Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G65070

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905177: tracheary element differentiation0.00E+00
2GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:0006429: leucyl-tRNA aminoacylation0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0009606: tropism0.00E+00
12GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
13GO:0009658: chloroplast organization2.51E-07
14GO:0042793: transcription from plastid promoter3.00E-06
15GO:1901259: chloroplast rRNA processing5.19E-06
16GO:0009451: RNA modification8.01E-06
17GO:0009657: plastid organization1.78E-05
18GO:0010239: chloroplast mRNA processing4.51E-05
19GO:0006418: tRNA aminoacylation for protein translation1.86E-04
20GO:0048437: floral organ development3.16E-04
21GO:0009793: embryo development ending in seed dormancy3.24E-04
22GO:0010063: positive regulation of trichoblast fate specification3.60E-04
23GO:0010480: microsporocyte differentiation3.60E-04
24GO:0042371: vitamin K biosynthetic process3.60E-04
25GO:0006436: tryptophanyl-tRNA aminoacylation3.60E-04
26GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.60E-04
27GO:0006419: alanyl-tRNA aminoacylation3.60E-04
28GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.60E-04
29GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.60E-04
30GO:0070509: calcium ion import3.60E-04
31GO:0006353: DNA-templated transcription, termination3.97E-04
32GO:0007389: pattern specification process4.86E-04
33GO:0000373: Group II intron splicing5.82E-04
34GO:0000902: cell morphogenesis5.82E-04
35GO:0032502: developmental process5.98E-04
36GO:0009416: response to light stimulus6.19E-04
37GO:0018026: peptidyl-lysine monomethylation7.83E-04
38GO:0009662: etioplast organization7.83E-04
39GO:0009220: pyrimidine ribonucleotide biosynthetic process7.83E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process7.83E-04
41GO:2000123: positive regulation of stomatal complex development7.83E-04
42GO:0060359: response to ammonium ion7.83E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process7.83E-04
44GO:1900871: chloroplast mRNA modification7.83E-04
45GO:0010027: thylakoid membrane organization8.76E-04
46GO:0045037: protein import into chloroplast stroma1.05E-03
47GO:0010623: programmed cell death involved in cell development1.27E-03
48GO:0042780: tRNA 3'-end processing1.27E-03
49GO:0043157: response to cation stress1.27E-03
50GO:0005977: glycogen metabolic process1.27E-03
51GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.27E-03
52GO:0048281: inflorescence morphogenesis1.27E-03
53GO:0006954: inflammatory response1.27E-03
54GO:0010207: photosystem II assembly1.34E-03
55GO:0009734: auxin-activated signaling pathway1.39E-03
56GO:0070588: calcium ion transmembrane transport1.50E-03
57GO:0009790: embryo development1.70E-03
58GO:0051289: protein homotetramerization1.83E-03
59GO:0016556: mRNA modification1.83E-03
60GO:1902476: chloride transmembrane transport1.83E-03
61GO:0010071: root meristem specification1.83E-03
62GO:0051513: regulation of monopolar cell growth1.83E-03
63GO:0007231: osmosensory signaling pathway1.83E-03
64GO:0044211: CTP salvage1.83E-03
65GO:0019048: modulation by virus of host morphology or physiology1.83E-03
66GO:0046739: transport of virus in multicellular host1.83E-03
67GO:0031048: chromatin silencing by small RNA1.83E-03
68GO:0010148: transpiration1.83E-03
69GO:2000904: regulation of starch metabolic process1.83E-03
70GO:0009926: auxin polar transport2.27E-03
71GO:0044206: UMP salvage2.45E-03
72GO:0044205: 'de novo' UMP biosynthetic process2.45E-03
73GO:0010021: amylopectin biosynthetic process2.45E-03
74GO:0006808: regulation of nitrogen utilization2.45E-03
75GO:0042274: ribosomal small subunit biogenesis2.45E-03
76GO:0033500: carbohydrate homeostasis2.45E-03
77GO:2000038: regulation of stomatal complex development2.45E-03
78GO:0051567: histone H3-K9 methylation2.45E-03
79GO:0010508: positive regulation of autophagy2.45E-03
80GO:0010082: regulation of root meristem growth2.69E-03
81GO:0032543: mitochondrial translation3.14E-03
82GO:0010236: plastoquinone biosynthetic process3.14E-03
83GO:0048497: maintenance of floral organ identity3.14E-03
84GO:0010158: abaxial cell fate specification3.14E-03
85GO:0010375: stomatal complex patterning3.14E-03
86GO:0008033: tRNA processing3.42E-03
87GO:0051603: proteolysis involved in cellular protein catabolic process3.47E-03
88GO:0009228: thiamine biosynthetic process3.88E-03
89GO:0016458: gene silencing3.88E-03
90GO:0050665: hydrogen peroxide biosynthetic process3.88E-03
91GO:0010405: arabinogalactan protein metabolic process3.88E-03
92GO:0009959: negative gravitropism3.88E-03
93GO:0009913: epidermal cell differentiation3.88E-03
94GO:0006655: phosphatidylglycerol biosynthetic process3.88E-03
95GO:0010315: auxin efflux3.88E-03
96GO:0006206: pyrimidine nucleobase metabolic process3.88E-03
97GO:0018258: protein O-linked glycosylation via hydroxyproline3.88E-03
98GO:0009942: longitudinal axis specification4.67E-03
99GO:0009099: valine biosynthetic process4.67E-03
100GO:0030488: tRNA methylation4.67E-03
101GO:0009854: oxidative photosynthetic carbon pathway4.67E-03
102GO:0042372: phylloquinone biosynthetic process4.67E-03
103GO:0009082: branched-chain amino acid biosynthetic process4.67E-03
104GO:0017148: negative regulation of translation4.67E-03
105GO:0009630: gravitropism4.86E-03
106GO:0006508: proteolysis5.26E-03
107GO:0010444: guard mother cell differentiation5.52E-03
108GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.52E-03
109GO:0006400: tRNA modification5.52E-03
110GO:0010103: stomatal complex morphogenesis5.52E-03
111GO:0048528: post-embryonic root development5.52E-03
112GO:0009772: photosynthetic electron transport in photosystem II5.52E-03
113GO:0010050: vegetative phase change5.52E-03
114GO:0006821: chloride transport5.52E-03
115GO:0070370: cellular heat acclimation5.52E-03
116GO:0010252: auxin homeostasis5.52E-03
117GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.26E-03
118GO:0048766: root hair initiation6.41E-03
119GO:0070413: trehalose metabolism in response to stress6.41E-03
120GO:0048564: photosystem I assembly6.41E-03
121GO:0001522: pseudouridine synthesis6.41E-03
122GO:0009850: auxin metabolic process6.41E-03
123GO:0042255: ribosome assembly6.41E-03
124GO:0046620: regulation of organ growth6.41E-03
125GO:0005975: carbohydrate metabolic process7.19E-03
126GO:0009097: isoleucine biosynthetic process7.36E-03
127GO:0010204: defense response signaling pathway, resistance gene-independent7.36E-03
128GO:0009827: plant-type cell wall modification7.36E-03
129GO:0001558: regulation of cell growth7.36E-03
130GO:0010497: plasmodesmata-mediated intercellular transport7.36E-03
131GO:0006098: pentose-phosphate shunt8.35E-03
132GO:0048481: plant ovule development8.60E-03
133GO:0009638: phototropism9.38E-03
134GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.38E-03
135GO:0040008: regulation of growth9.88E-03
136GO:0030422: production of siRNA involved in RNA interference1.05E-02
137GO:0045036: protein targeting to chloroplast1.05E-02
138GO:0009641: shade avoidance1.05E-02
139GO:0006259: DNA metabolic process1.05E-02
140GO:0006535: cysteine biosynthetic process from serine1.05E-02
141GO:0048364: root development1.15E-02
142GO:0048229: gametophyte development1.16E-02
143GO:0006816: calcium ion transport1.16E-02
144GO:0006265: DNA topological change1.16E-02
145GO:0009089: lysine biosynthetic process via diaminopimelate1.16E-02
146GO:0009073: aromatic amino acid family biosynthetic process1.16E-02
147GO:0010582: floral meristem determinacy1.28E-02
148GO:0016024: CDP-diacylglycerol biosynthetic process1.28E-02
149GO:0009691: cytokinin biosynthetic process1.40E-02
150GO:0050826: response to freezing1.40E-02
151GO:0010075: regulation of meristem growth1.40E-02
152GO:0006094: gluconeogenesis1.40E-02
153GO:0009767: photosynthetic electron transport chain1.40E-02
154GO:0009785: blue light signaling pathway1.40E-02
155GO:0009934: regulation of meristem structural organization1.52E-02
156GO:0080188: RNA-directed DNA methylation1.65E-02
157GO:0042254: ribosome biogenesis1.87E-02
158GO:0006364: rRNA processing1.91E-02
159GO:0005992: trehalose biosynthetic process1.92E-02
160GO:0019344: cysteine biosynthetic process1.92E-02
161GO:0009116: nucleoside metabolic process1.92E-02
162GO:0009944: polarity specification of adaxial/abaxial axis1.92E-02
163GO:0006825: copper ion transport2.06E-02
164GO:0051302: regulation of cell division2.06E-02
165GO:0006306: DNA methylation2.20E-02
166GO:0048367: shoot system development2.33E-02
167GO:0048316: seed development2.33E-02
168GO:0006730: one-carbon metabolic process2.35E-02
169GO:0080167: response to karrikin2.39E-02
170GO:0001944: vasculature development2.50E-02
171GO:0071555: cell wall organization2.58E-02
172GO:0009553: embryo sac development2.64E-02
173GO:0010089: xylem development2.65E-02
174GO:0042127: regulation of cell proliferation2.65E-02
175GO:0009742: brassinosteroid mediated signaling pathway2.88E-02
176GO:0048653: anther development2.97E-02
177GO:0009733: response to auxin3.12E-02
178GO:0010305: leaf vascular tissue pattern formation3.13E-02
179GO:0006662: glycerol ether metabolic process3.13E-02
180GO:0048868: pollen tube development3.13E-02
181GO:0006342: chromatin silencing3.13E-02
182GO:0009741: response to brassinosteroid3.13E-02
183GO:0009958: positive gravitropism3.13E-02
184GO:0048544: recognition of pollen3.30E-02
185GO:0007059: chromosome segregation3.30E-02
186GO:0009646: response to absence of light3.30E-02
187GO:0019252: starch biosynthetic process3.47E-02
188GO:0008654: phospholipid biosynthetic process3.47E-02
189GO:0048825: cotyledon development3.47E-02
190GO:0009058: biosynthetic process3.58E-02
191GO:0002229: defense response to oomycetes3.64E-02
192GO:0010583: response to cyclopentenone3.81E-02
193GO:0042744: hydrogen peroxide catabolic process3.87E-02
194GO:0009567: double fertilization forming a zygote and endosperm4.17E-02
195GO:0007267: cell-cell signaling4.35E-02
196GO:0051607: defense response to virus4.54E-02
197GO:0055114: oxidation-reduction process4.61E-02
198GO:0007623: circadian rhythm4.68E-02
199GO:0001666: response to hypoxia4.72E-02
200GO:0009816: defense response to bacterium, incompatible interaction4.91E-02
RankGO TermAdjusted P value
1GO:0004823: leucine-tRNA ligase activity0.00E+00
2GO:0047661: amino-acid racemase activity0.00E+00
3GO:0004056: argininosuccinate lyase activity0.00E+00
4GO:0015267: channel activity0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
7GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
8GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
9GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
10GO:0017150: tRNA dihydrouridine synthase activity2.05E-05
11GO:0004519: endonuclease activity3.41E-05
12GO:0001872: (1->3)-beta-D-glucan binding4.51E-05
13GO:0019843: rRNA binding2.43E-04
14GO:0004812: aminoacyl-tRNA ligase activity3.42E-04
15GO:0052381: tRNA dimethylallyltransferase activity3.60E-04
16GO:0004160: dihydroxy-acid dehydratase activity3.60E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.60E-04
18GO:0004830: tryptophan-tRNA ligase activity3.60E-04
19GO:0010285: L,L-diaminopimelate aminotransferase activity3.60E-04
20GO:0004813: alanine-tRNA ligase activity3.60E-04
21GO:0004008: copper-exporting ATPase activity3.60E-04
22GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity3.60E-04
23GO:0003723: RNA binding4.24E-04
24GO:0009672: auxin:proton symporter activity6.87E-04
25GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.83E-04
26GO:0019156: isoamylase activity7.83E-04
27GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.14E-03
28GO:0005262: calcium channel activity1.19E-03
29GO:0010329: auxin efflux transmembrane transporter activity1.19E-03
30GO:0070330: aromatase activity1.27E-03
31GO:0002161: aminoacyl-tRNA editing activity1.27E-03
32GO:0042781: 3'-tRNA processing endoribonuclease activity1.27E-03
33GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.34E-03
34GO:0004222: metalloendopeptidase activity1.38E-03
35GO:0035197: siRNA binding1.83E-03
36GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.83E-03
37GO:0043023: ribosomal large subunit binding1.83E-03
38GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.83E-03
39GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.83E-03
40GO:0004176: ATP-dependent peptidase activity2.25E-03
41GO:0004185: serine-type carboxypeptidase activity2.27E-03
42GO:0005253: anion channel activity2.45E-03
43GO:0004930: G-protein coupled receptor activity2.45E-03
44GO:0042277: peptide binding2.45E-03
45GO:0008891: glycolate oxidase activity2.45E-03
46GO:0004659: prenyltransferase activity2.45E-03
47GO:0016279: protein-lysine N-methyltransferase activity2.45E-03
48GO:0004845: uracil phosphoribosyltransferase activity2.45E-03
49GO:0016836: hydro-lyase activity2.45E-03
50GO:0019199: transmembrane receptor protein kinase activity2.45E-03
51GO:0018685: alkane 1-monooxygenase activity3.14E-03
52GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.14E-03
53GO:0004888: transmembrane signaling receptor activity3.14E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor3.14E-03
55GO:0005247: voltage-gated chloride channel activity3.88E-03
56GO:0004605: phosphatidate cytidylyltransferase activity3.88E-03
57GO:0080030: methyl indole-3-acetate esterase activity3.88E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity3.88E-03
59GO:0004332: fructose-bisphosphate aldolase activity3.88E-03
60GO:0004556: alpha-amylase activity3.88E-03
61GO:0004656: procollagen-proline 4-dioxygenase activity4.67E-03
62GO:0004124: cysteine synthase activity4.67E-03
63GO:0008195: phosphatidate phosphatase activity4.67E-03
64GO:0004849: uridine kinase activity4.67E-03
65GO:0008237: metallopeptidase activity5.86E-03
66GO:0016597: amino acid binding6.21E-03
67GO:0043022: ribosome binding6.41E-03
68GO:0008173: RNA methyltransferase activity7.36E-03
69GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.36E-03
70GO:0005375: copper ion transmembrane transporter activity7.36E-03
71GO:0030247: polysaccharide binding7.76E-03
72GO:0004805: trehalose-phosphatase activity1.05E-02
73GO:0051539: 4 iron, 4 sulfur cluster binding1.25E-02
74GO:0004521: endoribonuclease activity1.28E-02
75GO:0000049: tRNA binding1.28E-02
76GO:0031072: heat shock protein binding1.40E-02
77GO:0009982: pseudouridine synthase activity1.40E-02
78GO:0004565: beta-galactosidase activity1.40E-02
79GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.40E-02
80GO:0008168: methyltransferase activity1.74E-02
81GO:0005525: GTP binding1.81E-02
82GO:0004601: peroxidase activity1.83E-02
83GO:0031418: L-ascorbic acid binding1.92E-02
84GO:0050660: flavin adenine dinucleotide binding2.19E-02
85GO:0008408: 3'-5' exonuclease activity2.20E-02
86GO:0033612: receptor serine/threonine kinase binding2.20E-02
87GO:0004650: polygalacturonase activity2.48E-02
88GO:0003727: single-stranded RNA binding2.65E-02
89GO:0047134: protein-disulfide reductase activity2.81E-02
90GO:0008026: ATP-dependent helicase activity2.88E-02
91GO:0004527: exonuclease activity3.13E-02
92GO:0003735: structural constituent of ribosome3.27E-02
93GO:0004791: thioredoxin-disulfide reductase activity3.30E-02
94GO:0010181: FMN binding3.30E-02
95GO:0019901: protein kinase binding3.47E-02
96GO:0016762: xyloglucan:xyloglucosyl transferase activity3.64E-02
97GO:0003924: GTPase activity3.89E-02
98GO:0000156: phosphorelay response regulator activity3.99E-02
99GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.99E-02
100GO:0016791: phosphatase activity4.17E-02
101GO:0005524: ATP binding4.24E-02
102GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.35E-02
103GO:0008483: transaminase activity4.35E-02
104GO:0016722: oxidoreductase activity, oxidizing metal ions4.35E-02
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Gene type



Gene DE type