Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G68400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044154: histone H3-K14 acetylation0.00E+00
2GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
7GO:0009606: tropism0.00E+00
8GO:0090322: regulation of superoxide metabolic process0.00E+00
9GO:0000372: Group I intron splicing0.00E+00
10GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
11GO:1903224: regulation of endodermal cell differentiation0.00E+00
12GO:0043972: histone H3-K23 acetylation0.00E+00
13GO:0080127: fruit septum development0.00E+00
14GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
15GO:0045184: establishment of protein localization0.00E+00
16GO:0033206: meiotic cytokinesis0.00E+00
17GO:0090615: mitochondrial mRNA processing0.00E+00
18GO:0000492: box C/D snoRNP assembly0.00E+00
19GO:0042794: rRNA transcription from plastid promoter0.00E+00
20GO:0042793: transcription from plastid promoter8.06E-06
21GO:0009658: chloroplast organization2.30E-05
22GO:0006353: DNA-templated transcription, termination3.16E-05
23GO:0010501: RNA secondary structure unwinding7.86E-05
24GO:0010305: leaf vascular tissue pattern formation9.05E-05
25GO:0009734: auxin-activated signaling pathway9.23E-05
26GO:2000038: regulation of stomatal complex development1.51E-04
27GO:1900864: mitochondrial RNA modification1.51E-04
28GO:0048497: maintenance of floral organ identity2.30E-04
29GO:0009793: embryo development ending in seed dormancy2.75E-04
30GO:0009913: epidermal cell differentiation3.24E-04
31GO:2000033: regulation of seed dormancy process4.33E-04
32GO:0034970: histone H3-R2 methylation5.26E-04
33GO:0042659: regulation of cell fate specification5.26E-04
34GO:0034972: histone H3-R26 methylation5.26E-04
35GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.26E-04
36GO:0043971: histone H3-K18 acetylation5.26E-04
37GO:0090558: plant epidermis development5.26E-04
38GO:0010063: positive regulation of trichoblast fate specification5.26E-04
39GO:1903866: palisade mesophyll development5.26E-04
40GO:0034971: histone H3-R17 methylation5.26E-04
41GO:0035987: endodermal cell differentiation5.26E-04
42GO:0010342: endosperm cellularization5.26E-04
43GO:0006430: lysyl-tRNA aminoacylation5.26E-04
44GO:0034757: negative regulation of iron ion transport5.26E-04
45GO:0006401: RNA catabolic process5.54E-04
46GO:0006955: immune response5.54E-04
47GO:0009938: negative regulation of gibberellic acid mediated signaling pathway6.91E-04
48GO:0042255: ribosome assembly6.91E-04
49GO:0000373: Group II intron splicing1.01E-03
50GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.09E-03
51GO:1901529: positive regulation of anion channel activity1.13E-03
52GO:0010569: regulation of double-strand break repair via homologous recombination1.13E-03
53GO:0010271: regulation of chlorophyll catabolic process1.13E-03
54GO:0010541: acropetal auxin transport1.13E-03
55GO:0009662: etioplast organization1.13E-03
56GO:1900033: negative regulation of trichome patterning1.13E-03
57GO:0080009: mRNA methylation1.13E-03
58GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.13E-03
59GO:2000123: positive regulation of stomatal complex development1.13E-03
60GO:1900865: chloroplast RNA modification1.18E-03
61GO:0006364: rRNA processing1.32E-03
62GO:0048829: root cap development1.38E-03
63GO:0009733: response to auxin1.75E-03
64GO:0006351: transcription, DNA-templated1.82E-03
65GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.85E-03
66GO:0090708: specification of plant organ axis polarity1.85E-03
67GO:0080117: secondary growth1.85E-03
68GO:0044210: 'de novo' CTP biosynthetic process1.85E-03
69GO:0090391: granum assembly1.85E-03
70GO:0006518: peptide metabolic process1.85E-03
71GO:0010589: leaf proximal/distal pattern formation1.85E-03
72GO:0042780: tRNA 3'-end processing1.85E-03
73GO:0009432: SOS response1.85E-03
74GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.85E-03
75GO:0010029: regulation of seed germination1.92E-03
76GO:0010588: cotyledon vascular tissue pattern formation2.08E-03
77GO:0009740: gibberellic acid mediated signaling pathway2.08E-03
78GO:0009416: response to light stimulus2.19E-03
79GO:0010540: basipetal auxin transport2.35E-03
80GO:0048481: plant ovule development2.51E-03
81GO:0080188: RNA-directed DNA methylation2.63E-03
82GO:0010239: chloroplast mRNA processing2.69E-03
83GO:0007276: gamete generation2.69E-03
84GO:0043481: anthocyanin accumulation in tissues in response to UV light2.69E-03
85GO:0000730: DNA recombinase assembly2.69E-03
86GO:0010371: regulation of gibberellin biosynthetic process2.69E-03
87GO:1902476: chloride transmembrane transport2.69E-03
88GO:0010071: root meristem specification2.69E-03
89GO:0033169: histone H3-K9 demethylation2.69E-03
90GO:0009102: biotin biosynthetic process2.69E-03
91GO:0009863: salicylic acid mediated signaling pathway3.26E-03
92GO:0010187: negative regulation of seed germination3.26E-03
93GO:2000377: regulation of reactive oxygen species metabolic process3.26E-03
94GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.62E-03
95GO:0030104: water homeostasis3.62E-03
96GO:0000914: phragmoplast assembly3.62E-03
97GO:0006221: pyrimidine nucleotide biosynthetic process3.62E-03
98GO:0009956: radial pattern formation3.62E-03
99GO:0006808: regulation of nitrogen utilization3.62E-03
100GO:0006479: protein methylation3.62E-03
101GO:0048629: trichome patterning3.62E-03
102GO:0003333: amino acid transmembrane transport3.96E-03
103GO:0016998: cell wall macromolecule catabolic process3.96E-03
104GO:0032876: negative regulation of DNA endoreduplication4.65E-03
105GO:0080110: sporopollenin biosynthetic process4.65E-03
106GO:0030308: negative regulation of cell growth4.65E-03
107GO:0010375: stomatal complex patterning4.65E-03
108GO:0009616: virus induced gene silencing4.65E-03
109GO:0016558: protein import into peroxisome matrix4.65E-03
110GO:0016120: carotene biosynthetic process4.65E-03
111GO:0016123: xanthophyll biosynthetic process4.65E-03
112GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.73E-03
113GO:0040008: regulation of growth4.91E-03
114GO:0042127: regulation of cell proliferation5.15E-03
115GO:1902456: regulation of stomatal opening5.76E-03
116GO:0016554: cytidine to uridine editing5.76E-03
117GO:0048831: regulation of shoot system development5.76E-03
118GO:0042176: regulation of protein catabolic process5.76E-03
119GO:0010315: auxin efflux5.76E-03
120GO:0003006: developmental process involved in reproduction5.76E-03
121GO:0009643: photosynthetic acclimation5.76E-03
122GO:0009959: negative gravitropism5.76E-03
123GO:0010087: phloem or xylem histogenesis6.04E-03
124GO:0009739: response to gibberellin6.25E-03
125GO:0000911: cytokinesis by cell plate formation6.95E-03
126GO:0048509: regulation of meristem development6.95E-03
127GO:2000037: regulation of stomatal complex patterning6.95E-03
128GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity6.95E-03
129GO:0010310: regulation of hydrogen peroxide metabolic process6.95E-03
130GO:2000067: regulation of root morphogenesis6.95E-03
131GO:0007018: microtubule-based movement7.01E-03
132GO:0048825: cotyledon development7.53E-03
133GO:0009909: regulation of flower development7.85E-03
134GO:0080156: mitochondrial mRNA modification8.07E-03
135GO:0042148: strand invasion8.23E-03
136GO:0006821: chloride transport8.23E-03
137GO:0010098: suspensor development8.23E-03
138GO:0048437: floral organ development8.23E-03
139GO:0035196: production of miRNAs involved in gene silencing by miRNA8.23E-03
140GO:0010103: stomatal complex morphogenesis8.23E-03
141GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.23E-03
142GO:0048367: shoot system development8.90E-03
143GO:0010090: trichome morphogenesis9.20E-03
144GO:0006402: mRNA catabolic process9.58E-03
145GO:0009642: response to light intensity9.58E-03
146GO:0046620: regulation of organ growth9.58E-03
147GO:0048766: root hair initiation9.58E-03
148GO:0010492: maintenance of shoot apical meristem identity9.58E-03
149GO:0055075: potassium ion homeostasis9.58E-03
150GO:0009639: response to red or far red light9.80E-03
151GO:0009828: plant-type cell wall loosening9.80E-03
152GO:0006355: regulation of transcription, DNA-templated9.83E-03
153GO:0019430: removal of superoxide radicals1.10E-02
154GO:0009827: plant-type cell wall modification1.10E-02
155GO:0010212: response to ionizing radiation1.10E-02
156GO:0007186: G-protein coupled receptor signaling pathway1.10E-02
157GO:0001510: RNA methylation1.10E-02
158GO:0010233: phloem transport1.10E-02
159GO:0010497: plasmodesmata-mediated intercellular transport1.10E-02
160GO:0032544: plastid translation1.10E-02
161GO:0007389: pattern specification process1.10E-02
162GO:0044030: regulation of DNA methylation1.10E-02
163GO:0010093: specification of floral organ identity1.10E-02
164GO:0048507: meristem development1.25E-02
165GO:0048589: developmental growth1.25E-02
166GO:0000902: cell morphogenesis1.25E-02
167GO:0042761: very long-chain fatty acid biosynthetic process1.41E-02
168GO:2000280: regulation of root development1.41E-02
169GO:0006349: regulation of gene expression by genetic imprinting1.41E-02
170GO:0031425: chloroplast RNA processing1.41E-02
171GO:0006468: protein phosphorylation1.42E-02
172GO:0010048: vernalization response1.57E-02
173GO:0006535: cysteine biosynthetic process from serine1.57E-02
174GO:0030422: production of siRNA involved in RNA interference1.57E-02
175GO:0016441: posttranscriptional gene silencing1.57E-02
176GO:0006949: syncytium formation1.57E-02
177GO:0010218: response to far red light1.69E-02
178GO:0009750: response to fructose1.74E-02
179GO:0048765: root hair cell differentiation1.74E-02
180GO:0009790: embryo development1.76E-02
181GO:0006865: amino acid transport1.86E-02
182GO:0045892: negative regulation of transcription, DNA-templated1.91E-02
183GO:0008361: regulation of cell size1.92E-02
184GO:0006312: mitotic recombination1.92E-02
185GO:0012501: programmed cell death1.92E-02
186GO:0010152: pollen maturation1.92E-02
187GO:0045037: protein import into chloroplast stroma1.92E-02
188GO:0010582: floral meristem determinacy1.92E-02
189GO:0009867: jasmonic acid mediated signaling pathway1.95E-02
190GO:0010102: lateral root morphogenesis2.10E-02
191GO:0030001: metal ion transport2.22E-02
192GO:0009451: RNA modification2.24E-02
193GO:0048467: gynoecium development2.29E-02
194GO:0010020: chloroplast fission2.29E-02
195GO:0009933: meristem structural organization2.29E-02
196GO:0006270: DNA replication initiation2.29E-02
197GO:0009887: animal organ morphogenesis2.29E-02
198GO:0009825: multidimensional cell growth2.49E-02
199GO:0009926: auxin polar transport2.52E-02
200GO:0006636: unsaturated fatty acid biosynthetic process2.69E-02
201GO:0006833: water transport2.69E-02
202GO:0008380: RNA splicing2.71E-02
203GO:0006397: mRNA processing2.71E-02
204GO:0009965: leaf morphogenesis2.83E-02
205GO:0080147: root hair cell development2.89E-02
206GO:0019344: cysteine biosynthetic process2.89E-02
207GO:0051302: regulation of cell division3.10E-02
208GO:0006418: tRNA aminoacylation for protein translation3.10E-02
209GO:0006874: cellular calcium ion homeostasis3.10E-02
210GO:0042538: hyperosmotic salinity response3.16E-02
211GO:0009664: plant-type cell wall organization3.16E-02
212GO:0010431: seed maturation3.32E-02
213GO:0009736: cytokinin-activated signaling pathway3.39E-02
214GO:0010082: regulation of root meristem growth3.77E-02
215GO:0071215: cellular response to abscisic acid stimulus3.77E-02
216GO:0009686: gibberellin biosynthetic process3.77E-02
217GO:0010584: pollen exine formation4.00E-02
218GO:0048443: stamen development4.00E-02
219GO:0010091: trichome branching4.00E-02
220GO:0006284: base-excision repair4.00E-02
221GO:0070417: cellular response to cold4.23E-02
222GO:0042631: cellular response to water deprivation4.47E-02
223GO:0042335: cuticle development4.47E-02
224GO:0000271: polysaccharide biosynthetic process4.47E-02
225GO:0080022: primary root development4.47E-02
226GO:0008033: tRNA processing4.47E-02
227GO:0010118: stomatal movement4.47E-02
228GO:0009723: response to ethylene4.48E-02
229GO:0016567: protein ubiquitination4.61E-02
230GO:0009958: positive gravitropism4.72E-02
231GO:0009960: endosperm development4.72E-02
232GO:0045489: pectin biosynthetic process4.72E-02
233GO:0006396: RNA processing4.95E-02
234GO:0048544: recognition of pollen4.97E-02
RankGO TermAdjusted P value
1GO:0008859: exoribonuclease II activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0042834: peptidoglycan binding0.00E+00
4GO:0004141: dethiobiotin synthase activity0.00E+00
5GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
8GO:0003723: RNA binding1.72E-05
9GO:0004004: ATP-dependent RNA helicase activity3.33E-04
10GO:0008026: ATP-dependent helicase activity5.16E-04
11GO:0004824: lysine-tRNA ligase activity5.26E-04
12GO:0016274: protein-arginine N-methyltransferase activity5.26E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.26E-04
14GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor5.26E-04
15GO:0004654: polyribonucleotide nucleotidyltransferase activity5.26E-04
16GO:0004016: adenylate cyclase activity5.26E-04
17GO:0003727: single-stranded RNA binding6.37E-04
18GO:0008173: RNA methyltransferase activity8.42E-04
19GO:0000989: transcription factor activity, transcription factor binding1.01E-03
20GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.13E-03
21GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.13E-03
22GO:0009884: cytokinin receptor activity1.13E-03
23GO:0032454: histone demethylase activity (H3-K9 specific)1.13E-03
24GO:0035241: protein-arginine omega-N monomethyltransferase activity1.13E-03
25GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.13E-03
26GO:0042389: omega-3 fatty acid desaturase activity1.13E-03
27GO:0003690: double-stranded DNA binding1.40E-03
28GO:0017150: tRNA dihydrouridine synthase activity1.85E-03
29GO:0042781: 3'-tRNA processing endoribonuclease activity1.85E-03
30GO:0070181: small ribosomal subunit rRNA binding1.85E-03
31GO:0005034: osmosensor activity1.85E-03
32GO:0016707: gibberellin 3-beta-dioxygenase activity1.85E-03
33GO:0008469: histone-arginine N-methyltransferase activity1.85E-03
34GO:0000175: 3'-5'-exoribonuclease activity2.08E-03
35GO:0008168: methyltransferase activity2.48E-03
36GO:0003883: CTP synthase activity2.69E-03
37GO:0009041: uridylate kinase activity2.69E-03
38GO:0001872: (1->3)-beta-D-glucan binding2.69E-03
39GO:0003700: transcription factor activity, sequence-specific DNA binding2.72E-03
40GO:0003697: single-stranded DNA binding3.40E-03
41GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.62E-03
42GO:0010328: auxin influx transmembrane transporter activity3.62E-03
43GO:0010385: double-stranded methylated DNA binding3.62E-03
44GO:0005253: anion channel activity3.62E-03
45GO:0004930: G-protein coupled receptor activity3.62E-03
46GO:0010011: auxin binding3.62E-03
47GO:0043565: sequence-specific DNA binding3.89E-03
48GO:0008289: lipid binding4.26E-03
49GO:0008725: DNA-3-methyladenine glycosylase activity4.65E-03
50GO:0030570: pectate lyase activity4.73E-03
51GO:0004784: superoxide dismutase activity5.76E-03
52GO:0005247: voltage-gated chloride channel activity5.76E-03
53GO:0003688: DNA replication origin binding5.76E-03
54GO:0005524: ATP binding5.78E-03
55GO:0019900: kinase binding6.95E-03
56GO:0004124: cysteine synthase activity6.95E-03
57GO:0019901: protein kinase binding7.53E-03
58GO:0003777: microtubule motor activity7.85E-03
59GO:0000150: recombinase activity8.23E-03
60GO:0030515: snoRNA binding8.23E-03
61GO:0004519: endonuclease activity8.89E-03
62GO:0000400: four-way junction DNA binding9.58E-03
63GO:0004520: endodeoxyribonuclease activity9.58E-03
64GO:0003677: DNA binding1.00E-02
65GO:0003724: RNA helicase activity1.10E-02
66GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.10E-02
67GO:0009672: auxin:proton symporter activity1.41E-02
68GO:0031490: chromatin DNA binding1.41E-02
69GO:0019843: rRNA binding1.44E-02
70GO:0004673: protein histidine kinase activity1.57E-02
71GO:0008171: O-methyltransferase activity1.57E-02
72GO:0004674: protein serine/threonine kinase activity1.61E-02
73GO:0004222: metalloendopeptidase activity1.69E-02
74GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.70E-02
75GO:0000976: transcription regulatory region sequence-specific DNA binding1.92E-02
76GO:0004871: signal transducer activity2.00E-02
77GO:0042803: protein homodimerization activity2.00E-02
78GO:0003725: double-stranded RNA binding2.10E-02
79GO:0004022: alcohol dehydrogenase (NAD) activity2.10E-02
80GO:0010329: auxin efflux transmembrane transporter activity2.10E-02
81GO:0031072: heat shock protein binding2.10E-02
82GO:0000155: phosphorelay sensor kinase activity2.10E-02
83GO:0009982: pseudouridine synthase activity2.10E-02
84GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.29E-02
85GO:0008017: microtubule binding2.30E-02
86GO:0004970: ionotropic glutamate receptor activity2.49E-02
87GO:0005217: intracellular ligand-gated ion channel activity2.49E-02
88GO:0004190: aspartic-type endopeptidase activity2.49E-02
89GO:0015293: symporter activity2.83E-02
90GO:0008134: transcription factor binding2.89E-02
91GO:0043424: protein histidine kinase binding3.10E-02
92GO:0015079: potassium ion transmembrane transporter activity3.10E-02
93GO:0008094: DNA-dependent ATPase activity3.32E-02
94GO:0004540: ribonuclease activity3.32E-02
95GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.54E-02
96GO:0015171: amino acid transmembrane transporter activity3.75E-02
97GO:0016788: hydrolase activity, acting on ester bonds3.83E-02
98GO:0018024: histone-lysine N-methyltransferase activity4.23E-02
99GO:0004812: aminoacyl-tRNA ligase activity4.23E-02
100GO:0004402: histone acetyltransferase activity4.47E-02
101GO:0003779: actin binding4.67E-02
102GO:0001085: RNA polymerase II transcription factor binding4.72E-02
103GO:0016887: ATPase activity4.80E-02
104GO:0050662: coenzyme binding4.97E-02
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Gene type



Gene DE type