 | GO:0048829: root cap development | 4.99E-03 |
| 71 | GO:0006949: syncytium formation | 4.99E-03 |
| 72 | GO:0009416: response to light stimulus | 5.09E-03 |
| 73 | GO:0006970: response to osmotic stress | 5.19E-03 |
| 74 | GO:0046856: phosphatidylinositol dephosphorylation | 5.52E-03 |
| 75 | GO:0009682: induced systemic resistance | 5.52E-03 |
| 76 | GO:0009750: response to fructose | 5.52E-03 |
| 77 | GO:0048765: root hair cell differentiation | 5.52E-03 |
| 78 | GO:0009793: embryo development ending in seed dormancy | 5.62E-03 |
| 79 | GO:0031347: regulation of defense response | 5.89E-03 |
| 80 | GO:0010582: floral meristem determinacy | 6.06E-03 |
| 81 | GO:0010152: pollen maturation | 6.06E-03 |
| 82 | GO:0010588: cotyledon vascular tissue pattern formation | 6.61E-03 |
| 83 | GO:0010102: lateral root morphogenesis | 6.61E-03 |
| 84 | GO:0048467: gynoecium development | 7.20E-03 |
| 85 | GO:0010020: chloroplast fission | 7.20E-03 |
| 86 | GO:0006270: DNA replication initiation | 7.20E-03 |
| 87 | GO:0009266: response to temperature stimulus | 7.20E-03 |
| 88 | GO:0048367: shoot system development | 8.00E-03 |
| 89 | GO:0019344: cysteine biosynthetic process | 9.03E-03 |
| 90 | GO:0006338: chromatin remodeling | 9.03E-03 |
| 91 | GO:2000377: regulation of reactive oxygen species metabolic process | 9.03E-03 |
| 92 | GO:0006281: DNA repair | 1.02E-02 |
| 93 | GO:0003333: amino acid transmembrane transport | 1.03E-02 |
| 94 | GO:0016998: cell wall macromolecule catabolic process | 1.03E-02 |
| 95 | GO:0048364: root development | 1.07E-02 |
| 96 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.10E-02 |
| 97 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.17E-02 |
| 98 | GO:0071215: cellular response to abscisic acid stimulus | 1.17E-02 |
| 99 | GO:0010082: regulation of root meristem growth | 1.17E-02 |
| 100 | GO:0010584: pollen exine formation | 1.24E-02 |
| 101 | GO:0048443: stamen development | 1.24E-02 |
| 102 | GO:0006284: base-excision repair | 1.24E-02 |
| 103 | GO:0009845: seed germination | 1.27E-02 |
| 104 | GO:0070417: cellular response to cold | 1.32E-02 |
| 105 | GO:0048653: anther development | 1.39E-02 |
| 106 | GO:0042335: cuticle development | 1.39E-02 |
| 107 | GO:0080022: primary root development | 1.39E-02 |
| 108 | GO:0010118: stomatal movement | 1.39E-02 |
| 109 | GO:0010268: brassinosteroid homeostasis | 1.47E-02 |
| 110 | GO:0071472: cellular response to salt stress | 1.47E-02 |
| 111 | GO:0009958: positive gravitropism | 1.47E-02 |
| 112 | GO:0009741: response to brassinosteroid | 1.47E-02 |
| 113 | GO:0007018: microtubule-based movement | 1.54E-02 |
| 114 | GO:0048825: cotyledon development | 1.62E-02 |
| 115 | GO:0009749: response to glucose | 1.62E-02 |
| 116 | GO:0009451: RNA modification | 1.66E-02 |
| 117 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.70E-02 |
| 118 | GO:0002229: defense response to oomycetes | 1.70E-02 |
| 119 | GO:0010583: response to cyclopentenone | 1.78E-02 |
| 120 | GO:0032502: developmental process | 1.78E-02 |
| 121 | GO:0009630: gravitropism | 1.78E-02 |
| 122 | GO:0010468: regulation of gene expression | 1.93E-02 |
| 123 | GO:0008380: RNA splicing | 1.93E-02 |
| 124 | GO:0010252: auxin homeostasis | 1.95E-02 |
| 125 | GO:0009828: plant-type cell wall loosening | 1.95E-02 |
| 126 | GO:0010027: thylakoid membrane organization | 2.21E-02 |
| 127 | GO:0010029: regulation of seed germination | 2.30E-02 |
| 128 | GO:0000160: phosphorelay signal transduction system | 2.77E-02 |
| 129 | GO:0048767: root hair elongation | 2.77E-02 |
| 130 | GO:0009910: negative regulation of flower development | 2.96E-02 |
| 131 | GO:0006952: defense response | 3.00E-02 |
| 132 | GO:0006865: amino acid transport | 3.06E-02 |
| 133 | GO:0009867: jasmonic acid mediated signaling pathway | 3.16E-02 |
| 134 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.22E-02 |
| 135 | GO:0006351: transcription, DNA-templated | 3.47E-02 |
| 136 | GO:0030001: metal ion transport | 3.47E-02 |
| 137 | GO:0015979: photosynthesis | 3.55E-02 |
| 138 | GO:0008283: cell proliferation | 3.79E-02 |
| 139 | GO:0009744: response to sucrose | 3.79E-02 |
| 140 | GO:0009636: response to toxic substance | 4.12E-02 |
| 141 | GO:0006260: DNA replication | 4.34E-02 |
| 142 | GO:0009664: plant-type cell wall organization | 4.45E-02 |
| 143 | GO:0006364: rRNA processing | 4.68E-02 |
| 144 | GO:0009736: cytokinin-activated signaling pathway | 4.68E-02 |
| 145 | GO:0009414: response to water deprivation | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 2 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 3 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 4 | GO:0003697: single-stranded DNA binding | 3.39E-05 |
| 5 | GO:0042834: peptidoglycan binding | 1.73E-04 |
| 6 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.73E-04 |
| 7 | GO:0008395: steroid hydroxylase activity | 1.73E-04 |
| 8 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.73E-04 |
| 9 | GO:0004016: adenylate cyclase activity | 1.73E-04 |
| 10 | GO:0005200: structural constituent of cytoskeleton | 1.91E-04 |
| 11 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 3.92E-04 |
| 12 | GO:0009884: cytokinin receptor activity | 3.92E-04 |
| 13 | GO:0003677: DNA binding | 4.07E-04 |
| 14 | GO:0003723: RNA binding | 4.88E-04 |
| 15 | GO:0005034: osmosensor activity | 6.40E-04 |
| 16 | GO:0003690: double-stranded DNA binding | 9.17E-04 |
| 17 | GO:0003727: single-stranded RNA binding | 1.04E-03 |
| 18 | GO:0043015: gamma-tubulin binding | 1.21E-03 |
| 19 | GO:0010328: auxin influx transmembrane transporter activity | 1.21E-03 |
| 20 | GO:0010385: double-stranded methylated DNA binding | 1.21E-03 |
| 21 | GO:0010011: auxin binding | 1.21E-03 |
| 22 | GO:0051011: microtubule minus-end binding | 1.54E-03 |
| 23 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.54E-03 |
| 24 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 1.89E-03 |
| 25 | GO:0003688: DNA replication origin binding | 1.89E-03 |
| 26 | GO:0004124: cysteine synthase activity | 2.27E-03 |
| 27 | GO:0015631: tubulin binding | 2.27E-03 |
| 28 | GO:0019900: kinase binding | 2.27E-03 |
| 29 | GO:0004519: endonuclease activity | 2.42E-03 |
| 30 | GO:0009672: auxin:proton symporter activity | 4.49E-03 |
| 31 | GO:0004673: protein histidine kinase activity | 4.99E-03 |
| 32 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.06E-03 |
| 33 | GO:0009982: pseudouridine synthase activity | 6.61E-03 |
| 34 | GO:0000175: 3'-5'-exoribonuclease activity | 6.61E-03 |
| 35 | GO:0010329: auxin efflux transmembrane transporter activity | 6.61E-03 |
| 36 | GO:0000155: phosphorelay sensor kinase activity | 6.61E-03 |
| 37 | GO:0043424: protein histidine kinase binding | 9.69E-03 |
| 38 | GO:0004540: ribonuclease activity | 1.03E-02 |
| 39 | GO:0019843: rRNA binding | 1.17E-02 |
| 40 | GO:0018024: histone-lysine N-methyltransferase activity | 1.32E-02 |
| 41 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.33E-02 |
| 42 | GO:0004402: histone acetyltransferase activity | 1.39E-02 |
| 43 | GO:0050662: coenzyme binding | 1.54E-02 |
| 44 | GO:0008289: lipid binding | 1.55E-02 |
| 45 | GO:0019901: protein kinase binding | 1.62E-02 |
| 46 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.69E-02 |
| 47 | GO:0048038: quinone binding | 1.70E-02 |
| 48 | GO:0043565: sequence-specific DNA binding | 2.58E-02 |
| 49 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 2.87E-02 |
| 50 | GO:0042393: histone binding | 3.47E-02 |
| 51 | GO:0004871: signal transducer activity | 3.89E-02 |
| 52 | GO:0043621: protein self-association | 4.01E-02 |
| 53 | GO:0015293: symporter activity | 4.12E-02 |
| 54 | GO:0016298: lipase activity | 4.80E-02 |