GO Enrichment Analysis of Co-expressed Genes with
AT1G65010
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 2 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 3 | GO:0009606: tropism | 0.00E+00 |
| 4 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 5 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 6 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 7 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 8 | GO:0009416: response to light stimulus | 6.03E-05 |
| 9 | GO:0042793: transcription from plastid promoter | 6.48E-05 |
| 10 | GO:0010305: leaf vascular tissue pattern formation | 1.19E-04 |
| 11 | GO:0009658: chloroplast organization | 1.76E-04 |
| 12 | GO:1903866: palisade mesophyll development | 1.91E-04 |
| 13 | GO:0010063: positive regulation of trichoblast fate specification | 1.91E-04 |
| 14 | GO:0000373: Group II intron splicing | 2.33E-04 |
| 15 | GO:1900865: chloroplast RNA modification | 2.78E-04 |
| 16 | GO:0048829: root cap development | 3.27E-04 |
| 17 | GO:0010541: acropetal auxin transport | 4.29E-04 |
| 18 | GO:0018026: peptidyl-lysine monomethylation | 4.29E-04 |
| 19 | GO:1900033: negative regulation of trichome patterning | 4.29E-04 |
| 20 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.29E-04 |
| 21 | GO:0080009: mRNA methylation | 4.29E-04 |
| 22 | GO:0051214: RNA virus induced gene silencing | 4.29E-04 |
| 23 | GO:2000123: positive regulation of stomatal complex development | 4.29E-04 |
| 24 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.29E-04 |
| 25 | GO:0010588: cotyledon vascular tissue pattern formation | 4.93E-04 |
| 26 | GO:0090391: granum assembly | 6.99E-04 |
| 27 | GO:0006518: peptide metabolic process | 6.99E-04 |
| 28 | GO:0030029: actin filament-based process | 6.99E-04 |
| 29 | GO:0001927: exocyst assembly | 6.99E-04 |
| 30 | GO:0003333: amino acid transmembrane transport | 9.21E-04 |
| 31 | GO:0051601: exocyst localization | 9.97E-04 |
| 32 | GO:1902290: positive regulation of defense response to oomycetes | 9.97E-04 |
| 33 | GO:0010371: regulation of gibberellin biosynthetic process | 9.97E-04 |
| 34 | GO:1902476: chloride transmembrane transport | 9.97E-04 |
| 35 | GO:0010071: root meristem specification | 9.97E-04 |
| 36 | GO:0051513: regulation of monopolar cell growth | 9.97E-04 |
| 37 | GO:0009102: biotin biosynthetic process | 9.97E-04 |
| 38 | GO:0009734: auxin-activated signaling pathway | 1.00E-03 |
| 39 | GO:2000038: regulation of stomatal complex development | 1.32E-03 |
| 40 | GO:0006479: protein methylation | 1.32E-03 |
| 41 | GO:0048629: trichome patterning | 1.32E-03 |
| 42 | GO:1900864: mitochondrial RNA modification | 1.32E-03 |
| 43 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.32E-03 |
| 44 | GO:0048367: shoot system development | 1.33E-03 |
| 45 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.53E-03 |
| 46 | GO:0048497: maintenance of floral organ identity | 1.68E-03 |
| 47 | GO:0010375: stomatal complex patterning | 1.68E-03 |
| 48 | GO:0080156: mitochondrial mRNA modification | 1.83E-03 |
| 49 | GO:0010315: auxin efflux | 2.07E-03 |
| 50 | GO:0009913: epidermal cell differentiation | 2.07E-03 |
| 51 | GO:0009643: photosynthetic acclimation | 2.07E-03 |
| 52 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.07E-03 |
| 53 | GO:0042549: photosystem II stabilization | 2.07E-03 |
| 54 | GO:0009959: negative gravitropism | 2.07E-03 |
| 55 | GO:0016554: cytidine to uridine editing | 2.07E-03 |
| 56 | GO:1901259: chloroplast rRNA processing | 2.49E-03 |
| 57 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.49E-03 |
| 58 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.49E-03 |
| 59 | GO:0010067: procambium histogenesis | 2.49E-03 |
| 60 | GO:0010027: thylakoid membrane organization | 2.63E-03 |
| 61 | GO:0006821: chloride transport | 2.93E-03 |
| 62 | GO:0010103: stomatal complex morphogenesis | 2.93E-03 |
| 63 | GO:0048437: floral organ development | 2.93E-03 |
| 64 | GO:0040008: regulation of growth | 3.04E-03 |
| 65 | GO:0005975: carbohydrate metabolic process | 3.22E-03 |
| 66 | GO:0042255: ribosome assembly | 3.40E-03 |
| 67 | GO:0006353: DNA-templated transcription, termination | 3.40E-03 |
| 68 | GO:0048766: root hair initiation | 3.40E-03 |
| 69 | GO:0048481: plant ovule development | 3.42E-03 |
| 70 | GO:0001510: RNA methylation | 3.88E-03 |
| 71 | GO:0019430: removal of superoxide radicals | 3.88E-03 |
| 72 | GO:0007389: pattern specification process | 3.88E-03 |
| 73 | GO:0060321: acceptance of pollen | 3.88E-03 |
| 74 | GO:0006865: amino acid transport | 4.14E-03 |
| 75 | GO:0048589: developmental growth | 4.40E-03 |
| 76 | GO:0000902: cell morphogenesis | 4.40E-03 |
| 77 | GO:0010267: production of ta-siRNAs involved in RNA interference | 4.93E-03 |
| 78 | GO:0006349: regulation of gene expression by genetic imprinting | 4.93E-03 |
| 79 | GO:0016571: histone methylation | 4.93E-03 |
| 80 | GO:0016573: histone acetylation | 4.93E-03 |
| 81 | GO:1900426: positive regulation of defense response to bacterium | 4.93E-03 |
| 82 | GO:0006468: protein phosphorylation | 5.02E-03 |
| 83 | GO:0006535: cysteine biosynthetic process from serine | 5.48E-03 |
| 84 | GO:0030422: production of siRNA involved in RNA interference | 5.48E-03 |
| 85 | GO:0010048: vernalization response | 5.48E-03 |
| 86 | GO:0010216: maintenance of DNA methylation | 6.06E-03 |
| 87 | GO:0046856: phosphatidylinositol dephosphorylation | 6.06E-03 |
| 88 | GO:0010152: pollen maturation | 6.66E-03 |
| 89 | GO:0010102: lateral root morphogenesis | 7.28E-03 |
| 90 | GO:0009691: cytokinin biosynthetic process | 7.28E-03 |
| 91 | GO:0010020: chloroplast fission | 7.91E-03 |
| 92 | GO:0010223: secondary shoot formation | 7.91E-03 |
| 93 | GO:0010540: basipetal auxin transport | 7.91E-03 |
| 94 | GO:0009266: response to temperature stimulus | 7.91E-03 |
| 95 | GO:0048768: root hair cell tip growth | 7.91E-03 |
| 96 | GO:0045892: negative regulation of transcription, DNA-templated | 9.47E-03 |
| 97 | GO:0006338: chromatin remodeling | 9.94E-03 |
| 98 | GO:0080147: root hair cell development | 9.94E-03 |
| 99 | GO:2000377: regulation of reactive oxygen species metabolic process | 9.94E-03 |
| 100 | GO:0019344: cysteine biosynthetic process | 9.94E-03 |
| 101 | GO:0016569: covalent chromatin modification | 1.01E-02 |
| 102 | GO:0010431: seed maturation | 1.14E-02 |
| 103 | GO:0010082: regulation of root meristem growth | 1.29E-02 |
| 104 | GO:0001944: vasculature development | 1.29E-02 |
| 105 | GO:0042127: regulation of cell proliferation | 1.37E-02 |
| 106 | GO:0010089: xylem development | 1.37E-02 |
| 107 | GO:0048443: stamen development | 1.37E-02 |
| 108 | GO:0009058: biosynthetic process | 1.42E-02 |
| 109 | GO:0009845: seed germination | 1.45E-02 |
| 110 | GO:0080022: primary root development | 1.53E-02 |
| 111 | GO:0008033: tRNA processing | 1.53E-02 |
| 112 | GO:0010087: phloem or xylem histogenesis | 1.53E-02 |
| 113 | GO:0071472: cellular response to salt stress | 1.62E-02 |
| 114 | GO:0009958: positive gravitropism | 1.62E-02 |
| 115 | GO:0009741: response to brassinosteroid | 1.62E-02 |
| 116 | GO:0009960: endosperm development | 1.62E-02 |
| 117 | GO:0007018: microtubule-based movement | 1.70E-02 |
| 118 | GO:0009646: response to absence of light | 1.70E-02 |
| 119 | GO:0048825: cotyledon development | 1.79E-02 |
| 120 | GO:0009451: RNA modification | 1.90E-02 |
| 121 | GO:0010583: response to cyclopentenone | 1.97E-02 |
| 122 | GO:0031047: gene silencing by RNA | 1.97E-02 |
| 123 | GO:0032502: developmental process | 1.97E-02 |
| 124 | GO:0009630: gravitropism | 1.97E-02 |
| 125 | GO:0010252: auxin homeostasis | 2.15E-02 |
| 126 | GO:0009639: response to red or far red light | 2.15E-02 |
| 127 | GO:0009733: response to auxin | 2.16E-02 |
| 128 | GO:0007267: cell-cell signaling | 2.25E-02 |
| 129 | GO:0051607: defense response to virus | 2.34E-02 |
| 130 | GO:0051301: cell division | 2.78E-02 |
| 131 | GO:0045893: positive regulation of transcription, DNA-templated | 2.97E-02 |
| 132 | GO:0048767: root hair elongation | 3.05E-02 |
| 133 | GO:0009910: negative regulation of flower development | 3.27E-02 |
| 134 | GO:0016567: protein ubiquitination | 3.47E-02 |
| 135 | GO:0008283: cell proliferation | 4.18E-02 |
| 136 | GO:0009926: auxin polar transport | 4.18E-02 |
| 137 | GO:0006260: DNA replication | 4.78E-02 |
| 138 | GO:0031347: regulation of defense response | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008710: 8-amino-7-oxononanoate synthase activity | 0.00E+00 |
| 2 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 3 | GO:0016428: tRNA (cytosine-5-)-methyltransferase activity | 0.00E+00 |
| 4 | GO:0052381: tRNA dimethylallyltransferase activity | 1.91E-04 |
| 5 | GO:0016274: protein-arginine N-methyltransferase activity | 1.91E-04 |
| 6 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.91E-04 |
| 7 | GO:0004016: adenylate cyclase activity | 1.91E-04 |
| 8 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.91E-04 |
| 9 | GO:0003723: RNA binding | 2.62E-04 |
| 10 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.29E-04 |
| 11 | GO:0004222: metalloendopeptidase activity | 4.36E-04 |
| 12 | GO:0003725: double-stranded RNA binding | 4.93E-04 |
| 13 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 5.55E-04 |
| 14 | GO:0004519: endonuclease activity | 6.38E-04 |
| 15 | GO:0017150: tRNA dihydrouridine synthase activity | 6.99E-04 |
| 16 | GO:0008168: methyltransferase activity | 9.92E-04 |
| 17 | GO:0009041: uridylate kinase activity | 9.97E-04 |
| 18 | GO:0001872: (1->3)-beta-D-glucan binding | 9.97E-04 |
| 19 | GO:0003727: single-stranded RNA binding | 1.18E-03 |
| 20 | GO:0005253: anion channel activity | 1.32E-03 |
| 21 | GO:0016279: protein-lysine N-methyltransferase activity | 1.32E-03 |
| 22 | GO:0010011: auxin binding | 1.32E-03 |
| 23 | GO:0010328: auxin influx transmembrane transporter activity | 1.32E-03 |
| 24 | GO:0019901: protein kinase binding | 1.71E-03 |
| 25 | GO:0004784: superoxide dismutase activity | 2.07E-03 |
| 26 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.07E-03 |
| 27 | GO:0005247: voltage-gated chloride channel activity | 2.07E-03 |
| 28 | GO:0004124: cysteine synthase activity | 2.49E-03 |
| 29 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 2.53E-03 |
| 30 | GO:0004525: ribonuclease III activity | 3.40E-03 |
| 31 | GO:0004674: protein serine/threonine kinase activity | 4.43E-03 |
| 32 | GO:0009672: auxin:proton symporter activity | 4.93E-03 |
| 33 | GO:0015293: symporter activity | 6.26E-03 |
| 34 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.66E-03 |
| 35 | GO:0010329: auxin efflux transmembrane transporter activity | 7.28E-03 |
| 36 | GO:0015171: amino acid transmembrane transporter activity | 8.31E-03 |
| 37 | GO:0005524: ATP binding | 9.14E-03 |
| 38 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 9.55E-03 |
| 39 | GO:0004650: polygalacturonase activity | 9.76E-03 |
| 40 | GO:0004871: signal transducer activity | 9.85E-03 |
| 41 | GO:0003779: actin binding | 1.04E-02 |
| 42 | GO:0004176: ATP-dependent peptidase activity | 1.14E-02 |
| 43 | GO:0004386: helicase activity | 1.17E-02 |
| 44 | GO:0019843: rRNA binding | 1.34E-02 |
| 45 | GO:0018024: histone-lysine N-methyltransferase activity | 1.45E-02 |
| 46 | GO:0030170: pyridoxal phosphate binding | 1.49E-02 |
| 47 | GO:0001085: RNA polymerase II transcription factor binding | 1.62E-02 |
| 48 | GO:0048038: quinone binding | 1.88E-02 |
| 49 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.25E-02 |
| 50 | GO:0008237: metallopeptidase activity | 2.25E-02 |
| 51 | GO:0005200: structural constituent of cytoskeleton | 2.25E-02 |
| 52 | GO:0008483: transaminase activity | 2.25E-02 |
| 53 | GO:0030247: polysaccharide binding | 2.74E-02 |
| 54 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.16E-02 |
| 55 | GO:0004672: protein kinase activity | 3.21E-02 |
| 56 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.27E-02 |
| 57 | GO:0003697: single-stranded DNA binding | 3.49E-02 |
| 58 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.83E-02 |
| 59 | GO:0005515: protein binding | 4.53E-02 |
| 60 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 4.79E-02 |