co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090615: mitochondrial mRNA processing	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0090322: regulation of superoxide metabolic process	0.00E+00
6	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0009913: epidermal cell differentiation	4.09E-05
9	GO:0009793: embryo development ending in seed dormancy	5.76E-05
10	GO:0009658: chloroplast organization	7.69E-05
11	GO:0010063: positive regulation of trichoblast fate specification	1.44E-04
12	GO:1900865: chloroplast RNA modification	1.84E-04
13	GO:0009451: RNA modification	3.02E-04
14	GO:0080009: mRNA methylation	3.29E-04
15	GO:1901529: positive regulation of anion channel activity	3.29E-04
16	GO:0050688: regulation of defense response to virus	3.29E-04
17	GO:0009220: pyrimidine ribonucleotide biosynthetic process	3.29E-04
18	GO:0030029: actin filament-based process	5.40E-04
19	GO:0009432: SOS response	5.40E-04
20	GO:0006471: protein ADP-ribosylation	5.40E-04
21	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	5.40E-04
22	GO:0006518: peptide metabolic process	5.40E-04
23	GO:0006364: rRNA processing	6.36E-04
24	GO:0000730: DNA recombinase assembly	7.73E-04
25	GO:0010371: regulation of gibberellin biosynthetic process	7.73E-04
26	GO:0010071: root meristem specification	7.73E-04
27	GO:0009102: biotin biosynthetic process	7.73E-04
28	GO:0010239: chloroplast mRNA processing	7.73E-04
29	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.73E-04
30	GO:0010305: leaf vascular tissue pattern formation	1.01E-03
31	GO:0006479: protein methylation	1.02E-03
32	GO:1900864: mitochondrial RNA modification	1.02E-03
33	GO:0006221: pyrimidine nucleotide biosynthetic process	1.02E-03
34	GO:0051103: DNA ligation involved in DNA repair	1.02E-03
35	GO:0006273: lagging strand elongation	1.02E-03
36	GO:0044205: 'de novo' UMP biosynthetic process	1.02E-03
37	GO:0048825: cotyledon development	1.16E-03
38	GO:0009616: virus induced gene silencing	1.29E-03
39	GO:0048497: maintenance of floral organ identity	1.29E-03
40	GO:0009845: seed germination	1.43E-03
41	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.59E-03
42	GO:0042549: photosystem II stabilization	1.59E-03
43	GO:0009959: negative gravitropism	1.59E-03
44	GO:0016554: cytidine to uridine editing	1.59E-03
45	GO:0060918: auxin transport	1.59E-03
46	GO:0042793: transcription from plastid promoter	1.59E-03
47	GO:0003006: developmental process involved in reproduction	1.59E-03
48	GO:0009643: photosynthetic acclimation	1.59E-03
49	GO:0006014: D-ribose metabolic process	1.59E-03
50	GO:0040008: regulation of growth	1.84E-03
51	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.91E-03
52	GO:0010310: regulation of hydrogen peroxide metabolic process	1.91E-03
53	GO:1901259: chloroplast rRNA processing	1.91E-03
54	GO:0009082: branched-chain amino acid biosynthetic process	1.91E-03
55	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.91E-03
56	GO:0009942: longitudinal axis specification	1.91E-03
57	GO:0009099: valine biosynthetic process	1.91E-03
58	GO:0006401: RNA catabolic process	2.24E-03
59	GO:0006955: immune response	2.24E-03
60	GO:0042148: strand invasion	2.24E-03
61	GO:0010050: vegetative phase change	2.24E-03
62	GO:0048437: floral organ development	2.24E-03
63	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	2.24E-03
64	GO:0009642: response to light intensity	2.60E-03
65	GO:0042255: ribosome assembly	2.60E-03
66	GO:0006353: DNA-templated transcription, termination	2.60E-03
67	GO:0009827: plant-type cell wall modification	2.96E-03
68	GO:0010212: response to ionizing radiation	2.96E-03
69	GO:0019430: removal of superoxide radicals	2.96E-03
70	GO:0009097: isoleucine biosynthetic process	2.96E-03
71	GO:0032544: plastid translation	2.96E-03
72	GO:0000902: cell morphogenesis	3.35E-03
73	GO:0048507: meristem development	3.35E-03
74	GO:0048589: developmental growth	3.35E-03
75	GO:0016573: histone acetylation	3.76E-03
76	GO:0010267: production of ta-siRNAs involved in RNA interference	3.76E-03
77	GO:0006349: regulation of gene expression by genetic imprinting	3.76E-03
78	GO:0016571: histone methylation	3.76E-03
79	GO:0048829: root cap development	4.18E-03
80	GO:0006949: syncytium formation	4.18E-03
81	GO:0010048: vernalization response	4.18E-03
82	GO:0006535: cysteine biosynthetic process from serine	4.18E-03
83	GO:0048765: root hair cell differentiation	4.61E-03
84	GO:0046856: phosphatidylinositol dephosphorylation	4.61E-03
85	GO:0009750: response to fructose	4.61E-03
86	GO:0006312: mitotic recombination	5.06E-03
87	GO:0045037: protein import into chloroplast stroma	5.06E-03
88	GO:0010582: floral meristem determinacy	5.06E-03
89	GO:0010152: pollen maturation	5.06E-03
90	GO:0005975: carbohydrate metabolic process	5.31E-03
91	GO:0009266: response to temperature stimulus	6.00E-03
92	GO:0048768: root hair cell tip growth	6.00E-03
93	GO:0048467: gynoecium development	6.00E-03
94	GO:0010020: chloroplast fission	6.00E-03
95	GO:0048367: shoot system development	6.16E-03
96	GO:0080188: RNA-directed DNA methylation	6.50E-03
97	GO:0016569: covalent chromatin modification	6.76E-03
98	GO:0010025: wax biosynthetic process	7.00E-03
99	GO:2000377: regulation of reactive oxygen species metabolic process	7.52E-03
100	GO:0019344: cysteine biosynthetic process	7.52E-03
101	GO:0006338: chromatin remodeling	7.52E-03
102	GO:0048364: root development	7.70E-03
103	GO:0010431: seed maturation	8.61E-03
104	GO:0003333: amino acid transmembrane transport	8.61E-03
105	GO:0016998: cell wall macromolecule catabolic process	8.61E-03
106	GO:0009058: biosynthetic process	9.48E-03
107	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.75E-03
108	GO:0048443: stamen development	1.03E-02
109	GO:0042127: regulation of cell proliferation	1.03E-02
110	GO:0042335: cuticle development	1.16E-02
111	GO:0009960: endosperm development	1.22E-02
112	GO:0071472: cellular response to salt stress	1.22E-02
113	GO:0007018: microtubule-based movement	1.28E-02
114	GO:0009749: response to glucose	1.35E-02
115	GO:0019252: starch biosynthetic process	1.35E-02
116	GO:0080156: mitochondrial mRNA modification	1.41E-02
117	GO:0007166: cell surface receptor signaling pathway	1.42E-02
118	GO:0010583: response to cyclopentenone	1.48E-02
119	GO:0008380: RNA splicing	1.49E-02
120	GO:0009828: plant-type cell wall loosening	1.62E-02
121	GO:0006310: DNA recombination	1.62E-02
122	GO:0009639: response to red or far red light	1.62E-02
123	GO:0051607: defense response to virus	1.76E-02
124	GO:0006952: defense response	1.82E-02
125	GO:0006974: cellular response to DNA damage stimulus	1.99E-02
126	GO:0016311: dephosphorylation	2.14E-02
127	GO:0048481: plant ovule development	2.22E-02
128	GO:0009910: negative regulation of flower development	2.46E-02
129	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.48E-02
130	GO:0006865: amino acid transport	2.54E-02
131	GO:0006355: regulation of transcription, DNA-templated	2.80E-02
132	GO:0009744: response to sucrose	3.15E-02
133	GO:0008283: cell proliferation	3.15E-02
134	GO:0006281: DNA repair	3.53E-02
135	GO:0006260: DNA replication	3.60E-02
136	GO:0009664: plant-type cell wall organization	3.70E-02
137	GO:0009740: gibberellic acid mediated signaling pathway	4.78E-02
138	GO:0009553: embryo sac development	4.89E-02
139	GO:0009734: auxin-activated signaling pathway	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
3	GO:0004152: dihydroorotate dehydrogenase activity	0.00E+00
4	GO:0003723: RNA binding	1.18E-05
5	GO:0004519: endonuclease activity	4.24E-05
6	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	1.44E-04
7	GO:0042834: peptidoglycan binding	1.44E-04
8	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.44E-04
9	GO:0004160: dihydroxy-acid dehydratase activity	1.44E-04
10	GO:0016274: protein-arginine N-methyltransferase activity	1.44E-04
11	GO:0016868: intramolecular transferase activity, phosphotransferases	3.29E-04
12	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	3.29E-04
13	GO:0009041: uridylate kinase activity	7.73E-04
14	GO:0003727: single-stranded RNA binding	8.13E-04
15	GO:0010011: auxin binding	1.02E-03
16	GO:0016836: hydro-lyase activity	1.02E-03
17	GO:0010328: auxin influx transmembrane transporter activity	1.02E-03
18	GO:0003989: acetyl-CoA carboxylase activity	1.29E-03
19	GO:0003910: DNA ligase (ATP) activity	1.29E-03
20	GO:0004784: superoxide dismutase activity	1.59E-03
21	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.59E-03
22	GO:0004124: cysteine synthase activity	1.91E-03
23	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.91E-03
24	GO:0004747: ribokinase activity	1.91E-03
25	GO:0000150: recombinase activity	2.24E-03
26	GO:0004222: metalloendopeptidase activity	2.55E-03
27	GO:0004520: endodeoxyribonuclease activity	2.60E-03
28	GO:0000400: four-way junction DNA binding	2.60E-03
29	GO:0008865: fructokinase activity	2.60E-03
30	GO:0008168: methyltransferase activity	3.23E-03
31	GO:0051539: 4 iron, 4 sulfur cluster binding	3.32E-03
32	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	5.06E-03
33	GO:0003690: double-stranded DNA binding	5.22E-03
34	GO:0000175: 3'-5'-exoribonuclease activity	5.52E-03
35	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	6.00E-03
36	GO:0003779: actin binding	6.97E-03
37	GO:0004540: ribonuclease activity	8.61E-03
38	GO:0008094: DNA-dependent ATPase activity	8.61E-03
39	GO:0004176: ATP-dependent peptidase activity	8.61E-03
40	GO:0019843: rRNA binding	8.99E-03
41	GO:0030170: pyridoxal phosphate binding	9.99E-03
42	GO:0005515: protein binding	1.06E-02
43	GO:0018024: histone-lysine N-methyltransferase activity	1.09E-02
44	GO:0008289: lipid binding	1.11E-02
45	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.16E-02
46	GO:0016887: ATPase activity	1.27E-02
47	GO:0019901: protein kinase binding	1.35E-02
48	GO:0048038: quinone binding	1.41E-02
49	GO:0043565: sequence-specific DNA binding	1.56E-02
50	GO:0008483: transaminase activity	1.69E-02
51	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.69E-02
52	GO:0008237: metallopeptidase activity	1.69E-02
53	GO:0005200: structural constituent of cytoskeleton	1.69E-02
54	GO:0004672: protein kinase activity	1.78E-02
55	GO:0008375: acetylglucosaminyltransferase activity	1.99E-02
56	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.38E-02
57	GO:0003697: single-stranded DNA binding	2.63E-02
58	GO:0003993: acid phosphatase activity	2.71E-02
59	GO:0042803: protein homodimerization activity	3.00E-02
60	GO:0043621: protein self-association	3.33E-02
61	GO:0015293: symporter activity	3.42E-02
62	GO:0051287: NAD binding	3.60E-02
63	GO:0003777: microtubule motor activity	4.18E-02
64	GO:0015171: amino acid transmembrane transporter activity	4.18E-02
65	GO:0003677: DNA binding	4.36E-02
66	GO:0004650: polygalacturonase activity	4.68E-02
67	GO:0016874: ligase activity	4.78E-02
68	GO:0005524: ATP binding	4.96E-02