GO Enrichment Analysis of Co-expressed Genes with
AT1G66750
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0015843: methylammonium transport | 0.00E+00 |
| 3 | GO:0046719: regulation by virus of viral protein levels in host cell | 0.00E+00 |
| 4 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 5 | GO:0090408: phloem nitrate loading | 0.00E+00 |
| 6 | GO:0007172: signal complex assembly | 0.00E+00 |
| 7 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 8 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 9 | GO:0010480: microsporocyte differentiation | 0.00E+00 |
| 10 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 6.32E-06 |
| 11 | GO:0009934: regulation of meristem structural organization | 8.15E-06 |
| 12 | GO:0048437: floral organ development | 5.77E-05 |
| 13 | GO:0006002: fructose 6-phosphate metabolic process | 9.46E-05 |
| 14 | GO:0043609: regulation of carbon utilization | 1.20E-04 |
| 15 | GO:0000160: phosphorelay signal transduction system | 1.72E-04 |
| 16 | GO:0048229: gametophyte development | 1.96E-04 |
| 17 | GO:0010582: floral meristem determinacy | 2.26E-04 |
| 18 | GO:0010075: regulation of meristem growth | 2.59E-04 |
| 19 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.77E-04 |
| 20 | GO:0010254: nectary development | 2.77E-04 |
| 21 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.77E-04 |
| 22 | GO:0010569: regulation of double-strand break repair via homologous recombination | 2.77E-04 |
| 23 | GO:0010434: bract formation | 2.77E-04 |
| 24 | GO:0015712: hexose phosphate transport | 2.77E-04 |
| 25 | GO:0048439: flower morphogenesis | 2.77E-04 |
| 26 | GO:0031537: regulation of anthocyanin metabolic process | 2.77E-04 |
| 27 | GO:0006468: protein phosphorylation | 2.90E-04 |
| 28 | GO:0010020: chloroplast fission | 2.94E-04 |
| 29 | GO:0009658: chloroplast organization | 3.90E-04 |
| 30 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.09E-04 |
| 31 | GO:0001578: microtubule bundle formation | 4.58E-04 |
| 32 | GO:0009954: proximal/distal pattern formation | 4.58E-04 |
| 33 | GO:0051127: positive regulation of actin nucleation | 4.58E-04 |
| 34 | GO:0019419: sulfate reduction | 4.58E-04 |
| 35 | GO:0006000: fructose metabolic process | 4.58E-04 |
| 36 | GO:0035436: triose phosphate transmembrane transport | 4.58E-04 |
| 37 | GO:0009736: cytokinin-activated signaling pathway | 4.63E-04 |
| 38 | GO:0006306: DNA methylation | 4.95E-04 |
| 39 | GO:0010082: regulation of root meristem growth | 5.89E-04 |
| 40 | GO:2001141: regulation of RNA biosynthetic process | 6.57E-04 |
| 41 | GO:1902476: chloride transmembrane transport | 6.57E-04 |
| 42 | GO:0051639: actin filament network formation | 6.57E-04 |
| 43 | GO:0044211: CTP salvage | 6.57E-04 |
| 44 | GO:0019048: modulation by virus of host morphology or physiology | 6.57E-04 |
| 45 | GO:0031048: chromatin silencing by small RNA | 6.57E-04 |
| 46 | GO:0009800: cinnamic acid biosynthetic process | 6.57E-04 |
| 47 | GO:0015696: ammonium transport | 6.57E-04 |
| 48 | GO:0046739: transport of virus in multicellular host | 6.57E-04 |
| 49 | GO:2000904: regulation of starch metabolic process | 6.57E-04 |
| 50 | GO:0043572: plastid fission | 6.57E-04 |
| 51 | GO:0048653: anther development | 7.45E-04 |
| 52 | GO:0006342: chromatin silencing | 8.00E-04 |
| 53 | GO:0009165: nucleotide biosynthetic process | 8.72E-04 |
| 54 | GO:0051764: actin crosslink formation | 8.72E-04 |
| 55 | GO:0051322: anaphase | 8.72E-04 |
| 56 | GO:0072488: ammonium transmembrane transport | 8.72E-04 |
| 57 | GO:0051567: histone H3-K9 methylation | 8.72E-04 |
| 58 | GO:0015713: phosphoglycerate transport | 8.72E-04 |
| 59 | GO:0044206: UMP salvage | 8.72E-04 |
| 60 | GO:0044205: 'de novo' UMP biosynthetic process | 8.72E-04 |
| 61 | GO:1902183: regulation of shoot apical meristem development | 1.10E-03 |
| 62 | GO:0010158: abaxial cell fate specification | 1.10E-03 |
| 63 | GO:0006544: glycine metabolic process | 1.10E-03 |
| 64 | GO:0071368: cellular response to cytokinin stimulus | 1.10E-03 |
| 65 | GO:0006563: L-serine metabolic process | 1.35E-03 |
| 66 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.35E-03 |
| 67 | GO:0006559: L-phenylalanine catabolic process | 1.35E-03 |
| 68 | GO:0006206: pyrimidine nucleobase metabolic process | 1.35E-03 |
| 69 | GO:0006139: nucleobase-containing compound metabolic process | 1.35E-03 |
| 70 | GO:0042793: transcription from plastid promoter | 1.35E-03 |
| 71 | GO:0016458: gene silencing | 1.35E-03 |
| 72 | GO:0080113: regulation of seed growth | 1.61E-03 |
| 73 | GO:0080036: regulation of cytokinin-activated signaling pathway | 1.61E-03 |
| 74 | GO:1901259: chloroplast rRNA processing | 1.61E-03 |
| 75 | GO:0030488: tRNA methylation | 1.61E-03 |
| 76 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 1.89E-03 |
| 77 | GO:0009610: response to symbiotic fungus | 1.89E-03 |
| 78 | GO:0006955: immune response | 1.89E-03 |
| 79 | GO:0010050: vegetative phase change | 1.89E-03 |
| 80 | GO:0006821: chloride transport | 1.89E-03 |
| 81 | GO:0030154: cell differentiation | 1.90E-03 |
| 82 | GO:0030162: regulation of proteolysis | 2.19E-03 |
| 83 | GO:0001522: pseudouridine synthesis | 2.19E-03 |
| 84 | GO:0009850: auxin metabolic process | 2.19E-03 |
| 85 | GO:0009416: response to light stimulus | 2.32E-03 |
| 86 | GO:0071482: cellular response to light stimulus | 2.50E-03 |
| 87 | GO:0010233: phloem transport | 2.50E-03 |
| 88 | GO:0010497: plasmodesmata-mediated intercellular transport | 2.50E-03 |
| 89 | GO:0006526: arginine biosynthetic process | 2.50E-03 |
| 90 | GO:0000373: Group II intron splicing | 2.82E-03 |
| 91 | GO:2000024: regulation of leaf development | 2.82E-03 |
| 92 | GO:0009638: phototropism | 3.16E-03 |
| 93 | GO:0035999: tetrahydrofolate interconversion | 3.16E-03 |
| 94 | GO:0010380: regulation of chlorophyll biosynthetic process | 3.16E-03 |
| 95 | GO:0030422: production of siRNA involved in RNA interference | 3.51E-03 |
| 96 | GO:0000103: sulfate assimilation | 3.51E-03 |
| 97 | GO:0009089: lysine biosynthetic process via diaminopimelate | 3.88E-03 |
| 98 | GO:0006352: DNA-templated transcription, initiation | 3.88E-03 |
| 99 | GO:0030036: actin cytoskeleton organization | 4.64E-03 |
| 100 | GO:0009767: photosynthetic electron transport chain | 4.64E-03 |
| 101 | GO:0009785: blue light signaling pathway | 4.64E-03 |
| 102 | GO:0048367: shoot system development | 4.79E-03 |
| 103 | GO:0006071: glycerol metabolic process | 5.88E-03 |
| 104 | GO:0005992: trehalose biosynthetic process | 6.32E-03 |
| 105 | GO:0019344: cysteine biosynthetic process | 6.32E-03 |
| 106 | GO:0051017: actin filament bundle assembly | 6.32E-03 |
| 107 | GO:0006825: copper ion transport | 6.76E-03 |
| 108 | GO:0016998: cell wall macromolecule catabolic process | 7.22E-03 |
| 109 | GO:0010227: floral organ abscission | 8.18E-03 |
| 110 | GO:0000226: microtubule cytoskeleton organization | 9.68E-03 |
| 111 | GO:0080022: primary root development | 9.68E-03 |
| 112 | GO:0009735: response to cytokinin | 9.79E-03 |
| 113 | GO:0009741: response to brassinosteroid | 1.02E-02 |
| 114 | GO:0009646: response to absence of light | 1.07E-02 |
| 115 | GO:0007166: cell surface receptor signaling pathway | 1.10E-02 |
| 116 | GO:0032502: developmental process | 1.24E-02 |
| 117 | GO:0031047: gene silencing by RNA | 1.24E-02 |
| 118 | GO:0051607: defense response to virus | 1.47E-02 |
| 119 | GO:0000910: cytokinesis | 1.47E-02 |
| 120 | GO:0009816: defense response to bacterium, incompatible interaction | 1.60E-02 |
| 121 | GO:0010411: xyloglucan metabolic process | 1.72E-02 |
| 122 | GO:0006499: N-terminal protein myristoylation | 1.99E-02 |
| 123 | GO:0046777: protein autophosphorylation | 1.99E-02 |
| 124 | GO:0009637: response to blue light | 2.19E-02 |
| 125 | GO:0006839: mitochondrial transport | 2.41E-02 |
| 126 | GO:0006631: fatty acid metabolic process | 2.48E-02 |
| 127 | GO:0016310: phosphorylation | 2.61E-02 |
| 128 | GO:0010114: response to red light | 2.63E-02 |
| 129 | GO:0042546: cell wall biogenesis | 2.70E-02 |
| 130 | GO:0048364: root development | 2.86E-02 |
| 131 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3.01E-02 |
| 132 | GO:0006857: oligopeptide transport | 3.41E-02 |
| 133 | GO:0006417: regulation of translation | 3.49E-02 |
| 134 | GO:0006508: proteolysis | 3.62E-02 |
| 135 | GO:0006096: glycolytic process | 3.66E-02 |
| 136 | GO:0048316: seed development | 3.74E-02 |
| 137 | GO:0009624: response to nematode | 4.17E-02 |
| 138 | GO:0006396: RNA processing | 4.26E-02 |
| 139 | GO:0006810: transport | 4.29E-02 |
| 140 | GO:0009742: brassinosteroid mediated signaling pathway | 4.35E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 2 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 3 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 4 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 5 | GO:0033612: receptor serine/threonine kinase binding | 2.00E-05 |
| 6 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.01E-05 |
| 7 | GO:0043621: protein self-association | 2.40E-05 |
| 8 | GO:0000156: phosphorelay response regulator activity | 7.64E-05 |
| 9 | GO:0008836: diaminopimelate decarboxylase activity | 1.20E-04 |
| 10 | GO:0042834: peptidoglycan binding | 1.20E-04 |
| 11 | GO:0004008: copper-exporting ATPase activity | 1.20E-04 |
| 12 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 1.20E-04 |
| 13 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 1.20E-04 |
| 14 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 1.96E-04 |
| 15 | GO:0004674: protein serine/threonine kinase activity | 2.70E-04 |
| 16 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 2.77E-04 |
| 17 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.77E-04 |
| 18 | GO:0009973: adenylyl-sulfate reductase activity | 2.77E-04 |
| 19 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 2.77E-04 |
| 20 | GO:0071917: triose-phosphate transmembrane transporter activity | 4.58E-04 |
| 21 | GO:0046524: sucrose-phosphate synthase activity | 4.58E-04 |
| 22 | GO:0070330: aromatase activity | 4.58E-04 |
| 23 | GO:0017150: tRNA dihydrouridine synthase activity | 4.58E-04 |
| 24 | GO:0045548: phenylalanine ammonia-lyase activity | 4.58E-04 |
| 25 | GO:0032549: ribonucleoside binding | 4.58E-04 |
| 26 | GO:0005524: ATP binding | 5.85E-04 |
| 27 | GO:0035197: siRNA binding | 6.57E-04 |
| 28 | GO:0015120: phosphoglycerate transmembrane transporter activity | 8.72E-04 |
| 29 | GO:0001053: plastid sigma factor activity | 8.72E-04 |
| 30 | GO:0004845: uracil phosphoribosyltransferase activity | 8.72E-04 |
| 31 | GO:0016987: sigma factor activity | 8.72E-04 |
| 32 | GO:0005253: anion channel activity | 8.72E-04 |
| 33 | GO:0004372: glycine hydroxymethyltransferase activity | 1.10E-03 |
| 34 | GO:0018685: alkane 1-monooxygenase activity | 1.10E-03 |
| 35 | GO:0008519: ammonium transmembrane transporter activity | 1.35E-03 |
| 36 | GO:0005247: voltage-gated chloride channel activity | 1.35E-03 |
| 37 | GO:2001070: starch binding | 1.35E-03 |
| 38 | GO:0004849: uridine kinase activity | 1.61E-03 |
| 39 | GO:0003872: 6-phosphofructokinase activity | 1.89E-03 |
| 40 | GO:0005375: copper ion transmembrane transporter activity | 2.50E-03 |
| 41 | GO:0008173: RNA methyltransferase activity | 2.50E-03 |
| 42 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 2.82E-03 |
| 43 | GO:0015112: nitrate transmembrane transporter activity | 3.16E-03 |
| 44 | GO:0004805: trehalose-phosphatase activity | 3.51E-03 |
| 45 | GO:0001054: RNA polymerase I activity | 3.88E-03 |
| 46 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.93E-03 |
| 47 | GO:0004521: endoribonuclease activity | 4.26E-03 |
| 48 | GO:0009982: pseudouridine synthase activity | 4.64E-03 |
| 49 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 4.64E-03 |
| 50 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.04E-03 |
| 51 | GO:0016301: kinase activity | 6.58E-03 |
| 52 | GO:0005345: purine nucleobase transmembrane transporter activity | 6.76E-03 |
| 53 | GO:0008408: 3'-5' exonuclease activity | 7.22E-03 |
| 54 | GO:0004176: ATP-dependent peptidase activity | 7.22E-03 |
| 55 | GO:0004252: serine-type endopeptidase activity | 7.75E-03 |
| 56 | GO:0005515: protein binding | 7.85E-03 |
| 57 | GO:0003727: single-stranded RNA binding | 8.66E-03 |
| 58 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 8.98E-03 |
| 59 | GO:0004527: exonuclease activity | 1.02E-02 |
| 60 | GO:0001085: RNA polymerase II transcription factor binding | 1.02E-02 |
| 61 | GO:0005355: glucose transmembrane transporter activity | 1.07E-02 |
| 62 | GO:0019901: protein kinase binding | 1.13E-02 |
| 63 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.18E-02 |
| 64 | GO:0004672: protein kinase activity | 1.21E-02 |
| 65 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.30E-02 |
| 66 | GO:0051015: actin filament binding | 1.30E-02 |
| 67 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.41E-02 |
| 68 | GO:0008237: metallopeptidase activity | 1.41E-02 |
| 69 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.56E-02 |
| 70 | GO:0003682: chromatin binding | 1.58E-02 |
| 71 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.72E-02 |
| 72 | GO:0004222: metalloendopeptidase activity | 1.99E-02 |
| 73 | GO:0046872: metal ion binding | 2.04E-02 |
| 74 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 2.05E-02 |
| 75 | GO:0004871: signal transducer activity | 2.33E-02 |
| 76 | GO:0031625: ubiquitin protein ligase binding | 3.49E-02 |
| 77 | GO:0016874: ligase activity | 4.00E-02 |
| 78 | GO:0003779: actin binding | 4.09E-02 |
| 79 | GO:0003729: mRNA binding | 4.36E-02 |
| 80 | GO:0019843: rRNA binding | 4.89E-02 |