co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G65960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0015979: photosynthesis	2.45E-16
3	GO:0009768: photosynthesis, light harvesting in photosystem I	3.19E-10
4	GO:0015995: chlorophyll biosynthetic process	6.80E-10
5	GO:0018298: protein-chromophore linkage	1.01E-09
6	GO:0032544: plastid translation	4.28E-08
7	GO:0009773: photosynthetic electron transport in photosystem I	2.25E-07
8	GO:0010207: photosystem II assembly	5.78E-07
9	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.06E-06
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.06E-06
11	GO:0009645: response to low light intensity stimulus	2.09E-06
12	GO:0006000: fructose metabolic process	7.54E-06
13	GO:0019252: starch biosynthetic process	8.25E-06
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.73E-05
15	GO:0006094: gluconeogenesis	2.39E-05
16	GO:0010021: amylopectin biosynthetic process	3.17E-05
17	GO:0010218: response to far red light	4.30E-05
18	GO:0009637: response to blue light	5.64E-05
19	GO:0009735: response to cytokinin	6.74E-05
20	GO:0010114: response to red light	9.05E-05
21	GO:0006412: translation	9.53E-05
22	GO:0009854: oxidative photosynthetic carbon pathway	1.04E-04
23	GO:0010196: nonphotochemical quenching	1.37E-04
24	GO:0048564: photosystem I assembly	1.76E-04
25	GO:0043953: protein transport by the Tat complex	2.09E-04
26	GO:0051775: response to redox state	2.09E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	2.09E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	2.09E-04
29	GO:0065002: intracellular protein transmembrane transport	2.09E-04
30	GO:0080093: regulation of photorespiration	2.09E-04
31	GO:0031998: regulation of fatty acid beta-oxidation	2.09E-04
32	GO:0034337: RNA folding	2.09E-04
33	GO:0006002: fructose 6-phosphate metabolic process	2.19E-04
34	GO:0071482: cellular response to light stimulus	2.19E-04
35	GO:0018119: peptidyl-cysteine S-nitrosylation	4.29E-04
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.66E-04
37	GO:0006108: malate metabolic process	5.58E-04
38	GO:0005986: sucrose biosynthetic process	5.58E-04
39	GO:0019253: reductive pentose-phosphate cycle	6.29E-04
40	GO:0090391: granum assembly	7.59E-04
41	GO:0006518: peptide metabolic process	7.59E-04
42	GO:0005977: glycogen metabolic process	7.59E-04
43	GO:0009644: response to high light intensity	9.27E-04
44	GO:0006165: nucleoside diphosphate phosphorylation	1.08E-03
45	GO:0006228: UTP biosynthetic process	1.08E-03
46	GO:1901332: negative regulation of lateral root development	1.08E-03
47	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.08E-03
48	GO:2001141: regulation of RNA biosynthetic process	1.08E-03
49	GO:0006107: oxaloacetate metabolic process	1.08E-03
50	GO:0006241: CTP biosynthetic process	1.08E-03
51	GO:0019748: secondary metabolic process	1.13E-03
52	GO:0006810: transport	1.16E-03
53	GO:0005975: carbohydrate metabolic process	1.24E-03
54	GO:0009658: chloroplast organization	1.27E-03
55	GO:0042254: ribosome biogenesis	1.31E-03
56	GO:0006734: NADH metabolic process	1.44E-03
57	GO:0015976: carbon utilization	1.44E-03
58	GO:0009765: photosynthesis, light harvesting	1.44E-03
59	GO:0006109: regulation of carbohydrate metabolic process	1.44E-03
60	GO:0006183: GTP biosynthetic process	1.44E-03
61	GO:0045727: positive regulation of translation	1.44E-03
62	GO:0042742: defense response to bacterium	1.82E-03
63	GO:0000304: response to singlet oxygen	1.83E-03
64	GO:0006656: phosphatidylcholine biosynthetic process	1.83E-03
65	GO:0043097: pyrimidine nucleoside salvage	1.83E-03
66	GO:0010236: plastoquinone biosynthetic process	1.83E-03
67	GO:0006097: glyoxylate cycle	1.83E-03
68	GO:0009107: lipoate biosynthetic process	1.83E-03
69	GO:0006206: pyrimidine nucleobase metabolic process	2.26E-03
70	GO:0010190: cytochrome b6f complex assembly	2.26E-03
71	GO:0050665: hydrogen peroxide biosynthetic process	2.26E-03
72	GO:0042549: photosystem II stabilization	2.26E-03
73	GO:1901259: chloroplast rRNA processing	2.71E-03
74	GO:0010189: vitamin E biosynthetic process	2.71E-03
75	GO:0010027: thylakoid membrane organization	2.98E-03
76	GO:0055114: oxidation-reduction process	3.01E-03
77	GO:1900057: positive regulation of leaf senescence	3.20E-03
78	GO:0009772: photosynthetic electron transport in photosystem II	3.20E-03
79	GO:0016311: dephosphorylation	3.69E-03
80	GO:0005978: glycogen biosynthetic process	3.71E-03
81	GO:0009642: response to light intensity	3.71E-03
82	GO:0010206: photosystem II repair	4.80E-03
83	GO:0006783: heme biosynthetic process	4.80E-03
84	GO:0006754: ATP biosynthetic process	4.80E-03
85	GO:0009853: photorespiration	4.91E-03
86	GO:0034599: cellular response to oxidative stress	5.13E-03
87	GO:0006099: tricarboxylic acid cycle	5.13E-03
88	GO:0005982: starch metabolic process	5.38E-03
89	GO:0006779: porphyrin-containing compound biosynthetic process	5.38E-03
90	GO:0006782: protoporphyrinogen IX biosynthetic process	5.99E-03
91	GO:0019684: photosynthesis, light reaction	6.62E-03
92	GO:0043085: positive regulation of catalytic activity	6.62E-03
93	GO:0006352: DNA-templated transcription, initiation	6.62E-03
94	GO:0009750: response to fructose	6.62E-03
95	GO:0005983: starch catabolic process	7.28E-03
96	GO:0009767: photosynthetic electron transport chain	7.96E-03
97	GO:0006364: rRNA processing	8.54E-03
98	GO:0019762: glucosinolate catabolic process	1.01E-02
99	GO:0000027: ribosomal large subunit assembly	1.09E-02
100	GO:0009409: response to cold	1.10E-02
101	GO:0031408: oxylipin biosynthetic process	1.25E-02
102	GO:0016226: iron-sulfur cluster assembly	1.33E-02
103	GO:0032259: methylation	1.35E-02
104	GO:0009411: response to UV	1.41E-02
105	GO:0009625: response to insect	1.41E-02
106	GO:0000413: protein peptidyl-prolyl isomerization	1.68E-02
107	GO:0042631: cellular response to water deprivation	1.68E-02
108	GO:0006662: glycerol ether metabolic process	1.77E-02
109	GO:0015986: ATP synthesis coupled proton transport	1.86E-02
110	GO:0000302: response to reactive oxygen species	2.06E-02
111	GO:0009734: auxin-activated signaling pathway	2.20E-02
112	GO:1901657: glycosyl compound metabolic process	2.25E-02
113	GO:0009567: double fertilization forming a zygote and endosperm	2.36E-02
114	GO:0042128: nitrate assimilation	2.89E-02
115	GO:0006950: response to stress	3.00E-02
116	GO:0009817: defense response to fungus, incompatible interaction	3.23E-02
117	GO:0010311: lateral root formation	3.34E-02
118	GO:0007568: aging	3.58E-02
119	GO:0016051: carbohydrate biosynthetic process	3.82E-02
120	GO:0030001: metal ion transport	4.19E-02
121	GO:0042542: response to hydrogen peroxide	4.45E-02
122	GO:0045454: cell redox homeostasis	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0004567: beta-mannosidase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
6	GO:0080082: esculin beta-glucosidase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
9	GO:0008974: phosphoribulokinase activity	0.00E+00
10	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
11	GO:0008465: glycerate dehydrogenase activity	0.00E+00
12	GO:0046408: chlorophyll synthetase activity	0.00E+00
13	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
14	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
15	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
16	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
17	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
18	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
19	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
20	GO:0090711: FMN hydrolase activity	0.00E+00
21	GO:0019843: rRNA binding	7.55E-12
22	GO:0031409: pigment binding	1.53E-10
23	GO:0016168: chlorophyll binding	4.48E-10
24	GO:0016630: protochlorophyllide reductase activity	2.06E-06
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.06E-06
26	GO:0003735: structural constituent of ribosome	7.83E-06
27	GO:0008266: poly(U) RNA binding	2.94E-05
28	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.17E-05
29	GO:0016615: malate dehydrogenase activity	7.50E-05
30	GO:0030060: L-malate dehydrogenase activity	1.04E-04
31	GO:0008746: NAD(P)+ transhydrogenase activity	2.09E-04
32	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.09E-04
33	GO:0080079: cellobiose glucosidase activity	2.09E-04
34	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.09E-04
35	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.66E-04
36	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.66E-04
37	GO:0019156: isoamylase activity	4.66E-04
38	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.66E-04
39	GO:0008883: glutamyl-tRNA reductase activity	4.66E-04
40	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.66E-04
41	GO:0016992: lipoate synthase activity	7.59E-04
42	GO:0043169: cation binding	7.59E-04
43	GO:0016851: magnesium chelatase activity	1.08E-03
44	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.08E-03
45	GO:0004550: nucleoside diphosphate kinase activity	1.08E-03
46	GO:0008097: 5S rRNA binding	1.08E-03
47	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.08E-03
48	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.08E-03
49	GO:0043495: protein anchor	1.44E-03
50	GO:0009011: starch synthase activity	1.44E-03
51	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.44E-03
52	GO:0008891: glycolate oxidase activity	1.44E-03
53	GO:0001053: plastid sigma factor activity	1.44E-03
54	GO:0008453: alanine-glyoxylate transaminase activity	1.44E-03
55	GO:0016987: sigma factor activity	1.44E-03
56	GO:0003959: NADPH dehydrogenase activity	1.83E-03
57	GO:0008374: O-acyltransferase activity	1.83E-03
58	GO:0048038: quinone binding	2.07E-03
59	GO:0004130: cytochrome-c peroxidase activity	2.26E-03
60	GO:0042578: phosphoric ester hydrolase activity	2.26E-03
61	GO:0004556: alpha-amylase activity	2.26E-03
62	GO:0004332: fructose-bisphosphate aldolase activity	2.26E-03
63	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.71E-03
64	GO:0004849: uridine kinase activity	2.71E-03
65	GO:0051920: peroxiredoxin activity	2.71E-03
66	GO:0019899: enzyme binding	3.20E-03
67	GO:0004033: aldo-keto reductase (NADP) activity	3.71E-03
68	GO:0016209: antioxidant activity	3.71E-03
69	GO:0004222: metalloendopeptidase activity	4.28E-03
70	GO:0005515: protein binding	4.38E-03
71	GO:0003746: translation elongation factor activity	4.91E-03
72	GO:0042802: identical protein binding	5.14E-03
73	GO:0030234: enzyme regulator activity	5.99E-03
74	GO:0008047: enzyme activator activity	5.99E-03
75	GO:0004185: serine-type carboxypeptidase activity	6.33E-03
76	GO:0004601: peroxidase activity	6.61E-03
77	GO:0051537: 2 iron, 2 sulfur cluster binding	6.85E-03
78	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.39E-03
79	GO:0004089: carbonate dehydratase activity	7.96E-03
80	GO:0031072: heat shock protein binding	7.96E-03
81	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.04E-02
82	GO:0016491: oxidoreductase activity	1.05E-02
83	GO:0051536: iron-sulfur cluster binding	1.09E-02
84	GO:0004857: enzyme inhibitor activity	1.09E-02
85	GO:0046872: metal ion binding	1.13E-02
86	GO:0043424: protein histidine kinase binding	1.17E-02
87	GO:0022891: substrate-specific transmembrane transporter activity	1.41E-02
88	GO:0009055: electron carrier activity	1.56E-02
89	GO:0047134: protein-disulfide reductase activity	1.59E-02
90	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.77E-02
91	GO:0010181: FMN binding	1.86E-02
92	GO:0050662: coenzyme binding	1.86E-02
93	GO:0004791: thioredoxin-disulfide reductase activity	1.86E-02
94	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-02
95	GO:0016787: hydrolase activity	2.40E-02
96	GO:0004721: phosphoprotein phosphatase activity	3.00E-02
97	GO:0102483: scopolin beta-glucosidase activity	3.00E-02
98	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.11E-02
99	GO:0008168: methyltransferase activity	3.15E-02
100	GO:0003993: acid phosphatase activity	3.94E-02
101	GO:0008422: beta-glucosidase activity	4.07E-02
102	GO:0050661: NADP binding	4.19E-02
103	GO:0043621: protein self-association	4.84E-02