co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G72600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046486: glycerolipid metabolic process	0.00E+00
2	GO:0019988: charged-tRNA amino acid modification	0.00E+00
3	GO:0000492: box C/D snoRNP assembly	0.00E+00
4	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
5	GO:0045014: negative regulation of transcription by glucose	0.00E+00
6	GO:0000491: small nucleolar ribonucleoprotein complex assembly	0.00E+00
7	GO:0090627: plant epidermal cell differentiation	0.00E+00
8	GO:0090322: regulation of superoxide metabolic process	0.00E+00
9	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
10	GO:0080127: fruit septum development	0.00E+00
11	GO:0046620: regulation of organ growth	1.20E-05
12	GO:0006518: peptide metabolic process	1.99E-05
13	GO:0009733: response to auxin	9.55E-05
14	GO:0006401: RNA catabolic process	3.09E-04
15	GO:0009734: auxin-activated signaling pathway	3.48E-04
16	GO:0033206: meiotic cytokinesis	3.55E-04
17	GO:1903866: palisade mesophyll development	3.55E-04
18	GO:0006353: DNA-templated transcription, termination	3.89E-04
19	GO:0040008: regulation of growth	3.93E-04
20	GO:0006364: rRNA processing	5.42E-04
21	GO:1900865: chloroplast RNA modification	6.73E-04
22	GO:0009828: plant-type cell wall loosening	6.83E-04
23	GO:0080009: mRNA methylation	7.72E-04
24	GO:1901529: positive regulation of anion channel activity	7.72E-04
25	GO:0010569: regulation of double-strand break repair via homologous recombination	7.72E-04
26	GO:0048731: system development	7.72E-04
27	GO:0006650: glycerophospholipid metabolic process	7.72E-04
28	GO:2000071: regulation of defense response by callose deposition	7.72E-04
29	GO:1900033: negative regulation of trichome patterning	7.72E-04
30	GO:0048829: root cap development	7.85E-04
31	GO:0006949: syncytium formation	7.85E-04
32	GO:0010588: cotyledon vascular tissue pattern formation	1.17E-03
33	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.25E-03
34	GO:0046168: glycerol-3-phosphate catabolic process	1.25E-03
35	GO:0090391: granum assembly	1.25E-03
36	GO:0045017: glycerolipid biosynthetic process	1.80E-03
37	GO:0009102: biotin biosynthetic process	1.80E-03
38	GO:0007276: gamete generation	1.80E-03
39	GO:0006072: glycerol-3-phosphate metabolic process	1.80E-03
40	GO:2000377: regulation of reactive oxygen species metabolic process	1.82E-03
41	GO:0080147: root hair cell development	1.82E-03
42	GO:0003333: amino acid transmembrane transport	2.20E-03
43	GO:0009926: auxin polar transport	2.21E-03
44	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.41E-03
45	GO:0006808: regulation of nitrogen utilization	2.42E-03
46	GO:0048629: trichome patterning	2.42E-03
47	GO:1900864: mitochondrial RNA modification	2.42E-03
48	GO:0006221: pyrimidine nucleotide biosynthetic process	2.42E-03
49	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.63E-03
50	GO:0042127: regulation of cell proliferation	2.86E-03
51	GO:0009664: plant-type cell wall organization	2.95E-03
52	GO:0016123: xanthophyll biosynthetic process	3.09E-03
53	GO:0016120: carotene biosynthetic process	3.09E-03
54	GO:0080110: sporopollenin biosynthetic process	3.09E-03
55	GO:0016131: brassinosteroid metabolic process	3.09E-03
56	GO:0010118: stomatal movement	3.34E-03
57	GO:0008033: tRNA processing	3.34E-03
58	GO:0010305: leaf vascular tissue pattern formation	3.61E-03
59	GO:0009959: negative gravitropism	3.82E-03
60	GO:0016554: cytidine to uridine editing	3.82E-03
61	GO:0009913: epidermal cell differentiation	3.82E-03
62	GO:1902456: regulation of stomatal opening	3.82E-03
63	GO:0042793: transcription from plastid promoter	3.82E-03
64	GO:0003006: developmental process involved in reproduction	3.82E-03
65	GO:0009643: photosynthetic acclimation	3.82E-03
66	GO:0080156: mitochondrial mRNA modification	4.45E-03
67	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.60E-03
68	GO:0010310: regulation of hydrogen peroxide metabolic process	4.60E-03
69	GO:2000033: regulation of seed dormancy process	4.60E-03
70	GO:0010583: response to cyclopentenone	4.75E-03
71	GO:0010103: stomatal complex morphogenesis	5.44E-03
72	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	5.44E-03
73	GO:0010374: stomatal complex development	5.44E-03
74	GO:0015937: coenzyme A biosynthetic process	5.44E-03
75	GO:0010492: maintenance of shoot apical meristem identity	6.32E-03
76	GO:0048564: photosystem I assembly	6.32E-03
77	GO:0045292: mRNA cis splicing, via spliceosome	6.32E-03
78	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.32E-03
79	GO:0009642: response to light intensity	6.32E-03
80	GO:0042255: ribosome assembly	6.32E-03
81	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	6.32E-03
82	GO:0006402: mRNA catabolic process	6.32E-03
83	GO:0007186: G-protein coupled receptor signaling pathway	7.25E-03
84	GO:0010233: phloem transport	7.25E-03
85	GO:0019430: removal of superoxide radicals	7.25E-03
86	GO:0010052: guard cell differentiation	7.25E-03
87	GO:0032544: plastid translation	7.25E-03
88	GO:0007389: pattern specification process	7.25E-03
89	GO:0009416: response to light stimulus	7.38E-03
90	GO:0048589: developmental growth	8.22E-03
91	GO:0048507: meristem development	8.22E-03
92	GO:0000373: Group II intron splicing	8.22E-03
93	GO:0031425: chloroplast RNA processing	9.24E-03
94	GO:0010218: response to far red light	9.29E-03
95	GO:0032259: methylation	9.74E-03
96	GO:0006865: amino acid transport	1.02E-02
97	GO:0045036: protein targeting to chloroplast	1.03E-02
98	GO:0006535: cysteine biosynthetic process from serine	1.03E-02
99	GO:0009451: RNA modification	1.05E-02
100	GO:0006468: protein phosphorylation	1.05E-02
101	GO:0009867: jasmonic acid mediated signaling pathway	1.07E-02
102	GO:0046856: phosphatidylinositol dephosphorylation	1.14E-02
103	GO:0009682: induced systemic resistance	1.14E-02
104	GO:1903507: negative regulation of nucleic acid-templated transcription	1.14E-02
105	GO:0009750: response to fructose	1.14E-02
106	GO:0030001: metal ion transport	1.22E-02
107	GO:0012501: programmed cell death	1.26E-02
108	GO:0045037: protein import into chloroplast stroma	1.26E-02
109	GO:0010582: floral meristem determinacy	1.26E-02
110	GO:0010152: pollen maturation	1.26E-02
111	GO:0010102: lateral root morphogenesis	1.38E-02
112	GO:0009887: animal organ morphogenesis	1.50E-02
113	GO:0048467: gynoecium development	1.50E-02
114	GO:0010020: chloroplast fission	1.50E-02
115	GO:0006270: DNA replication initiation	1.50E-02
116	GO:0080188: RNA-directed DNA methylation	1.62E-02
117	GO:0031347: regulation of defense response	1.68E-02
118	GO:0009826: unidimensional cell growth	1.69E-02
119	GO:0006636: unsaturated fatty acid biosynthetic process	1.76E-02
120	GO:0009658: chloroplast organization	1.78E-02
121	GO:0019344: cysteine biosynthetic process	1.89E-02
122	GO:0009863: salicylic acid mediated signaling pathway	1.89E-02
123	GO:0010187: negative regulation of seed germination	1.89E-02
124	GO:0010073: meristem maintenance	2.03E-02
125	GO:0006825: copper ion transport	2.03E-02
126	GO:0019953: sexual reproduction	2.03E-02
127	GO:0006874: cellular calcium ion homeostasis	2.03E-02
128	GO:0048367: shoot system development	2.28E-02
129	GO:0030245: cellulose catabolic process	2.31E-02
130	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
131	GO:0009740: gibberellic acid mediated signaling pathway	2.51E-02
132	GO:0010584: pollen exine formation	2.61E-02
133	GO:0048443: stamen development	2.61E-02
134	GO:0006284: base-excision repair	2.61E-02
135	GO:0009624: response to nematode	2.66E-02
136	GO:0051726: regulation of cell cycle	2.82E-02
137	GO:0010087: phloem or xylem histogenesis	2.92E-02
138	GO:0080022: primary root development	2.92E-02
139	GO:0009741: response to brassinosteroid	3.08E-02
140	GO:0010268: brassinosteroid homeostasis	3.08E-02
141	GO:0071472: cellular response to salt stress	3.08E-02
142	GO:0007018: microtubule-based movement	3.25E-02
143	GO:0008654: phospholipid biosynthetic process	3.41E-02
144	GO:0048825: cotyledon development	3.41E-02
145	GO:0009749: response to glucose	3.41E-02
146	GO:0071554: cell wall organization or biogenesis	3.58E-02
147	GO:0002229: defense response to oomycetes	3.58E-02
148	GO:0009845: seed germination	3.60E-02
149	GO:0016042: lipid catabolic process	3.65E-02
150	GO:0019761: glucosinolate biosynthetic process	3.75E-02
151	GO:0030163: protein catabolic process	3.93E-02
152	GO:0006397: mRNA processing	3.99E-02
153	GO:0019760: glucosinolate metabolic process	4.11E-02
154	GO:0009639: response to red or far red light	4.11E-02
155	GO:0006464: cellular protein modification process	4.11E-02
156	GO:0009793: embryo development ending in seed dormancy	4.14E-02
157	GO:0045490: pectin catabolic process	4.58E-02
158	GO:0010027: thylakoid membrane organization	4.65E-02
159	GO:0010029: regulation of seed germination	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
2	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0004141: dethiobiotin synthase activity	0.00E+00
5	GO:0071633: dihydroceramidase activity	0.00E+00
6	GO:0004835: tubulin-tyrosine ligase activity	0.00E+00
7	GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.00E+00
8	GO:0004930: G-protein coupled receptor activity	7.81E-05
9	GO:0003723: RNA binding	1.47E-04
10	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	3.55E-04
11	GO:0004654: polyribonucleotide nucleotidyltransferase activity	3.55E-04
12	GO:0004016: adenylate cyclase activity	3.55E-04
13	GO:0004632: phosphopantothenate--cysteine ligase activity	3.55E-04
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.55E-04
15	GO:0008395: steroid hydroxylase activity	3.55E-04
16	GO:0042389: omega-3 fatty acid desaturase activity	7.72E-04
17	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	7.72E-04
18	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	7.72E-04
19	GO:0004519: endonuclease activity	8.04E-04
20	GO:0000175: 3'-5'-exoribonuclease activity	1.17E-03
21	GO:0003725: double-stranded RNA binding	1.17E-03
22	GO:0016805: dipeptidase activity	1.25E-03
23	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.25E-03
24	GO:0009041: uridylate kinase activity	1.80E-03
25	GO:0010011: auxin binding	2.42E-03
26	GO:0010328: auxin influx transmembrane transporter activity	2.42E-03
27	GO:0030570: pectate lyase activity	2.63E-03
28	GO:0008725: DNA-3-methyladenine glycosylase activity	3.09E-03
29	GO:0004888: transmembrane signaling receptor activity	3.09E-03
30	GO:0003688: DNA replication origin binding	3.82E-03
31	GO:0004784: superoxide dismutase activity	3.82E-03
32	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	3.82E-03
33	GO:0004124: cysteine synthase activity	4.60E-03
34	GO:0030515: snoRNA binding	5.44E-03
35	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	7.25E-03
36	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	7.97E-03
37	GO:0000989: transcription factor activity, transcription factor binding	8.22E-03
38	GO:0004222: metalloendopeptidase activity	9.29E-03
39	GO:0003993: acid phosphatase activity	1.12E-02
40	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	1.26E-02
41	GO:0043621: protein self-association	1.50E-02
42	GO:0015293: symporter activity	1.55E-02
43	GO:0004190: aspartic-type endopeptidase activity	1.62E-02
44	GO:0005217: intracellular ligand-gated ion channel activity	1.62E-02
45	GO:0004970: ionotropic glutamate receptor activity	1.62E-02
46	GO:0008168: methyltransferase activity	1.69E-02
47	GO:0016788: hydrolase activity, acting on ester bonds	1.82E-02
48	GO:0003714: transcription corepressor activity	1.89E-02
49	GO:0015171: amino acid transmembrane transporter activity	2.07E-02
50	GO:0004540: ribonuclease activity	2.17E-02
51	GO:0008810: cellulase activity	2.46E-02
52	GO:0016874: ligase activity	2.51E-02
53	GO:0003779: actin binding	2.58E-02
54	GO:0003727: single-stranded RNA binding	2.61E-02
55	GO:0052689: carboxylic ester hydrolase activity	2.64E-02
56	GO:0005102: receptor binding	2.77E-02
57	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.08E-02
58	GO:0001085: RNA polymerase II transcription factor binding	3.08E-02
59	GO:0050662: coenzyme binding	3.25E-02
60	GO:0019843: rRNA binding	3.33E-02
61	GO:0019901: protein kinase binding	3.41E-02
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.42E-02
63	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.49E-02
64	GO:0004674: protein serine/threonine kinase activity	3.58E-02
65	GO:0048038: quinone binding	3.58E-02
66	GO:0030170: pyridoxal phosphate binding	3.69E-02
67	GO:0008237: metallopeptidase activity	4.29E-02
68	GO:0005200: structural constituent of cytoskeleton	4.29E-02
69	GO:0016413: O-acetyltransferase activity	4.47E-02
70	GO:0051213: dioxygenase activity	4.65E-02
71	GO:0004672: protein kinase activity	4.68E-02