Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G64640

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042794: rRNA transcription from plastid promoter0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
4GO:0045014: negative regulation of transcription by glucose0.00E+00
5GO:0000819: sister chromatid segregation0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:0009606: tropism0.00E+00
8GO:0090322: regulation of superoxide metabolic process0.00E+00
9GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
10GO:1903224: regulation of endodermal cell differentiation0.00E+00
11GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
12GO:0080127: fruit septum development0.00E+00
13GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
14GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
15GO:0045184: establishment of protein localization0.00E+00
16GO:0044774: mitotic DNA integrity checkpoint0.00E+00
17GO:0090615: mitochondrial mRNA processing0.00E+00
18GO:0000492: box C/D snoRNP assembly0.00E+00
19GO:0042793: transcription from plastid promoter1.54E-07
20GO:0009451: RNA modification1.71E-07
21GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.21E-07
22GO:0010583: response to cyclopentenone2.38E-05
23GO:0006518: peptide metabolic process5.99E-05
24GO:0009734: auxin-activated signaling pathway6.10E-05
25GO:0009658: chloroplast organization6.61E-05
26GO:0042127: regulation of cell proliferation1.05E-04
27GO:0048229: gametophyte development2.00E-04
28GO:2000038: regulation of stomatal complex development2.13E-04
29GO:0009913: epidermal cell differentiation4.49E-04
30GO:0040008: regulation of growth4.82E-04
31GO:0009942: longitudinal axis specification5.95E-04
32GO:1901259: chloroplast rRNA processing5.95E-04
33GO:0034757: negative regulation of iron ion transport6.52E-04
34GO:0034970: histone H3-R2 methylation6.52E-04
35GO:0042659: regulation of cell fate specification6.52E-04
36GO:1905039: carboxylic acid transmembrane transport6.52E-04
37GO:1905200: gibberellic acid transmembrane transport6.52E-04
38GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.52E-04
39GO:0034972: histone H3-R26 methylation6.52E-04
40GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.52E-04
41GO:0080112: seed growth6.52E-04
42GO:0010063: positive regulation of trichoblast fate specification6.52E-04
43GO:0090558: plant epidermis development6.52E-04
44GO:0010480: microsporocyte differentiation6.52E-04
45GO:0090063: positive regulation of microtubule nucleation6.52E-04
46GO:0042759: long-chain fatty acid biosynthetic process6.52E-04
47GO:1903866: palisade mesophyll development6.52E-04
48GO:0034971: histone H3-R17 methylation6.52E-04
49GO:0035987: endodermal cell differentiation6.52E-04
50GO:0006436: tryptophanyl-tRNA aminoacylation6.52E-04
51GO:0006468: protein phosphorylation6.55E-04
52GO:0006955: immune response7.61E-04
53GO:0048437: floral organ development7.61E-04
54GO:0000082: G1/S transition of mitotic cell cycle7.61E-04
55GO:0009793: embryo development ending in seed dormancy8.68E-04
56GO:0007389: pattern specification process1.15E-03
57GO:0010305: leaf vascular tissue pattern formation1.28E-03
58GO:2000123: positive regulation of stomatal complex development1.40E-03
59GO:0000086: G2/M transition of mitotic cell cycle1.40E-03
60GO:1901529: positive regulation of anion channel activity1.40E-03
61GO:0010254: nectary development1.40E-03
62GO:0033566: gamma-tubulin complex localization1.40E-03
63GO:0048255: mRNA stabilization1.40E-03
64GO:0010271: regulation of chlorophyll catabolic process1.40E-03
65GO:1902326: positive regulation of chlorophyll biosynthetic process1.40E-03
66GO:0010569: regulation of double-strand break repair via homologous recombination1.40E-03
67GO:0010541: acropetal auxin transport1.40E-03
68GO:0018026: peptidyl-lysine monomethylation1.40E-03
69GO:0010434: bract formation1.40E-03
70GO:0009662: etioplast organization1.40E-03
71GO:1900033: negative regulation of trichome patterning1.40E-03
72GO:0048731: system development1.40E-03
73GO:1904143: positive regulation of carotenoid biosynthetic process1.40E-03
74GO:0080009: mRNA methylation1.40E-03
75GO:0048439: flower morphogenesis1.40E-03
76GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.40E-03
77GO:0009416: response to light stimulus1.50E-03
78GO:0009790: embryo development1.62E-03
79GO:1900865: chloroplast RNA modification1.63E-03
80GO:0006535: cysteine biosynthetic process from serine1.90E-03
81GO:0048829: root cap development1.90E-03
82GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.31E-03
83GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.31E-03
84GO:0090708: specification of plant organ axis polarity2.31E-03
85GO:0080117: secondary growth2.31E-03
86GO:0044210: 'de novo' CTP biosynthetic process2.31E-03
87GO:0090391: granum assembly2.31E-03
88GO:0042780: tRNA 3'-end processing2.31E-03
89GO:0001578: microtubule bundle formation2.31E-03
90GO:0009954: proximal/distal pattern formation2.31E-03
91GO:0045037: protein import into chloroplast stroma2.53E-03
92GO:0010582: floral meristem determinacy2.53E-03
93GO:0010588: cotyledon vascular tissue pattern formation2.88E-03
94GO:0009934: regulation of meristem structural organization3.25E-03
95GO:0010239: chloroplast mRNA processing3.36E-03
96GO:0010306: rhamnogalacturonan II biosynthetic process3.36E-03
97GO:0007276: gamete generation3.36E-03
98GO:0019048: modulation by virus of host morphology or physiology3.36E-03
99GO:0046739: transport of virus in multicellular host3.36E-03
100GO:0016572: histone phosphorylation3.36E-03
101GO:0031048: chromatin silencing by small RNA3.36E-03
102GO:0009558: embryo sac cellularization3.36E-03
103GO:0010371: regulation of gibberellin biosynthetic process3.36E-03
104GO:1902476: chloride transmembrane transport3.36E-03
105GO:0010071: root meristem specification3.36E-03
106GO:0051513: regulation of monopolar cell growth3.36E-03
107GO:0080188: RNA-directed DNA methylation3.65E-03
108GO:0048481: plant ovule development3.81E-03
109GO:0019344: cysteine biosynthetic process4.52E-03
110GO:1900864: mitochondrial RNA modification4.54E-03
111GO:0051322: anaphase4.54E-03
112GO:0030104: water homeostasis4.54E-03
113GO:0006221: pyrimidine nucleotide biosynthetic process4.54E-03
114GO:0051567: histone H3-K9 methylation4.54E-03
115GO:0009755: hormone-mediated signaling pathway4.54E-03
116GO:0006479: protein methylation4.54E-03
117GO:0048629: trichome patterning4.54E-03
118GO:0006865: amino acid transport4.87E-03
119GO:0006418: tRNA aminoacylation for protein translation4.99E-03
120GO:0003333: amino acid transmembrane transport5.49E-03
121GO:0016998: cell wall macromolecule catabolic process5.49E-03
122GO:0016123: xanthophyll biosynthetic process5.83E-03
123GO:0032876: negative regulation of DNA endoreduplication5.83E-03
124GO:0030308: negative regulation of cell growth5.83E-03
125GO:0010375: stomatal complex patterning5.83E-03
126GO:0016120: carotene biosynthetic process5.83E-03
127GO:0048497: maintenance of floral organ identity5.83E-03
128GO:0048366: leaf development6.30E-03
129GO:0006351: transcription, DNA-templated6.89E-03
130GO:0009959: negative gravitropism7.24E-03
131GO:0006655: phosphatidylglycerol biosynthetic process7.24E-03
132GO:0010389: regulation of G2/M transition of mitotic cell cycle7.24E-03
133GO:0060918: auxin transport7.24E-03
134GO:1902456: regulation of stomatal opening7.24E-03
135GO:0048831: regulation of shoot system development7.24E-03
136GO:0016554: cytidine to uridine editing7.24E-03
137GO:0003006: developmental process involved in reproduction7.24E-03
138GO:0010315: auxin efflux7.24E-03
139GO:0016458: gene silencing7.24E-03
140GO:0009643: photosynthetic acclimation7.24E-03
141GO:0010304: PSII associated light-harvesting complex II catabolic process7.24E-03
142GO:0008033: tRNA processing8.41E-03
143GO:0010087: phloem or xylem histogenesis8.41E-03
144GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity8.75E-03
145GO:0010310: regulation of hydrogen peroxide metabolic process8.75E-03
146GO:2000067: regulation of root morphogenesis8.75E-03
147GO:0009955: adaxial/abaxial pattern specification8.75E-03
148GO:0009082: branched-chain amino acid biosynthetic process8.75E-03
149GO:0010067: procambium histogenesis8.75E-03
150GO:0048509: regulation of meristem development8.75E-03
151GO:0009099: valine biosynthetic process8.75E-03
152GO:2000037: regulation of stomatal complex patterning8.75E-03
153GO:0048868: pollen tube development9.07E-03
154GO:0009741: response to brassinosteroid9.07E-03
155GO:0007018: microtubule-based movement9.76E-03
156GO:0006821: chloride transport1.04E-02
157GO:0010444: guard mother cell differentiation1.04E-02
158GO:0010103: stomatal complex morphogenesis1.04E-02
159GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.04E-02
160GO:0000712: resolution of meiotic recombination intermediates1.04E-02
161GO:0006401: RNA catabolic process1.04E-02
162GO:0048825: cotyledon development1.05E-02
163GO:0009736: cytokinin-activated signaling pathway1.05E-02
164GO:0009733: response to auxin1.05E-02
165GO:0080156: mitochondrial mRNA modification1.12E-02
166GO:0009909: regulation of flower development1.19E-02
167GO:0032502: developmental process1.20E-02
168GO:0006402: mRNA catabolic process1.21E-02
169GO:0001522: pseudouridine synthesis1.21E-02
170GO:0009642: response to light intensity1.21E-02
171GO:0030162: regulation of proteolysis1.21E-02
172GO:0042255: ribosome assembly1.21E-02
173GO:0046620: regulation of organ growth1.21E-02
174GO:0006353: DNA-templated transcription, termination1.21E-02
175GO:0048766: root hair initiation1.21E-02
176GO:0010492: maintenance of shoot apical meristem identity1.21E-02
177GO:0055075: potassium ion homeostasis1.21E-02
178GO:0052543: callose deposition in cell wall1.21E-02
179GO:0016042: lipid catabolic process1.29E-02
180GO:0048316: seed development1.35E-02
181GO:0010252: auxin homeostasis1.37E-02
182GO:0019430: removal of superoxide radicals1.39E-02
183GO:0009097: isoleucine biosynthetic process1.39E-02
184GO:0001510: RNA methylation1.39E-02
185GO:0010497: plasmodesmata-mediated intercellular transport1.39E-02
186GO:0009657: plastid organization1.39E-02
187GO:0032544: plastid translation1.39E-02
188GO:0048574: long-day photoperiodism, flowering1.39E-02
189GO:0000910: cytokinesis1.54E-02
190GO:0006355: regulation of transcription, DNA-templated1.57E-02
191GO:0048507: meristem development1.58E-02
192GO:0000373: Group II intron splicing1.58E-02
193GO:0048589: developmental growth1.58E-02
194GO:0000902: cell morphogenesis1.58E-02
195GO:0009553: embryo sac development1.59E-02
196GO:0010027: thylakoid membrane organization1.63E-02
197GO:0006396: RNA processing1.71E-02
198GO:0042761: very long-chain fatty acid biosynthetic process1.78E-02
199GO:2000280: regulation of root development1.78E-02
200GO:0006349: regulation of gene expression by genetic imprinting1.78E-02
201GO:0031425: chloroplast RNA processing1.78E-02
202GO:0006259: DNA metabolic process1.99E-02
203GO:0010048: vernalization response1.99E-02
204GO:0030422: production of siRNA involved in RNA interference1.99E-02
205GO:0045036: protein targeting to chloroplast1.99E-02
206GO:0046856: phosphatidylinositol dephosphorylation2.21E-02
207GO:0006265: DNA topological change2.21E-02
208GO:1903507: negative regulation of nucleic acid-templated transcription2.21E-02
209GO:0008285: negative regulation of cell proliferation2.21E-02
210GO:0009750: response to fructose2.21E-02
211GO:0015770: sucrose transport2.21E-02
212GO:0000160: phosphorelay signal transduction system2.25E-02
213GO:0016567: protein ubiquitination2.27E-02
214GO:0006508: proteolysis2.32E-02
215GO:0008361: regulation of cell size2.43E-02
216GO:0006312: mitotic recombination2.43E-02
217GO:0012501: programmed cell death2.43E-02
218GO:0010152: pollen maturation2.43E-02
219GO:0016024: CDP-diacylglycerol biosynthetic process2.43E-02
220GO:0010102: lateral root morphogenesis2.66E-02
221GO:0009691: cytokinin biosynthetic process2.66E-02
222GO:0010075: regulation of meristem growth2.66E-02
223GO:0048768: root hair cell tip growth2.90E-02
224GO:0048467: gynoecium development2.90E-02
225GO:0010207: photosystem II assembly2.90E-02
226GO:0010020: chloroplast fission2.90E-02
227GO:0010223: secondary shoot formation2.90E-02
228GO:0009887: animal organ morphogenesis2.90E-02
229GO:0010540: basipetal auxin transport2.90E-02
230GO:0009901: anther dehiscence3.15E-02
231GO:0010025: wax biosynthetic process3.40E-02
232GO:0006833: water transport3.40E-02
233GO:0009926: auxin polar transport3.50E-02
234GO:0009744: response to sucrose3.50E-02
235GO:0009555: pollen development3.59E-02
236GO:0009944: polarity specification of adaxial/abaxial axis3.66E-02
237GO:0080147: root hair cell development3.66E-02
238GO:2000377: regulation of reactive oxygen species metabolic process3.66E-02
239GO:0007166: cell surface receptor signaling pathway3.87E-02
240GO:0051302: regulation of cell division3.93E-02
241GO:0010073: meristem maintenance3.93E-02
242GO:0051301: cell division4.13E-02
243GO:0010431: seed maturation4.20E-02
244GO:0006306: DNA methylation4.20E-02
245GO:0015992: proton transport4.20E-02
246GO:0048364: root development4.37E-02
247GO:2000022: regulation of jasmonic acid mediated signaling pathway4.48E-02
248GO:0006364: rRNA processing4.70E-02
249GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.77E-02
250GO:0010082: regulation of root meristem growth4.77E-02
251GO:0071215: cellular response to abscisic acid stimulus4.77E-02
252GO:0001944: vasculature development4.77E-02
253GO:0010227: floral organ abscission4.77E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
5GO:0004519: endonuclease activity4.70E-07
6GO:0003723: RNA binding5.71E-06
7GO:0008173: RNA methyltransferase activity7.32E-05
8GO:0004222: metalloendopeptidase activity1.11E-04
9GO:0004674: protein serine/threonine kinase activity4.69E-04
10GO:0004124: cysteine synthase activity5.95E-04
11GO:1905201: gibberellin transmembrane transporter activity6.52E-04
12GO:0016274: protein-arginine N-methyltransferase activity6.52E-04
13GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.52E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.52E-04
15GO:0004830: tryptophan-tRNA ligase activity6.52E-04
16GO:0052381: tRNA dimethylallyltransferase activity6.52E-04
17GO:0004160: dihydroxy-acid dehydratase activity6.52E-04
18GO:0004654: polyribonucleotide nucleotidyltransferase activity6.52E-04
19GO:0004016: adenylate cyclase activity6.52E-04
20GO:0005524: ATP binding9.39E-04
21GO:0008168: methyltransferase activity1.18E-03
22GO:0019843: rRNA binding1.23E-03
23GO:0004672: protein kinase activity1.29E-03
24GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.40E-03
25GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.40E-03
26GO:0009884: cytokinin receptor activity1.40E-03
27GO:0035241: protein-arginine omega-N monomethyltransferase activity1.40E-03
28GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.40E-03
29GO:0019901: protein kinase binding1.54E-03
30GO:0009672: auxin:proton symporter activity1.63E-03
31GO:0017150: tRNA dihydrouridine synthase activity2.31E-03
32GO:0042781: 3'-tRNA processing endoribonuclease activity2.31E-03
33GO:0016805: dipeptidase activity2.31E-03
34GO:0005034: osmosensor activity2.31E-03
35GO:0008469: histone-arginine N-methyltransferase activity2.31E-03
36GO:0008237: metallopeptidase activity2.33E-03
37GO:0009982: pseudouridine synthase activity2.88E-03
38GO:0010329: auxin efflux transmembrane transporter activity2.88E-03
39GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.25E-03
40GO:0008508: bile acid:sodium symporter activity3.36E-03
41GO:0001872: (1->3)-beta-D-glucan binding3.36E-03
42GO:0009678: hydrogen-translocating pyrophosphatase activity3.36E-03
43GO:0003883: CTP synthase activity3.36E-03
44GO:0009041: uridylate kinase activity3.36E-03
45GO:0035197: siRNA binding3.36E-03
46GO:0003916: DNA topoisomerase activity3.36E-03
47GO:0010011: auxin binding4.54E-03
48GO:0016836: hydro-lyase activity4.54E-03
49GO:0010328: auxin influx transmembrane transporter activity4.54E-03
50GO:0005253: anion channel activity4.54E-03
51GO:0004930: G-protein coupled receptor activity4.54E-03
52GO:0016279: protein-lysine N-methyltransferase activity4.54E-03
53GO:0016788: hydrolase activity, acting on ester bonds4.88E-03
54GO:0004176: ATP-dependent peptidase activity5.49E-03
55GO:0004888: transmembrane signaling receptor activity5.83E-03
56GO:0005275: amine transmembrane transporter activity5.83E-03
57GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.83E-03
58GO:0005515: protein binding6.01E-03
59GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding6.48E-03
60GO:0030570: pectate lyase activity6.58E-03
61GO:0003727: single-stranded RNA binding7.16E-03
62GO:0004605: phosphatidate cytidylyltransferase activity7.24E-03
63GO:0030332: cyclin binding7.24E-03
64GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity7.24E-03
65GO:0004784: superoxide dismutase activity7.24E-03
66GO:0005247: voltage-gated chloride channel activity7.24E-03
67GO:0004812: aminoacyl-tRNA ligase activity7.77E-03
68GO:0052689: carboxylic ester hydrolase activity8.22E-03
69GO:0016832: aldehyde-lyase activity8.75E-03
70GO:0019900: kinase binding8.75E-03
71GO:0001085: RNA polymerase II transcription factor binding9.07E-03
72GO:0005215: transporter activity1.01E-02
73GO:0042803: protein homodimerization activity1.02E-02
74GO:0004427: inorganic diphosphatase activity1.04E-02
75GO:0030515: snoRNA binding1.04E-02
76GO:0003777: microtubule motor activity1.19E-02
77GO:0015171: amino acid transmembrane transporter activity1.19E-02
78GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.39E-02
79GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity1.39E-02
80GO:0003700: transcription factor activity, sequence-specific DNA binding1.54E-02
81GO:0004673: protein histidine kinase activity1.99E-02
82GO:0003677: DNA binding2.09E-02
83GO:0008515: sucrose transmembrane transporter activity2.21E-02
84GO:0008559: xenobiotic-transporting ATPase activity2.21E-02
85GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.22E-02
86GO:0004693: cyclin-dependent protein serine/threonine kinase activity2.36E-02
87GO:0004521: endoribonuclease activity2.43E-02
88GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.43E-02
89GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.47E-02
90GO:0003725: double-stranded RNA binding2.66E-02
91GO:0000175: 3'-5'-exoribonuclease activity2.66E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity2.66E-02
93GO:0031072: heat shock protein binding2.66E-02
94GO:0000155: phosphorelay sensor kinase activity2.66E-02
95GO:0016887: ATPase activity2.87E-02
96GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.00E-02
97GO:0051539: 4 iron, 4 sulfur cluster binding3.09E-02
98GO:0051119: sugar transmembrane transporter activity3.15E-02
99GO:0004190: aspartic-type endopeptidase activity3.15E-02
100GO:0004871: signal transducer activity3.25E-02
101GO:0008017: microtubule binding3.47E-02
102GO:0003714: transcription corepressor activity3.66E-02
103GO:0043424: protein histidine kinase binding3.93E-02
104GO:0015079: potassium ion transmembrane transporter activity3.93E-02
105GO:0015293: symporter activity3.93E-02
106GO:0046872: metal ion binding4.04E-02
107GO:0008094: DNA-dependent ATPase activity4.20E-02
108GO:0033612: receptor serine/threonine kinase binding4.20E-02
109GO:0008408: 3'-5' exonuclease activity4.20E-02
110GO:0043565: sequence-specific DNA binding4.28E-02
111GO:0003690: double-stranded DNA binding4.86E-02
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Gene type



Gene DE type