Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G69420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031129: inductive cell-cell signaling0.00E+00
2GO:2001294: malonyl-CoA catabolic process0.00E+00
3GO:0006399: tRNA metabolic process0.00E+00
4GO:0010412: mannan metabolic process0.00E+00
5GO:0015843: methylammonium transport0.00E+00
6GO:0097275: cellular ammonia homeostasis0.00E+00
7GO:0043488: regulation of mRNA stability0.00E+00
8GO:0061157: mRNA destabilization0.00E+00
9GO:0090706: specification of plant organ position0.00E+00
10GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
11GO:0031054: pre-miRNA processing0.00E+00
12GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
13GO:0031116: positive regulation of microtubule polymerization0.00E+00
14GO:0010068: protoderm histogenesis0.00E+00
15GO:0051924: regulation of calcium ion transport0.00E+00
16GO:0051322: anaphase9.22E-05
17GO:0045038: protein import into chloroplast thylakoid membrane1.43E-04
18GO:1902183: regulation of shoot apical meristem development1.43E-04
19GO:0010158: abaxial cell fate specification1.43E-04
20GO:0009099: valine biosynthetic process2.77E-04
21GO:0009082: branched-chain amino acid biosynthetic process2.77E-04
22GO:0006659: phosphatidylserine biosynthetic process3.92E-04
23GO:0043087: regulation of GTPase activity3.92E-04
24GO:2000021: regulation of ion homeostasis3.92E-04
25GO:0006264: mitochondrial DNA replication3.92E-04
26GO:0033259: plastid DNA replication3.92E-04
27GO:1902458: positive regulation of stomatal opening3.92E-04
28GO:0048508: embryonic meristem development3.92E-04
29GO:0006177: GMP biosynthetic process3.92E-04
30GO:0010450: inflorescence meristem growth3.92E-04
31GO:0051171: regulation of nitrogen compound metabolic process3.92E-04
32GO:0010482: regulation of epidermal cell division3.92E-04
33GO:0071028: nuclear mRNA surveillance3.92E-04
34GO:0043266: regulation of potassium ion transport3.92E-04
35GO:0007155: cell adhesion4.48E-04
36GO:0009097: isoleucine biosynthetic process5.48E-04
37GO:0010206: photosystem II repair6.57E-04
38GO:2000024: regulation of leaf development6.57E-04
39GO:0010583: response to cyclopentenone6.99E-04
40GO:1900865: chloroplast RNA modification7.75E-04
41GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.49E-04
42GO:0009945: radial axis specification8.49E-04
43GO:0042814: monopolar cell growth8.49E-04
44GO:0031648: protein destabilization8.49E-04
45GO:0042550: photosystem I stabilization8.49E-04
46GO:0031125: rRNA 3'-end processing8.49E-04
47GO:1903426: regulation of reactive oxygen species biosynthetic process8.49E-04
48GO:0071051: polyadenylation-dependent snoRNA 3'-end processing8.49E-04
49GO:0034475: U4 snRNA 3'-end processing8.49E-04
50GO:0080005: photosystem stoichiometry adjustment8.49E-04
51GO:0042853: L-alanine catabolic process8.49E-04
52GO:1900871: chloroplast mRNA modification8.49E-04
53GO:2000039: regulation of trichome morphogenesis8.49E-04
54GO:0007154: cell communication8.49E-04
55GO:0009658: chloroplast organization1.20E-03
56GO:0030036: actin cytoskeleton organization1.34E-03
57GO:0080055: low-affinity nitrate transport1.38E-03
58GO:0045604: regulation of epidermal cell differentiation1.38E-03
59GO:0006753: nucleoside phosphate metabolic process1.38E-03
60GO:0001578: microtubule bundle formation1.38E-03
61GO:0045493: xylan catabolic process1.38E-03
62GO:2001295: malonyl-CoA biosynthetic process1.38E-03
63GO:0045165: cell fate commitment1.38E-03
64GO:0016075: rRNA catabolic process1.38E-03
65GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.38E-03
66GO:0051127: positive regulation of actin nucleation1.38E-03
67GO:0019419: sulfate reduction1.38E-03
68GO:0010589: leaf proximal/distal pattern formation1.38E-03
69GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.87E-03
70GO:0006168: adenine salvage1.99E-03
71GO:0006164: purine nucleotide biosynthetic process1.99E-03
72GO:0043572: plastid fission1.99E-03
73GO:2001141: regulation of RNA biosynthetic process1.99E-03
74GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.99E-03
75GO:0006166: purine ribonucleoside salvage1.99E-03
76GO:0051639: actin filament network formation1.99E-03
77GO:0048645: animal organ formation1.99E-03
78GO:0010255: glucose mediated signaling pathway1.99E-03
79GO:0015696: ammonium transport1.99E-03
80GO:0048530: fruit morphogenesis1.99E-03
81GO:0010187: negative regulation of seed germination2.10E-03
82GO:0019344: cysteine biosynthetic process2.10E-03
83GO:0009944: polarity specification of adaxial/abaxial axis2.10E-03
84GO:0007020: microtubule nucleation2.67E-03
85GO:0009902: chloroplast relocation2.67E-03
86GO:0009165: nucleotide biosynthetic process2.67E-03
87GO:0051764: actin crosslink formation2.67E-03
88GO:0015846: polyamine transport2.67E-03
89GO:0046355: mannan catabolic process2.67E-03
90GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.67E-03
91GO:0072488: ammonium transmembrane transport2.67E-03
92GO:0006021: inositol biosynthetic process2.67E-03
93GO:2000022: regulation of jasmonic acid mediated signaling pathway2.78E-03
94GO:0044209: AMP salvage3.42E-03
95GO:0046785: microtubule polymerization3.42E-03
96GO:0010154: fruit development4.17E-03
97GO:0009635: response to herbicide4.23E-03
98GO:0000741: karyogamy4.23E-03
99GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.23E-03
100GO:0009959: negative gravitropism4.23E-03
101GO:0006655: phosphatidylglycerol biosynthetic process4.23E-03
102GO:0006139: nucleobase-containing compound metabolic process4.23E-03
103GO:0016554: cytidine to uridine editing4.23E-03
104GO:0045962: positive regulation of development, heterochronic4.23E-03
105GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.23E-03
106GO:0009117: nucleotide metabolic process4.23E-03
107GO:0048444: floral organ morphogenesis5.09E-03
108GO:0042372: phylloquinone biosynthetic process5.09E-03
109GO:0009942: longitudinal axis specification5.09E-03
110GO:0048280: vesicle fusion with Golgi apparatus5.09E-03
111GO:0009740: gibberellic acid mediated signaling pathway5.67E-03
112GO:0030163: protein catabolic process5.87E-03
113GO:0006400: tRNA modification6.02E-03
114GO:0035196: production of miRNAs involved in gene silencing by miRNA6.02E-03
115GO:0010161: red light signaling pathway6.02E-03
116GO:0009610: response to symbiotic fungus6.02E-03
117GO:0048528: post-embryonic root development6.02E-03
118GO:0015937: coenzyme A biosynthetic process6.02E-03
119GO:0010078: maintenance of root meristem identity7.00E-03
120GO:0009704: de-etiolation7.00E-03
121GO:2000070: regulation of response to water deprivation7.00E-03
122GO:0019375: galactolipid biosynthetic process7.00E-03
123GO:0000910: cytokinesis7.05E-03
124GO:0046777: protein autophosphorylation7.97E-03
125GO:0043562: cellular response to nitrogen levels8.03E-03
126GO:0009808: lignin metabolic process8.03E-03
127GO:0010093: specification of floral organ identity8.03E-03
128GO:0010099: regulation of photomorphogenesis8.03E-03
129GO:0006002: fructose 6-phosphate metabolic process8.03E-03
130GO:0071482: cellular response to light stimulus8.03E-03
131GO:0010100: negative regulation of photomorphogenesis8.03E-03
132GO:0009735: response to cytokinin8.17E-03
133GO:0006783: heme biosynthetic process9.12E-03
134GO:0000373: Group II intron splicing9.12E-03
135GO:0006189: 'de novo' IMP biosynthetic process9.12E-03
136GO:0051865: protein autoubiquitination9.12E-03
137GO:0009638: phototropism1.03E-02
138GO:0010267: production of ta-siRNAs involved in RNA interference1.03E-02
139GO:0042761: very long-chain fatty acid biosynthetic process1.03E-02
140GO:0009098: leucine biosynthetic process1.03E-02
141GO:0010018: far-red light signaling pathway1.03E-02
142GO:0048354: mucilage biosynthetic process involved in seed coat development1.03E-02
143GO:0010380: regulation of chlorophyll biosynthetic process1.03E-02
144GO:0045036: protein targeting to chloroplast1.14E-02
145GO:0006949: syncytium formation1.14E-02
146GO:0010192: mucilage biosynthetic process1.14E-02
147GO:0009299: mRNA transcription1.14E-02
148GO:0006896: Golgi to vacuole transport1.14E-02
149GO:0006535: cysteine biosynthetic process from serine1.14E-02
150GO:0000103: sulfate assimilation1.14E-02
151GO:0040008: regulation of growth1.16E-02
152GO:0045490: pectin catabolic process1.23E-02
153GO:0006352: DNA-templated transcription, initiation1.27E-02
154GO:0006415: translational termination1.27E-02
155GO:0009684: indoleacetic acid biosynthetic process1.27E-02
156GO:1903507: negative regulation of nucleic acid-templated transcription1.27E-02
157GO:0045037: protein import into chloroplast stroma1.40E-02
158GO:0010152: pollen maturation1.40E-02
159GO:0016024: CDP-diacylglycerol biosynthetic process1.40E-02
160GO:0009733: response to auxin1.41E-02
161GO:0006631: fatty acid metabolic process1.48E-02
162GO:0009725: response to hormone1.53E-02
163GO:0010588: cotyledon vascular tissue pattern formation1.53E-02
164GO:0006468: protein phosphorylation1.59E-02
165GO:0048467: gynoecium development1.66E-02
166GO:0010020: chloroplast fission1.66E-02
167GO:0009933: meristem structural organization1.66E-02
168GO:0009965: leaf morphogenesis1.80E-02
169GO:0090351: seedling development1.81E-02
170GO:0010030: positive regulation of seed germination1.81E-02
171GO:0009825: multidimensional cell growth1.81E-02
172GO:0010025: wax biosynthetic process1.95E-02
173GO:0042753: positive regulation of circadian rhythm1.95E-02
174GO:0009664: plant-type cell wall organization2.02E-02
175GO:0009826: unidimensional cell growth2.04E-02
176GO:0007010: cytoskeleton organization2.10E-02
177GO:0051017: actin filament bundle assembly2.10E-02
178GO:0005992: trehalose biosynthetic process2.10E-02
179GO:0080147: root hair cell development2.10E-02
180GO:0000027: ribosomal large subunit assembly2.10E-02
181GO:0009585: red, far-red light phototransduction2.16E-02
182GO:0010073: meristem maintenance2.25E-02
183GO:0043622: cortical microtubule organization2.25E-02
184GO:0051260: protein homooligomerization2.41E-02
185GO:0031408: oxylipin biosynthetic process2.41E-02
186GO:0035428: hexose transmembrane transport2.57E-02
187GO:0048367: shoot system development2.64E-02
188GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.73E-02
189GO:0009686: gibberellin biosynthetic process2.73E-02
190GO:0009306: protein secretion2.90E-02
191GO:0010091: trichome branching2.90E-02
192GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.07E-02
193GO:0042147: retrograde transport, endosome to Golgi3.07E-02
194GO:0009624: response to nematode3.08E-02
195GO:0080022: primary root development3.25E-02
196GO:0042335: cuticle development3.25E-02
197GO:0010087: phloem or xylem histogenesis3.25E-02
198GO:0048653: anther development3.25E-02
199GO:0042631: cellular response to water deprivation3.25E-02
200GO:0000226: microtubule cytoskeleton organization3.25E-02
201GO:0010305: leaf vascular tissue pattern formation3.42E-02
202GO:0010197: polar nucleus fusion3.42E-02
203GO:0010182: sugar mediated signaling pathway3.42E-02
204GO:0046323: glucose import3.42E-02
205GO:0008360: regulation of cell shape3.42E-02
206GO:0009958: positive gravitropism3.42E-02
207GO:0045454: cell redox homeostasis3.51E-02
208GO:0007018: microtubule-based movement3.61E-02
209GO:0008654: phospholipid biosynthetic process3.79E-02
210GO:0009851: auxin biosynthetic process3.79E-02
211GO:0006623: protein targeting to vacuole3.79E-02
212GO:0048825: cotyledon development3.79E-02
213GO:0009791: post-embryonic development3.79E-02
214GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.98E-02
215GO:0006891: intra-Golgi vesicle-mediated transport3.98E-02
216GO:0016032: viral process4.17E-02
217GO:1901657: glycosyl compound metabolic process4.36E-02
218GO:0009828: plant-type cell wall loosening4.56E-02
219GO:0009639: response to red or far red light4.56E-02
220GO:0006464: cellular protein modification process4.56E-02
221GO:0071805: potassium ion transmembrane transport4.76E-02
222GO:0006633: fatty acid biosynthetic process4.82E-02
223GO:0006413: translational initiation4.94E-02
RankGO TermAdjusted P value
1GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
4GO:1990534: thermospermine oxidase activity0.00E+00
5GO:0019136: deoxynucleoside kinase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0019808: polyamine binding0.00E+00
8GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
9GO:0030570: pectate lyase activity3.23E-04
10GO:0046481: digalactosyldiacylglycerol synthase activity3.92E-04
11GO:0010313: phytochrome binding3.92E-04
12GO:0050139: nicotinate-N-glucosyltransferase activity3.92E-04
13GO:0046480: galactolipid galactosyltransferase activity3.92E-04
14GO:0010945: CoA pyrophosphatase activity3.92E-04
15GO:0047958: glycine:2-oxoglutarate aminotransferase activity3.92E-04
16GO:0003984: acetolactate synthase activity3.92E-04
17GO:0008017: microtubule binding6.06E-04
18GO:0004512: inositol-3-phosphate synthase activity8.49E-04
19GO:0050017: L-3-cyanoalanine synthase activity8.49E-04
20GO:0017118: lipoyltransferase activity8.49E-04
21GO:0043425: bHLH transcription factor binding8.49E-04
22GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.49E-04
23GO:0009977: proton motive force dependent protein transmembrane transporter activity8.49E-04
24GO:0033741: adenylyl-sulfate reductase (glutathione) activity8.49E-04
25GO:0003938: IMP dehydrogenase activity8.49E-04
26GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.49E-04
27GO:0009973: adenylyl-sulfate reductase activity8.49E-04
28GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.49E-04
29GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity8.49E-04
30GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.38E-03
31GO:0080054: low-affinity nitrate transmembrane transporter activity1.38E-03
32GO:0070330: aromatase activity1.38E-03
33GO:0004148: dihydrolipoyl dehydrogenase activity1.38E-03
34GO:0016829: lyase activity1.83E-03
35GO:0052656: L-isoleucine transaminase activity1.99E-03
36GO:0052654: L-leucine transaminase activity1.99E-03
37GO:0035198: miRNA binding1.99E-03
38GO:0052655: L-valine transaminase activity1.99E-03
39GO:0035529: NADH pyrophosphatase activity1.99E-03
40GO:0000254: C-4 methylsterol oxidase activity1.99E-03
41GO:0035250: UDP-galactosyltransferase activity1.99E-03
42GO:0003999: adenine phosphoribosyltransferase activity1.99E-03
43GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.99E-03
44GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.99E-03
45GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.67E-03
46GO:0046556: alpha-L-arabinofuranosidase activity2.67E-03
47GO:0001053: plastid sigma factor activity2.67E-03
48GO:0004737: pyruvate decarboxylase activity2.67E-03
49GO:0008409: 5'-3' exonuclease activity2.67E-03
50GO:0016985: mannan endo-1,4-beta-mannosidase activity2.67E-03
51GO:0008453: alanine-glyoxylate transaminase activity2.67E-03
52GO:0016987: sigma factor activity2.67E-03
53GO:0009044: xylan 1,4-beta-xylosidase activity2.67E-03
54GO:0004084: branched-chain-amino-acid transaminase activity2.67E-03
55GO:0003989: acetyl-CoA carboxylase activity3.42E-03
56GO:0016846: carbon-sulfur lyase activity3.42E-03
57GO:0018685: alkane 1-monooxygenase activity3.42E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor3.42E-03
59GO:0042578: phosphoric ester hydrolase activity4.23E-03
60GO:0008519: ammonium transmembrane transporter activity4.23E-03
61GO:0030976: thiamine pyrophosphate binding4.23E-03
62GO:0004709: MAP kinase kinase kinase activity4.23E-03
63GO:0000210: NAD+ diphosphatase activity4.23E-03
64GO:0016208: AMP binding4.23E-03
65GO:0016462: pyrophosphatase activity4.23E-03
66GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.09E-03
67GO:0004124: cysteine synthase activity5.09E-03
68GO:0016832: aldehyde-lyase activity5.09E-03
69GO:0003730: mRNA 3'-UTR binding5.09E-03
70GO:0016301: kinase activity5.15E-03
71GO:0003872: 6-phosphofructokinase activity6.02E-03
72GO:0043022: ribosome binding7.00E-03
73GO:0030247: polysaccharide binding8.80E-03
74GO:0003747: translation release factor activity9.12E-03
75GO:0008236: serine-type peptidase activity9.27E-03
76GO:0004252: serine-type endopeptidase activity9.31E-03
77GO:0005524: ATP binding1.06E-02
78GO:0005506: iron ion binding1.10E-02
79GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.12E-02
80GO:0004805: trehalose-phosphatase activity1.14E-02
81GO:0008794: arsenate reductase (glutaredoxin) activity1.27E-02
82GO:0003725: double-stranded RNA binding1.53E-02
83GO:0000175: 3'-5'-exoribonuclease activity1.53E-02
84GO:0008131: primary amine oxidase activity1.66E-02
85GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.66E-02
86GO:0042802: identical protein binding1.67E-02
87GO:0043621: protein self-association1.73E-02
88GO:0019825: oxygen binding1.76E-02
89GO:0003887: DNA-directed DNA polymerase activity1.95E-02
90GO:0003714: transcription corepressor activity2.10E-02
91GO:0005528: FK506 binding2.10E-02
92GO:0015079: potassium ion transmembrane transporter activity2.25E-02
93GO:0004674: protein serine/threonine kinase activity2.30E-02
94GO:0003777: microtubule motor activity2.40E-02
95GO:0008408: 3'-5' exonuclease activity2.41E-02
96GO:0050660: flavin adenine dinucleotide binding2.57E-02
97GO:0003727: single-stranded RNA binding2.90E-02
98GO:0016746: transferase activity, transferring acyl groups3.17E-02
99GO:0008536: Ran GTPase binding3.42E-02
100GO:0001085: RNA polymerase II transcription factor binding3.42E-02
101GO:0010181: FMN binding3.61E-02
102GO:0005355: glucose transmembrane transporter activity3.61E-02
103GO:0004871: signal transducer activity3.71E-02
104GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.96E-02
105GO:0046872: metal ion binding4.17E-02
106GO:0030170: pyridoxal phosphate binding4.27E-02
107GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.36E-02
108GO:0051015: actin filament binding4.36E-02
109GO:0000156: phosphorelay response regulator activity4.36E-02
110GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.56E-02
111GO:0008565: protein transporter activity4.60E-02
112GO:0005200: structural constituent of cytoskeleton4.76E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions4.76E-02
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Gene type



Gene DE type