Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G78060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070125: mitochondrial translational elongation0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0009249: protein lipoylation0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0046460: neutral lipid biosynthetic process0.00E+00
8GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0044249: cellular biosynthetic process0.00E+00
11GO:0031116: positive regulation of microtubule polymerization0.00E+00
12GO:0042407: cristae formation0.00E+00
13GO:0009106: lipoate metabolic process0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0006114: glycerol biosynthetic process0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0009658: chloroplast organization2.74E-13
18GO:0009657: plastid organization8.26E-07
19GO:0010020: chloroplast fission9.94E-06
20GO:0006415: translational termination1.16E-04
21GO:0045037: protein import into chloroplast stroma1.43E-04
22GO:0045038: protein import into chloroplast thylakoid membrane2.17E-04
23GO:0010027: thylakoid membrane organization2.31E-04
24GO:0042793: transcription from plastid promoter3.06E-04
25GO:0010190: cytochrome b6f complex assembly3.06E-04
26GO:1902458: positive regulation of stomatal opening5.06E-04
27GO:0006747: FAD biosynthetic process5.06E-04
28GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.06E-04
29GO:0006419: alanyl-tRNA aminoacylation5.06E-04
30GO:0000476: maturation of 4.5S rRNA5.06E-04
31GO:0000967: rRNA 5'-end processing5.06E-04
32GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.06E-04
33GO:0043266: regulation of potassium ion transport5.06E-04
34GO:1901135: carbohydrate derivative metabolic process5.06E-04
35GO:0042547: cell wall modification involved in multidimensional cell growth5.06E-04
36GO:0019478: D-amino acid catabolic process5.06E-04
37GO:0042371: vitamin K biosynthetic process5.06E-04
38GO:2000021: regulation of ion homeostasis5.06E-04
39GO:0006400: tRNA modification5.24E-04
40GO:0009793: embryo development ending in seed dormancy6.11E-04
41GO:0006353: DNA-templated transcription, termination6.54E-04
42GO:0071482: cellular response to light stimulus7.96E-04
43GO:0009790: embryo development8.25E-04
44GO:0001682: tRNA 5'-leader removal1.09E-03
45GO:1903426: regulation of reactive oxygen species biosynthetic process1.09E-03
46GO:0034470: ncRNA processing1.09E-03
47GO:0010198: synergid death1.09E-03
48GO:1900871: chloroplast mRNA modification1.09E-03
49GO:0060359: response to ammonium ion1.09E-03
50GO:0034755: iron ion transmembrane transport1.09E-03
51GO:0006423: cysteinyl-tRNA aminoacylation1.09E-03
52GO:0006435: threonyl-tRNA aminoacylation1.09E-03
53GO:0009220: pyrimidine ribonucleotide biosynthetic process1.09E-03
54GO:0009089: lysine biosynthetic process via diaminopimelate1.51E-03
55GO:0006352: DNA-templated transcription, initiation1.51E-03
56GO:0043157: response to cation stress1.78E-03
57GO:0005977: glycogen metabolic process1.78E-03
58GO:0048281: inflorescence morphogenesis1.78E-03
59GO:0006954: inflammatory response1.78E-03
60GO:0015940: pantothenate biosynthetic process1.78E-03
61GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.78E-03
62GO:0001578: microtubule bundle formation1.78E-03
63GO:0045493: xylan catabolic process1.78E-03
64GO:0006760: folic acid-containing compound metabolic process1.78E-03
65GO:0009627: systemic acquired resistance1.91E-03
66GO:2000012: regulation of auxin polar transport1.96E-03
67GO:0010207: photosystem II assembly2.22E-03
68GO:0071732: cellular response to nitric oxide2.49E-03
69GO:0090351: seedling development2.49E-03
70GO:0009102: biotin biosynthetic process2.58E-03
71GO:0046653: tetrahydrofolate metabolic process2.58E-03
72GO:0010239: chloroplast mRNA processing2.58E-03
73GO:0009226: nucleotide-sugar biosynthetic process2.58E-03
74GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.58E-03
75GO:0006164: purine nucleotide biosynthetic process2.58E-03
76GO:0010148: transpiration2.58E-03
77GO:0043572: plastid fission2.58E-03
78GO:0016556: mRNA modification2.58E-03
79GO:2001141: regulation of RNA biosynthetic process2.58E-03
80GO:0051322: anaphase3.48E-03
81GO:0046656: folic acid biosynthetic process3.48E-03
82GO:0022622: root system development3.48E-03
83GO:0071483: cellular response to blue light3.48E-03
84GO:0007020: microtubule nucleation3.48E-03
85GO:0044205: 'de novo' UMP biosynthetic process3.48E-03
86GO:0010021: amylopectin biosynthetic process3.48E-03
87GO:0061077: chaperone-mediated protein folding3.74E-03
88GO:0006730: one-carbon metabolic process4.09E-03
89GO:0006413: translational initiation4.33E-03
90GO:0009107: lipoate biosynthetic process4.46E-03
91GO:0016123: xanthophyll biosynthetic process4.46E-03
92GO:0046785: microtubule polymerization4.46E-03
93GO:0046907: intracellular transport4.46E-03
94GO:0032543: mitochondrial translation4.46E-03
95GO:0010236: plastoquinone biosynthetic process4.46E-03
96GO:0071369: cellular response to ethylene stimulus4.47E-03
97GO:0040008: regulation of growth4.49E-03
98GO:0009306: protein secretion4.86E-03
99GO:0009959: negative gravitropism5.53E-03
100GO:0016554: cytidine to uridine editing5.53E-03
101GO:0032973: amino acid export5.53E-03
102GO:0050665: hydrogen peroxide biosynthetic process5.53E-03
103GO:0008033: tRNA processing5.70E-03
104GO:0080086: stamen filament development6.67E-03
105GO:0009648: photoperiodism6.67E-03
106GO:0019509: L-methionine salvage from methylthioadenosine6.67E-03
107GO:0042372: phylloquinone biosynthetic process6.67E-03
108GO:0006458: 'de novo' protein folding6.67E-03
109GO:0017148: negative regulation of translation6.67E-03
110GO:0042026: protein refolding6.67E-03
111GO:0009942: longitudinal axis specification6.67E-03
112GO:0034389: lipid particle organization6.67E-03
113GO:0046654: tetrahydrofolate biosynthetic process6.67E-03
114GO:1901259: chloroplast rRNA processing6.67E-03
115GO:0030488: tRNA methylation6.67E-03
116GO:0009854: oxidative photosynthetic carbon pathway6.67E-03
117GO:0010103: stomatal complex morphogenesis7.90E-03
118GO:0032880: regulation of protein localization7.90E-03
119GO:0048528: post-embryonic root development7.90E-03
120GO:0009772: photosynthetic electron transport in photosystem II7.90E-03
121GO:0043090: amino acid import7.90E-03
122GO:0070370: cellular heat acclimation7.90E-03
123GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.90E-03
124GO:0010196: nonphotochemical quenching7.90E-03
125GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.90E-03
126GO:0009630: gravitropism8.13E-03
127GO:0006508: proteolysis8.39E-03
128GO:0071281: cellular response to iron ion8.67E-03
129GO:0000105: histidine biosynthetic process9.20E-03
130GO:0009231: riboflavin biosynthetic process9.20E-03
131GO:0052543: callose deposition in cell wall9.20E-03
132GO:0048564: photosystem I assembly9.20E-03
133GO:0006605: protein targeting9.20E-03
134GO:0009704: de-etiolation9.20E-03
135GO:0042255: ribosome assembly9.20E-03
136GO:0046620: regulation of organ growth9.20E-03
137GO:2000070: regulation of response to water deprivation9.20E-03
138GO:0070413: trehalose metabolism in response to stress9.20E-03
139GO:0006875: cellular metal ion homeostasis9.20E-03
140GO:0009932: cell tip growth1.06E-02
141GO:0001558: regulation of cell growth1.06E-02
142GO:0022900: electron transport chain1.06E-02
143GO:0006526: arginine biosynthetic process1.06E-02
144GO:0010204: defense response signaling pathway, resistance gene-independent1.06E-02
145GO:0032544: plastid translation1.06E-02
146GO:0007389: pattern specification process1.06E-02
147GO:0009733: response to auxin1.14E-02
148GO:0009821: alkaloid biosynthetic process1.20E-02
149GO:0010206: photosystem II repair1.20E-02
150GO:0080144: amino acid homeostasis1.20E-02
151GO:0006098: pentose-phosphate shunt1.20E-02
152GO:0019432: triglyceride biosynthetic process1.20E-02
153GO:0000373: Group II intron splicing1.20E-02
154GO:0009734: auxin-activated signaling pathway1.26E-02
155GO:0015995: chlorophyll biosynthetic process1.30E-02
156GO:0042761: very long-chain fatty acid biosynthetic process1.35E-02
157GO:0043067: regulation of programmed cell death1.35E-02
158GO:0006779: porphyrin-containing compound biosynthetic process1.35E-02
159GO:1900865: chloroplast RNA modification1.35E-02
160GO:0045036: protein targeting to chloroplast1.51E-02
161GO:0006949: syncytium formation1.51E-02
162GO:0006259: DNA metabolic process1.51E-02
163GO:0006782: protoporphyrinogen IX biosynthetic process1.51E-02
164GO:0019538: protein metabolic process1.51E-02
165GO:0010015: root morphogenesis1.67E-02
166GO:0019684: photosynthesis, light reaction1.67E-02
167GO:0006265: DNA topological change1.67E-02
168GO:0009073: aromatic amino acid family biosynthetic process1.67E-02
169GO:1903507: negative regulation of nucleic acid-templated transcription1.67E-02
170GO:0006879: cellular iron ion homeostasis1.67E-02
171GO:0009409: response to cold1.70E-02
172GO:0009725: response to hormone2.02E-02
173GO:0006094: gluconeogenesis2.02E-02
174GO:0009926: auxin polar transport2.37E-02
175GO:0010114: response to red light2.37E-02
176GO:0006071: glycerol metabolic process2.58E-02
177GO:0000162: tryptophan biosynthetic process2.58E-02
178GO:0010025: wax biosynthetic process2.58E-02
179GO:0009965: leaf morphogenesis2.67E-02
180GO:0005992: trehalose biosynthetic process2.77E-02
181GO:0009116: nucleoside metabolic process2.77E-02
182GO:0009944: polarity specification of adaxial/abaxial axis2.77E-02
183GO:0030150: protein import into mitochondrial matrix2.77E-02
184GO:0007010: cytoskeleton organization2.77E-02
185GO:0009664: plant-type cell wall organization2.98E-02
186GO:0051302: regulation of cell division2.98E-02
187GO:0016575: histone deacetylation2.98E-02
188GO:0006418: tRNA aminoacylation for protein translation2.98E-02
189GO:0043622: cortical microtubule organization2.98E-02
190GO:0048511: rhythmic process3.18E-02
191GO:0006364: rRNA processing3.20E-02
192GO:0009814: defense response, incompatible interaction3.40E-02
193GO:0016226: iron-sulfur cluster assembly3.40E-02
194GO:2000022: regulation of jasmonic acid mediated signaling pathway3.40E-02
195GO:0007005: mitochondrion organization3.40E-02
196GO:0031348: negative regulation of defense response3.40E-02
197GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.61E-02
198GO:0001944: vasculature development3.61E-02
199GO:0016117: carotenoid biosynthetic process4.06E-02
200GO:0051028: mRNA transport4.06E-02
201GO:0008284: positive regulation of cell proliferation4.06E-02
202GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.06E-02
203GO:0048868: pollen tube development4.53E-02
204GO:0009958: positive gravitropism4.53E-02
205GO:0006662: glycerol ether metabolic process4.53E-02
206GO:0010197: polar nucleus fusion4.53E-02
207GO:0042752: regulation of circadian rhythm4.76E-02
208GO:0007059: chromosome segregation4.76E-02
RankGO TermAdjusted P value
1GO:0015267: channel activity0.00E+00
2GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
3GO:0004358: glutamate N-acetyltransferase activity0.00E+00
4GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
5GO:0005048: signal sequence binding0.00E+00
6GO:0004076: biotin synthase activity0.00E+00
7GO:0003937: IMP cyclohydrolase activity0.00E+00
8GO:0043136: glycerol-3-phosphatase activity0.00E+00
9GO:0000121: glycerol-1-phosphatase activity0.00E+00
10GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
11GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
12GO:0008115: sarcosine oxidase activity0.00E+00
13GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
14GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
15GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
16GO:0043014: alpha-tubulin binding0.00E+00
17GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
18GO:0051721: protein phosphatase 2A binding0.00E+00
19GO:0042903: tubulin deacetylase activity0.00E+00
20GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
21GO:0004823: leucine-tRNA ligase activity0.00E+00
22GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.13E-05
23GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.13E-05
24GO:0003747: translation release factor activity5.50E-05
25GO:0016149: translation release factor activity, codon specific8.16E-05
26GO:0016851: magnesium chelatase activity8.16E-05
27GO:0001053: plastid sigma factor activity1.41E-04
28GO:0016987: sigma factor activity1.41E-04
29GO:0008237: metallopeptidase activity1.89E-04
30GO:0005528: FK506 binding3.25E-04
31GO:0004222: metalloendopeptidase activity4.20E-04
32GO:0004176: ATP-dependent peptidase activity4.21E-04
33GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.06E-04
34GO:0005227: calcium activated cation channel activity5.06E-04
35GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.06E-04
36GO:0009496: plastoquinol--plastocyanin reductase activity5.06E-04
37GO:0097367: carbohydrate derivative binding5.06E-04
38GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.06E-04
39GO:0004813: alanine-tRNA ligase activity5.06E-04
40GO:0015088: copper uptake transmembrane transporter activity5.06E-04
41GO:0016788: hydrolase activity, acting on ester bonds6.14E-04
42GO:0005525: GTP binding6.52E-04
43GO:0043621: protein self-association8.72E-04
44GO:0009977: proton motive force dependent protein transmembrane transporter activity1.09E-03
45GO:0016415: octanoyltransferase activity1.09E-03
46GO:0004047: aminomethyltransferase activity1.09E-03
47GO:0102083: 7,8-dihydromonapterin aldolase activity1.09E-03
48GO:0004817: cysteine-tRNA ligase activity1.09E-03
49GO:0004829: threonine-tRNA ligase activity1.09E-03
50GO:0019156: isoamylase activity1.09E-03
51GO:0004150: dihydroneopterin aldolase activity1.09E-03
52GO:0003919: FMN adenylyltransferase activity1.09E-03
53GO:0010291: carotene beta-ring hydroxylase activity1.09E-03
54GO:0017118: lipoyltransferase activity1.09E-03
55GO:0005381: iron ion transmembrane transporter activity1.12E-03
56GO:0003723: RNA binding1.33E-03
57GO:0070402: NADPH binding1.78E-03
58GO:0052692: raffinose alpha-galactosidase activity1.78E-03
59GO:0004180: carboxypeptidase activity1.78E-03
60GO:0003913: DNA photolyase activity1.78E-03
61GO:0002161: aminoacyl-tRNA editing activity1.78E-03
62GO:0004557: alpha-galactosidase activity1.78E-03
63GO:0003924: GTPase activity1.97E-03
64GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.33E-03
65GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.58E-03
66GO:0001872: (1->3)-beta-D-glucan binding2.58E-03
67GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.58E-03
68GO:0019201: nucleotide kinase activity2.58E-03
69GO:0048487: beta-tubulin binding2.58E-03
70GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.58E-03
71GO:0016656: monodehydroascorbate reductase (NADH) activity2.58E-03
72GO:0043023: ribosomal large subunit binding2.58E-03
73GO:0019843: rRNA binding2.94E-03
74GO:0004659: prenyltransferase activity3.48E-03
75GO:0004045: aminoacyl-tRNA hydrolase activity3.48E-03
76GO:0009044: xylan 1,4-beta-xylosidase activity3.48E-03
77GO:0019199: transmembrane receptor protein kinase activity3.48E-03
78GO:0042277: peptide binding3.48E-03
79GO:0008891: glycolate oxidase activity3.48E-03
80GO:0046556: alpha-L-arabinofuranosidase activity3.48E-03
81GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.46E-03
82GO:0004040: amidase activity4.46E-03
83GO:0030570: pectate lyase activity4.47E-03
84GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.32E-03
85GO:0080030: methyl indole-3-acetate esterase activity5.53E-03
86GO:0004332: fructose-bisphosphate aldolase activity5.53E-03
87GO:0004526: ribonuclease P activity5.53E-03
88GO:0004556: alpha-amylase activity5.53E-03
89GO:0042578: phosphoric ester hydrolase activity5.53E-03
90GO:0003743: translation initiation factor activity6.11E-03
91GO:0016853: isomerase activity6.61E-03
92GO:0004017: adenylate kinase activity6.67E-03
93GO:0003730: mRNA 3'-UTR binding6.67E-03
94GO:0004144: diacylglycerol O-acyltransferase activity6.67E-03
95GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.67E-03
96GO:0009881: photoreceptor activity7.90E-03
97GO:0008312: 7S RNA binding9.20E-03
98GO:0043022: ribosome binding9.20E-03
99GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.06E-02
100GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.06E-02
101GO:0016844: strictosidine synthase activity1.35E-02
102GO:0009672: auxin:proton symporter activity1.35E-02
103GO:0008236: serine-type peptidase activity1.37E-02
104GO:0004805: trehalose-phosphatase activity1.51E-02
105GO:0044183: protein binding involved in protein folding1.67E-02
106GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.67E-02
107GO:0003746: translation elongation factor activity1.84E-02
108GO:0000049: tRNA binding1.84E-02
109GO:0004565: beta-galactosidase activity2.02E-02
110GO:0004022: alcohol dehydrogenase (NAD) activity2.02E-02
111GO:0010329: auxin efflux transmembrane transporter activity2.02E-02
112GO:0015266: protein channel activity2.02E-02
113GO:0051539: 4 iron, 4 sulfur cluster binding2.10E-02
114GO:0008083: growth factor activity2.20E-02
115GO:0051537: 2 iron, 2 sulfur cluster binding2.57E-02
116GO:0003887: DNA-directed DNA polymerase activity2.58E-02
117GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.58E-02
118GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.58E-02
119GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.58E-02
120GO:0004519: endonuclease activity2.64E-02
121GO:0051536: iron-sulfur cluster binding2.77E-02
122GO:0004407: histone deacetylase activity2.77E-02
123GO:0003714: transcription corepressor activity2.77E-02
124GO:0015079: potassium ion transmembrane transporter activity2.98E-02
125GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.20E-02
126GO:0003690: double-stranded DNA binding3.31E-02
127GO:0003727: single-stranded RNA binding3.83E-02
128GO:0004812: aminoacyl-tRNA ligase activity4.06E-02
129GO:0047134: protein-disulfide reductase activity4.06E-02
130GO:0050660: flavin adenine dinucleotide binding4.17E-02
131GO:0008536: Ran GTPase binding4.53E-02
132GO:0004791: thioredoxin-disulfide reductase activity4.76E-02
133GO:0010181: FMN binding4.76E-02
134GO:0003729: mRNA binding4.93E-02
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Gene type



Gene DE type