Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G72040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043488: regulation of mRNA stability0.00E+00
2GO:0061157: mRNA destabilization0.00E+00
3GO:0090706: specification of plant organ position0.00E+00
4GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
5GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
6GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
7GO:0031116: positive regulation of microtubule polymerization0.00E+00
8GO:0010068: protoderm histogenesis0.00E+00
9GO:0007037: vacuolar phosphate transport0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0031129: inductive cell-cell signaling0.00E+00
12GO:0007172: signal complex assembly0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0015843: methylammonium transport0.00E+00
15GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.15E-10
16GO:0006468: protein phosphorylation3.08E-08
17GO:0009638: phototropism5.39E-05
18GO:0009067: aspartate family amino acid biosynthetic process6.54E-05
19GO:0009089: lysine biosynthetic process via diaminopimelate8.73E-05
20GO:0010158: abaxial cell fate specification1.76E-04
21GO:1902183: regulation of shoot apical meristem development1.76E-04
22GO:0005992: trehalose biosynthetic process2.51E-04
23GO:0009082: branched-chain amino acid biosynthetic process3.37E-04
24GO:0009099: valine biosynthetic process3.37E-04
25GO:0009088: threonine biosynthetic process3.37E-04
26GO:0016310: phosphorylation3.89E-04
27GO:0009658: chloroplast organization3.96E-04
28GO:0048508: embryonic meristem development4.45E-04
29GO:0006177: GMP biosynthetic process4.45E-04
30GO:0005991: trehalose metabolic process4.45E-04
31GO:0010450: inflorescence meristem growth4.45E-04
32GO:0006747: FAD biosynthetic process4.45E-04
33GO:0051171: regulation of nitrogen compound metabolic process4.45E-04
34GO:0010482: regulation of epidermal cell division4.45E-04
35GO:0009090: homoserine biosynthetic process4.45E-04
36GO:0071028: nuclear mRNA surveillance4.45E-04
37GO:1902265: abscisic acid homeostasis4.45E-04
38GO:0010480: microsporocyte differentiation4.45E-04
39GO:0006264: mitochondrial DNA replication4.45E-04
40GO:0033259: plastid DNA replication4.45E-04
41GO:0009787: regulation of abscisic acid-activated signaling pathway5.41E-04
42GO:0070413: trehalose metabolism in response to stress5.41E-04
43GO:0009097: isoleucine biosynthetic process6.60E-04
44GO:2000024: regulation of leaf development7.90E-04
45GO:0032502: developmental process8.89E-04
46GO:0071051: polyadenylation-dependent snoRNA 3'-end processing9.61E-04
47GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole9.61E-04
48GO:0034475: U4 snRNA 3'-end processing9.61E-04
49GO:1900871: chloroplast mRNA modification9.61E-04
50GO:0007154: cell communication9.61E-04
51GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation9.61E-04
52GO:2000039: regulation of trichome morphogenesis9.61E-04
53GO:0042814: monopolar cell growth9.61E-04
54GO:0009945: radial axis specification9.61E-04
55GO:0080175: phragmoplast microtubule organization9.61E-04
56GO:0009786: regulation of asymmetric cell division9.61E-04
57GO:0071258: cellular response to gravity9.61E-04
58GO:0031125: rRNA 3'-end processing9.61E-04
59GO:0007166: cell surface receptor signaling pathway9.95E-04
60GO:0016075: rRNA catabolic process1.57E-03
61GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.57E-03
62GO:0031022: nuclear migration along microfilament1.57E-03
63GO:0051127: positive regulation of actin nucleation1.57E-03
64GO:0019419: sulfate reduction1.57E-03
65GO:0051604: protein maturation1.57E-03
66GO:0045604: regulation of epidermal cell differentiation1.57E-03
67GO:0001578: microtubule bundle formation1.57E-03
68GO:0016050: vesicle organization1.57E-03
69GO:0045165: cell fate commitment1.57E-03
70GO:0010020: chloroplast fission1.83E-03
71GO:0009934: regulation of meristem structural organization1.83E-03
72GO:0090351: seedling development2.05E-03
73GO:0007231: osmosensory signaling pathway2.27E-03
74GO:0051639: actin filament network formation2.27E-03
75GO:0009226: nucleotide-sugar biosynthetic process2.27E-03
76GO:0048645: animal organ formation2.27E-03
77GO:0044211: CTP salvage2.27E-03
78GO:0010255: glucose mediated signaling pathway2.27E-03
79GO:0015696: ammonium transport2.27E-03
80GO:0048530: fruit morphogenesis2.27E-03
81GO:0046739: transport of virus in multicellular host2.27E-03
82GO:0019048: modulation by virus of host morphology or physiology2.27E-03
83GO:0032981: mitochondrial respiratory chain complex I assembly2.27E-03
84GO:2000904: regulation of starch metabolic process2.27E-03
85GO:0006164: purine nucleotide biosynthetic process2.27E-03
86GO:0031048: chromatin silencing by small RNA2.27E-03
87GO:0043572: plastid fission2.27E-03
88GO:2001141: regulation of RNA biosynthetic process2.27E-03
89GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.27E-03
90GO:0019344: cysteine biosynthetic process2.54E-03
91GO:0009944: polarity specification of adaxial/abaxial axis2.54E-03
92GO:0010187: negative regulation of seed germination2.54E-03
93GO:0051764: actin crosslink formation3.05E-03
94GO:0015846: polyamine transport3.05E-03
95GO:0051322: anaphase3.05E-03
96GO:0033500: carbohydrate homeostasis3.05E-03
97GO:0072488: ammonium transmembrane transport3.05E-03
98GO:0044205: 'de novo' UMP biosynthetic process3.05E-03
99GO:0051567: histone H3-K9 methylation3.05E-03
100GO:0009902: chloroplast relocation3.05E-03
101GO:0007020: microtubule nucleation3.05E-03
102GO:0044206: UMP salvage3.05E-03
103GO:0007623: circadian rhythm3.58E-03
104GO:0051225: spindle assembly3.90E-03
105GO:0016131: brassinosteroid metabolic process3.90E-03
106GO:0048578: positive regulation of long-day photoperiodism, flowering3.90E-03
107GO:0046785: microtubule polymerization3.90E-03
108GO:0006544: glycine metabolic process3.90E-03
109GO:0048653: anther development4.69E-03
110GO:0009959: negative gravitropism4.83E-03
111GO:0006655: phosphatidylglycerol biosynthetic process4.83E-03
112GO:0045962: positive regulation of development, heterochronic4.83E-03
113GO:0016458: gene silencing4.83E-03
114GO:0006206: pyrimidine nucleobase metabolic process4.83E-03
115GO:0009635: response to herbicide4.83E-03
116GO:0018258: protein O-linked glycosylation via hydroxyproline4.83E-03
117GO:0006563: L-serine metabolic process4.83E-03
118GO:0009228: thiamine biosynthetic process4.83E-03
119GO:0010405: arabinogalactan protein metabolic process4.83E-03
120GO:0010182: sugar mediated signaling pathway5.06E-03
121GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.83E-03
122GO:0042372: phylloquinone biosynthetic process5.83E-03
123GO:0009942: longitudinal axis specification5.83E-03
124GO:0009903: chloroplast avoidance movement5.83E-03
125GO:0030488: tRNA methylation5.83E-03
126GO:0048444: floral organ morphogenesis5.83E-03
127GO:0009851: auxin biosynthetic process5.84E-03
128GO:0048367: shoot system development6.44E-03
129GO:0048528: post-embryonic root development6.89E-03
130GO:0010050: vegetative phase change6.89E-03
131GO:0048437: floral organ development6.89E-03
132GO:0010161: red light signaling pathway6.89E-03
133GO:0009610: response to symbiotic fungus6.89E-03
134GO:0030154: cell differentiation7.03E-03
135GO:0009740: gibberellic acid mediated signaling pathway7.25E-03
136GO:0052543: callose deposition in cell wall8.02E-03
137GO:0009850: auxin metabolic process8.02E-03
138GO:0010078: maintenance of root meristem identity8.02E-03
139GO:0009704: de-etiolation8.02E-03
140GO:0042255: ribosome assembly8.02E-03
141GO:0006353: DNA-templated transcription, termination8.02E-03
142GO:0009231: riboflavin biosynthetic process8.02E-03
143GO:0051607: defense response to virus8.56E-03
144GO:0010099: regulation of photomorphogenesis9.21E-03
145GO:0006002: fructose 6-phosphate metabolic process9.21E-03
146GO:0071482: cellular response to light stimulus9.21E-03
147GO:0010052: guard cell differentiation9.21E-03
148GO:0009827: plant-type cell wall modification9.21E-03
149GO:0010100: negative regulation of photomorphogenesis9.21E-03
150GO:0006526: arginine biosynthetic process9.21E-03
151GO:0010497: plasmodesmata-mediated intercellular transport9.21E-03
152GO:0043562: cellular response to nitrogen levels9.21E-03
153GO:0009808: lignin metabolic process9.21E-03
154GO:0010093: specification of floral organ identity9.21E-03
155GO:0010029: regulation of seed germination9.60E-03
156GO:0009051: pentose-phosphate shunt, oxidative branch1.05E-02
157GO:0006783: heme biosynthetic process1.05E-02
158GO:0000373: Group II intron splicing1.05E-02
159GO:0006189: 'de novo' IMP biosynthetic process1.05E-02
160GO:0000902: cell morphogenesis1.05E-02
161GO:0009735: response to cytokinin1.15E-02
162GO:0042761: very long-chain fatty acid biosynthetic process1.18E-02
163GO:0035999: tetrahydrofolate interconversion1.18E-02
164GO:0009098: leucine biosynthetic process1.18E-02
165GO:0009086: methionine biosynthetic process1.18E-02
166GO:1900865: chloroplast RNA modification1.18E-02
167GO:0010380: regulation of chlorophyll biosynthetic process1.18E-02
168GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.18E-02
169GO:0031425: chloroplast RNA processing1.18E-02
170GO:0000160: phosphorelay signal transduction system1.25E-02
171GO:0006949: syncytium formation1.31E-02
172GO:0009299: mRNA transcription1.31E-02
173GO:0006535: cysteine biosynthetic process from serine1.31E-02
174GO:0000103: sulfate assimilation1.31E-02
175GO:0030422: production of siRNA involved in RNA interference1.31E-02
176GO:0048829: root cap development1.31E-02
177GO:0009641: shade avoidance1.31E-02
178GO:0009684: indoleacetic acid biosynthetic process1.46E-02
179GO:0006816: calcium ion transport1.46E-02
180GO:0009773: photosynthetic electron transport in photosystem I1.46E-02
181GO:1903507: negative regulation of nucleic acid-templated transcription1.46E-02
182GO:0006352: DNA-templated transcription, initiation1.46E-02
183GO:0048229: gametophyte development1.46E-02
184GO:0006415: translational termination1.46E-02
185GO:0040008: regulation of growth1.48E-02
186GO:0009637: response to blue light1.51E-02
187GO:0010152: pollen maturation1.60E-02
188GO:0016024: CDP-diacylglycerol biosynthetic process1.60E-02
189GO:0010582: floral meristem determinacy1.60E-02
190GO:0009767: photosynthetic electron transport chain1.75E-02
191GO:0030048: actin filament-based movement1.75E-02
192GO:0010588: cotyledon vascular tissue pattern formation1.75E-02
193GO:0010628: positive regulation of gene expression1.75E-02
194GO:0006006: glucose metabolic process1.75E-02
195GO:0009785: blue light signaling pathway1.75E-02
196GO:0030036: actin cytoskeleton organization1.75E-02
197GO:0010075: regulation of meristem growth1.75E-02
198GO:0009725: response to hormone1.75E-02
199GO:0006631: fatty acid metabolic process1.80E-02
200GO:0048467: gynoecium development1.91E-02
201GO:0009933: meristem structural organization1.91E-02
202GO:0010030: positive regulation of seed germination2.07E-02
203GO:0070588: calcium ion transmembrane transport2.07E-02
204GO:0009965: leaf morphogenesis2.19E-02
205GO:0010025: wax biosynthetic process2.24E-02
206GO:0006855: drug transmembrane transport2.28E-02
207GO:0031347: regulation of defense response2.36E-02
208GO:0051017: actin filament bundle assembly2.41E-02
209GO:0007010: cytoskeleton organization2.41E-02
210GO:0009664: plant-type cell wall organization2.45E-02
211GO:0043622: cortical microtubule organization2.59E-02
212GO:0010073: meristem maintenance2.59E-02
213GO:0006825: copper ion transport2.59E-02
214GO:0009826: unidimensional cell growth2.60E-02
215GO:0009736: cytokinin-activated signaling pathway2.63E-02
216GO:0009585: red, far-red light phototransduction2.63E-02
217GO:0006306: DNA methylation2.77E-02
218GO:0051260: protein homooligomerization2.77E-02
219GO:0006417: regulation of translation2.91E-02
220GO:0010017: red or far-red light signaling pathway2.95E-02
221GO:2000022: regulation of jasmonic acid mediated signaling pathway2.95E-02
222GO:0006730: one-carbon metabolic process2.95E-02
223GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.14E-02
224GO:0010082: regulation of root meristem growth3.14E-02
225GO:0009686: gibberellin biosynthetic process3.14E-02
226GO:0009723: response to ethylene3.27E-02
227GO:0010091: trichome branching3.33E-02
228GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.53E-02
229GO:0042631: cellular response to water deprivation3.73E-02
230GO:0000226: microtubule cytoskeleton organization3.73E-02
231GO:0000271: polysaccharide biosynthetic process3.73E-02
232GO:0080022: primary root development3.73E-02
233GO:0008033: tRNA processing3.73E-02
234GO:0042335: cuticle development3.73E-02
235GO:0010087: phloem or xylem histogenesis3.73E-02
236GO:0046777: protein autophosphorylation3.88E-02
237GO:0008360: regulation of cell shape3.94E-02
238GO:0009958: positive gravitropism3.94E-02
239GO:0045489: pectin biosynthetic process3.94E-02
240GO:0010154: fruit development3.94E-02
241GO:0006342: chromatin silencing3.94E-02
242GO:0009742: brassinosteroid mediated signaling pathway3.96E-02
243GO:0009646: response to absence of light4.14E-02
244GO:0048825: cotyledon development4.36E-02
245GO:0008654: phospholipid biosynthetic process4.36E-02
246GO:0055114: oxidation-reduction process4.48E-02
247GO:0000302: response to reactive oxygen species4.57E-02
248GO:0016132: brassinosteroid biosynthetic process4.57E-02
249GO:0010583: response to cyclopentenone4.79E-02
250GO:0016032: viral process4.79E-02
RankGO TermAdjusted P value
1GO:0019808: polyamine binding0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0004056: argininosuccinate lyase activity0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
6GO:0004674: protein serine/threonine kinase activity7.38E-08
7GO:0016301: kinase activity1.46E-07
8GO:0005524: ATP binding1.07E-05
9GO:0004672: protein kinase activity5.70E-05
10GO:0004072: aspartate kinase activity6.54E-05
11GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.28E-04
12GO:0050139: nicotinate-N-glucosyltransferase activity4.45E-04
13GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity4.45E-04
14GO:0003984: acetolactate synthase activity4.45E-04
15GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.45E-04
16GO:0004008: copper-exporting ATPase activity4.45E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.45E-04
18GO:0010285: L,L-diaminopimelate aminotransferase activity4.45E-04
19GO:0010313: phytochrome binding4.45E-04
20GO:0043621: protein self-association6.50E-04
21GO:0033741: adenylyl-sulfate reductase (glutathione) activity9.61E-04
22GO:0003938: IMP dehydrogenase activity9.61E-04
23GO:0009973: adenylyl-sulfate reductase activity9.61E-04
24GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.61E-04
25GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.61E-04
26GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity9.61E-04
27GO:0003919: FMN adenylyltransferase activity9.61E-04
28GO:0004412: homoserine dehydrogenase activity9.61E-04
29GO:0050017: L-3-cyanoalanine synthase activity9.61E-04
30GO:0017118: lipoyltransferase activity9.61E-04
31GO:0043425: bHLH transcription factor binding9.61E-04
32GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.61E-04
33GO:0004805: trehalose-phosphatase activity1.08E-03
34GO:0005089: Rho guanyl-nucleotide exchange factor activity1.25E-03
35GO:0070330: aromatase activity1.57E-03
36GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.57E-03
37GO:0052655: L-valine transaminase activity2.27E-03
38GO:0001872: (1->3)-beta-D-glucan binding2.27E-03
39GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.27E-03
40GO:0000254: C-4 methylsterol oxidase activity2.27E-03
41GO:0017172: cysteine dioxygenase activity2.27E-03
42GO:0052656: L-isoleucine transaminase activity2.27E-03
43GO:0035197: siRNA binding2.27E-03
44GO:0052654: L-leucine transaminase activity2.27E-03
45GO:0050661: NADP binding2.91E-03
46GO:0004845: uracil phosphoribosyltransferase activity3.05E-03
47GO:0004737: pyruvate decarboxylase activity3.05E-03
48GO:0004345: glucose-6-phosphate dehydrogenase activity3.05E-03
49GO:0008409: 5'-3' exonuclease activity3.05E-03
50GO:0016987: sigma factor activity3.05E-03
51GO:0004084: branched-chain-amino-acid transaminase activity3.05E-03
52GO:0019199: transmembrane receptor protein kinase activity3.05E-03
53GO:0001053: plastid sigma factor activity3.05E-03
54GO:0033612: receptor serine/threonine kinase binding3.08E-03
55GO:0004372: glycine hydroxymethyltransferase activity3.90E-03
56GO:0016846: carbon-sulfur lyase activity3.90E-03
57GO:0018685: alkane 1-monooxygenase activity3.90E-03
58GO:0003727: single-stranded RNA binding4.00E-03
59GO:0004605: phosphatidate cytidylyltransferase activity4.83E-03
60GO:1990714: hydroxyproline O-galactosyltransferase activity4.83E-03
61GO:0004709: MAP kinase kinase kinase activity4.83E-03
62GO:0016208: AMP binding4.83E-03
63GO:0042578: phosphoric ester hydrolase activity4.83E-03
64GO:0008519: ammonium transmembrane transporter activity4.83E-03
65GO:0030976: thiamine pyrophosphate binding4.83E-03
66GO:0004124: cysteine synthase activity5.83E-03
67GO:0004849: uridine kinase activity5.83E-03
68GO:0003730: mRNA 3'-UTR binding5.83E-03
69GO:0003872: 6-phosphofructokinase activity6.89E-03
70GO:0000156: phosphorelay response regulator activity7.13E-03
71GO:0051015: actin filament binding7.13E-03
72GO:0016791: phosphatase activity7.59E-03
73GO:0103075: indole-3-pyruvate monooxygenase activity8.02E-03
74GO:0016597: amino acid binding8.56E-03
75GO:0050660: flavin adenine dinucleotide binding8.70E-03
76GO:0005375: copper ion transmembrane transporter activity9.21E-03
77GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity9.21E-03
78GO:0003747: translation release factor activity1.05E-02
79GO:0030247: polysaccharide binding1.07E-02
80GO:0004252: serine-type endopeptidase activity1.19E-02
81GO:0030170: pyridoxal phosphate binding1.19E-02
82GO:0015238: drug transmembrane transporter activity1.25E-02
83GO:0004713: protein tyrosine kinase activity1.31E-02
84GO:0004871: signal transducer activity1.36E-02
85GO:0042803: protein homodimerization activity1.36E-02
86GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.38E-02
87GO:0004521: endoribonuclease activity1.60E-02
88GO:0008017: microtubule binding1.67E-02
89GO:0000175: 3'-5'-exoribonuclease activity1.75E-02
90GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.75E-02
91GO:0004089: carbonate dehydratase activity1.75E-02
92GO:0005262: calcium channel activity1.75E-02
93GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.91E-02
94GO:0003887: DNA-directed DNA polymerase activity2.24E-02
95GO:0005528: FK506 binding2.41E-02
96GO:0003714: transcription corepressor activity2.41E-02
97GO:0015079: potassium ion transmembrane transporter activity2.59E-02
98GO:0005345: purine nucleobase transmembrane transporter activity2.59E-02
99GO:0004176: ATP-dependent peptidase activity2.77E-02
100GO:0019706: protein-cysteine S-palmitoyltransferase activity2.77E-02
101GO:0008408: 3'-5' exonuclease activity2.77E-02
102GO:0016788: hydrolase activity, acting on ester bonds2.80E-02
103GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.95E-02
104GO:0030570: pectate lyase activity3.14E-02
105GO:0008514: organic anion transmembrane transporter activity3.33E-02
106GO:0004499: N,N-dimethylaniline monooxygenase activity3.33E-02
107GO:0016874: ligase activity3.52E-02
108GO:0005515: protein binding3.93E-02
109GO:0008536: Ran GTPase binding3.94E-02
110GO:0001085: RNA polymerase II transcription factor binding3.94E-02
111GO:0052689: carboxylic ester hydrolase activity4.04E-02
112GO:0050662: coenzyme binding4.14E-02
113GO:0010181: FMN binding4.14E-02
114GO:0016758: transferase activity, transferring hexosyl groups4.55E-02
115GO:0016762: xyloglucan:xyloglucosyl transferase activity4.57E-02
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Gene type



Gene DE type