Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G64355

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090042: tubulin deacetylation0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:0006114: glycerol biosynthetic process0.00E+00
4GO:0018023: peptidyl-lysine trimethylation0.00E+00
5GO:1902458: positive regulation of stomatal opening0.00E+00
6GO:0006429: leucyl-tRNA aminoacylation0.00E+00
7GO:0009249: protein lipoylation0.00E+00
8GO:0019685: photosynthesis, dark reaction0.00E+00
9GO:0002184: cytoplasmic translational termination0.00E+00
10GO:0017038: protein import0.00E+00
11GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
12GO:0046460: neutral lipid biosynthetic process0.00E+00
13GO:0090470: shoot organ boundary specification0.00E+00
14GO:0090279: regulation of calcium ion import0.00E+00
15GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
16GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
17GO:0031116: positive regulation of microtubule polymerization0.00E+00
18GO:0042821: pyridoxal biosynthetic process0.00E+00
19GO:0042407: cristae formation0.00E+00
20GO:0042820: vitamin B6 catabolic process0.00E+00
21GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
22GO:0009106: lipoate metabolic process0.00E+00
23GO:0071482: cellular response to light stimulus9.23E-07
24GO:0045038: protein import into chloroplast thylakoid membrane4.19E-06
25GO:0010207: photosystem II assembly1.10E-05
26GO:1903426: regulation of reactive oxygen species biosynthetic process1.20E-05
27GO:2001141: regulation of RNA biosynthetic process8.63E-05
28GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly8.63E-05
29GO:0006352: DNA-templated transcription, initiation1.25E-04
30GO:0009658: chloroplast organization1.41E-04
31GO:0032543: mitochondrial translation2.28E-04
32GO:0010027: thylakoid membrane organization2.51E-04
33GO:0010190: cytochrome b6f complex assembly3.22E-04
34GO:0015995: chlorophyll biosynthetic process3.29E-04
35GO:0030488: tRNA methylation4.29E-04
36GO:0042547: cell wall modification involved in multidimensional cell growth5.23E-04
37GO:0015801: aromatic amino acid transport5.23E-04
38GO:0019478: D-amino acid catabolic process5.23E-04
39GO:0048363: mucilage pectin metabolic process5.23E-04
40GO:0000476: maturation of 4.5S rRNA5.23E-04
41GO:0009443: pyridoxal 5'-phosphate salvage5.23E-04
42GO:0000967: rRNA 5'-end processing5.23E-04
43GO:0005980: glycogen catabolic process5.23E-04
44GO:0015671: oxygen transport5.23E-04
45GO:0009395: phospholipid catabolic process5.50E-04
46GO:2000070: regulation of response to water deprivation6.85E-04
47GO:0048564: photosystem I assembly6.85E-04
48GO:0006605: protein targeting6.85E-04
49GO:0032544: plastid translation8.35E-04
50GO:0019432: triglyceride biosynthetic process9.97E-04
51GO:0034755: iron ion transmembrane transport1.13E-03
52GO:0071668: plant-type cell wall assembly1.13E-03
53GO:0006423: cysteinyl-tRNA aminoacylation1.13E-03
54GO:0006435: threonyl-tRNA aminoacylation1.13E-03
55GO:0080183: response to photooxidative stress1.13E-03
56GO:0001682: tRNA 5'-leader removal1.13E-03
57GO:0051262: protein tetramerization1.13E-03
58GO:0034470: ncRNA processing1.13E-03
59GO:0010275: NAD(P)H dehydrogenase complex assembly1.13E-03
60GO:0010198: synergid death1.13E-03
61GO:1900871: chloroplast mRNA modification1.13E-03
62GO:0006432: phenylalanyl-tRNA aminoacylation1.13E-03
63GO:0018026: peptidyl-lysine monomethylation1.13E-03
64GO:0000256: allantoin catabolic process1.13E-03
65GO:0006782: protoporphyrinogen IX biosynthetic process1.37E-03
66GO:0006415: translational termination1.58E-03
67GO:0009089: lysine biosynthetic process via diaminopimelate1.58E-03
68GO:0005983: starch catabolic process1.81E-03
69GO:0015940: pantothenate biosynthetic process1.84E-03
70GO:0001578: microtubule bundle formation1.84E-03
71GO:0045493: xylan catabolic process1.84E-03
72GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.84E-03
73GO:0005977: glycogen metabolic process1.84E-03
74GO:0033591: response to L-ascorbic acid1.84E-03
75GO:0010136: ureide catabolic process1.84E-03
76GO:0009627: systemic acquired resistance2.03E-03
77GO:0009817: defense response to fungus, incompatible interaction2.48E-03
78GO:0090351: seedling development2.61E-03
79GO:0043572: plastid fission2.67E-03
80GO:0010371: regulation of gibberellin biosynthetic process2.67E-03
81GO:0009102: biotin biosynthetic process2.67E-03
82GO:0046653: tetrahydrofolate metabolic process2.67E-03
83GO:0010239: chloroplast mRNA processing2.67E-03
84GO:0006424: glutamyl-tRNA aminoacylation2.67E-03
85GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.67E-03
86GO:0006145: purine nucleobase catabolic process2.67E-03
87GO:0006418: tRNA aminoacylation for protein translation3.57E-03
88GO:0071483: cellular response to blue light3.60E-03
89GO:0010021: amylopectin biosynthetic process3.60E-03
90GO:0010109: regulation of photosynthesis3.60E-03
91GO:0051322: anaphase3.60E-03
92GO:0009765: photosynthesis, light harvesting3.60E-03
93GO:0022622: root system development3.60E-03
94GO:0007020: microtubule nucleation3.60E-03
95GO:0048511: rhythmic process3.93E-03
96GO:0016120: carotene biosynthetic process4.62E-03
97GO:0009107: lipoate biosynthetic process4.62E-03
98GO:0016123: xanthophyll biosynthetic process4.62E-03
99GO:0000304: response to singlet oxygen4.62E-03
100GO:0080110: sporopollenin biosynthetic process4.62E-03
101GO:0046785: microtubule polymerization4.62E-03
102GO:0046907: intracellular transport4.62E-03
103GO:0009306: protein secretion5.11E-03
104GO:0016117: carotenoid biosynthetic process5.54E-03
105GO:0042549: photosystem II stabilization5.73E-03
106GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.73E-03
107GO:0006655: phosphatidylglycerol biosynthetic process5.73E-03
108GO:0016554: cytidine to uridine editing5.73E-03
109GO:0032973: amino acid export5.73E-03
110GO:1901259: chloroplast rRNA processing6.91E-03
111GO:0009648: photoperiodism6.91E-03
112GO:0034389: lipid particle organization6.91E-03
113GO:0032880: regulation of protein localization8.18E-03
114GO:0048528: post-embryonic root development8.18E-03
115GO:0043090: amino acid import8.18E-03
116GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.18E-03
117GO:0006353: DNA-templated transcription, termination9.53E-03
118GO:0000105: histidine biosynthetic process9.53E-03
119GO:0052543: callose deposition in cell wall9.53E-03
120GO:0017004: cytochrome complex assembly1.10E-02
121GO:0022900: electron transport chain1.10E-02
122GO:0015996: chlorophyll catabolic process1.10E-02
123GO:0007186: G-protein coupled receptor signaling pathway1.10E-02
124GO:0009657: plastid organization1.10E-02
125GO:0006783: heme biosynthetic process1.24E-02
126GO:0009821: alkaloid biosynthetic process1.24E-02
127GO:0010206: photosystem II repair1.24E-02
128GO:0080144: amino acid homeostasis1.24E-02
129GO:0005982: starch metabolic process1.40E-02
130GO:0043067: regulation of programmed cell death1.40E-02
131GO:0006779: porphyrin-containing compound biosynthetic process1.40E-02
132GO:1900865: chloroplast RNA modification1.40E-02
133GO:0048354: mucilage biosynthetic process involved in seed coat development1.40E-02
134GO:0016311: dephosphorylation1.45E-02
135GO:0006949: syncytium formation1.56E-02
136GO:0015031: protein transport1.65E-02
137GO:0015979: photosynthesis1.71E-02
138GO:0009684: indoleacetic acid biosynthetic process1.73E-02
139GO:0019684: photosynthesis, light reaction1.73E-02
140GO:0009773: photosynthetic electron transport in photosystem I1.73E-02
141GO:0008285: negative regulation of cell proliferation1.73E-02
142GO:0006879: cellular iron ion homeostasis1.73E-02
143GO:0009735: response to cytokinin1.75E-02
144GO:0007568: aging1.76E-02
145GO:0045037: protein import into chloroplast stroma1.91E-02
146GO:0016024: CDP-diacylglycerol biosynthetic process1.91E-02
147GO:0045087: innate immune response1.93E-02
148GO:0006413: translational initiation1.97E-02
149GO:0009725: response to hormone2.09E-02
150GO:2000012: regulation of auxin polar transport2.09E-02
151GO:0006508: proteolysis2.16E-02
152GO:0009266: response to temperature stimulus2.28E-02
153GO:0010020: chloroplast fission2.28E-02
154GO:0006631: fatty acid metabolic process2.30E-02
155GO:0016042: lipid catabolic process2.41E-02
156GO:0071732: cellular response to nitric oxide2.47E-02
157GO:0006071: glycerol metabolic process2.67E-02
158GO:0000162: tryptophan biosynthetic process2.67E-02
159GO:0007010: cytoskeleton organization2.88E-02
160GO:0007017: microtubule-based process3.09E-02
161GO:0010073: meristem maintenance3.09E-02
162GO:0016575: histone deacetylation3.09E-02
163GO:0043622: cortical microtubule organization3.09E-02
164GO:0009664: plant-type cell wall organization3.13E-02
165GO:0003333: amino acid transmembrane transport3.30E-02
166GO:0016998: cell wall macromolecule catabolic process3.30E-02
167GO:0061077: chaperone-mediated protein folding3.30E-02
168GO:0031408: oxylipin biosynthetic process3.30E-02
169GO:0035428: hexose transmembrane transport3.52E-02
170GO:0006730: one-carbon metabolic process3.52E-02
171GO:0031348: negative regulation of defense response3.52E-02
172GO:0080092: regulation of pollen tube growth3.52E-02
173GO:0019748: secondary metabolic process3.52E-02
174GO:0009814: defense response, incompatible interaction3.52E-02
175GO:0071369: cellular response to ethylene stimulus3.75E-02
176GO:0010227: floral organ abscission3.75E-02
177GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.75E-02
178GO:0055114: oxidation-reduction process3.83E-02
179GO:0010584: pollen exine formation3.97E-02
180GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.21E-02
181GO:0051028: mRNA transport4.21E-02
182GO:0008284: positive regulation of cell proliferation4.21E-02
183GO:0000271: polysaccharide biosynthetic process4.45E-02
184GO:0042335: cuticle development4.45E-02
185GO:0008033: tRNA processing4.45E-02
186GO:0000413: protein peptidyl-prolyl isomerization4.45E-02
187GO:0010197: polar nucleus fusion4.69E-02
188GO:0010182: sugar mediated signaling pathway4.69E-02
189GO:0046323: glucose import4.69E-02
190GO:0009958: positive gravitropism4.69E-02
191GO:0045489: pectin biosynthetic process4.69E-02
192GO:0006396: RNA processing4.91E-02
193GO:0042752: regulation of circadian rhythm4.94E-02
194GO:0009646: response to absence of light4.94E-02
RankGO TermAdjusted P value
1GO:0004823: leucine-tRNA ligase activity0.00E+00
2GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0015267: channel activity0.00E+00
5GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
6GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
7GO:0005048: signal sequence binding0.00E+00
8GO:0004076: biotin synthase activity0.00E+00
9GO:0043136: glycerol-3-phosphatase activity0.00E+00
10GO:0000121: glycerol-1-phosphatase activity0.00E+00
11GO:0019144: ADP-sugar diphosphatase activity0.00E+00
12GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
13GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
14GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
15GO:0043864: indoleacetamide hydrolase activity0.00E+00
16GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
17GO:0008115: sarcosine oxidase activity0.00E+00
18GO:0050613: delta14-sterol reductase activity0.00E+00
19GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
20GO:0051721: protein phosphatase 2A binding0.00E+00
21GO:0043014: alpha-tubulin binding0.00E+00
22GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
23GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
24GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
25GO:0042903: tubulin deacetylase activity0.00E+00
26GO:0045435: lycopene epsilon cyclase activity0.00E+00
27GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.40E-06
28GO:0001053: plastid sigma factor activity1.89E-06
29GO:0016987: sigma factor activity1.89E-06
30GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.20E-05
31GO:0005528: FK506 binding2.25E-05
32GO:0016788: hydrolase activity, acting on ester bonds2.39E-05
33GO:0070402: NADPH binding4.04E-05
34GO:0002161: aminoacyl-tRNA editing activity4.04E-05
35GO:0016851: magnesium chelatase activity8.63E-05
36GO:0016149: translation release factor activity, codon specific8.63E-05
37GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.49E-04
38GO:0004040: amidase activity2.28E-04
39GO:2001070: starch binding3.22E-04
40GO:0004222: metalloendopeptidase activity4.55E-04
41GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.23E-04
42GO:0004853: uroporphyrinogen decarboxylase activity5.23E-04
43GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.23E-04
44GO:0005344: oxygen transporter activity5.23E-04
45GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.23E-04
46GO:0005227: calcium activated cation channel activity5.23E-04
47GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.23E-04
48GO:0008184: glycogen phosphorylase activity5.23E-04
49GO:0004856: xylulokinase activity5.23E-04
50GO:0009496: plastoquinol--plastocyanin reductase activity5.23E-04
51GO:0080042: ADP-glucose pyrophosphohydrolase activity5.23E-04
52GO:0004645: phosphorylase activity5.23E-04
53GO:0050308: sugar-phosphatase activity5.23E-04
54GO:0019203: carbohydrate phosphatase activity5.23E-04
55GO:0005080: protein kinase C binding5.23E-04
56GO:0003993: acid phosphatase activity6.05E-04
57GO:0003747: translation release factor activity9.97E-04
58GO:0048038: quinone binding1.10E-03
59GO:0017118: lipoyltransferase activity1.13E-03
60GO:0080041: ADP-ribose pyrophosphohydrolase activity1.13E-03
61GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.13E-03
62GO:0009977: proton motive force dependent protein transmembrane transporter activity1.13E-03
63GO:0016415: octanoyltransferase activity1.13E-03
64GO:0015173: aromatic amino acid transmembrane transporter activity1.13E-03
65GO:0004817: cysteine-tRNA ligase activity1.13E-03
66GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.13E-03
67GO:0004829: threonine-tRNA ligase activity1.13E-03
68GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.13E-03
69GO:0019156: isoamylase activity1.13E-03
70GO:0004826: phenylalanine-tRNA ligase activity1.13E-03
71GO:0000049: tRNA binding1.81E-03
72GO:0030267: glyoxylate reductase (NADP) activity1.84E-03
73GO:0015462: ATPase-coupled protein transmembrane transporter activity1.84E-03
74GO:0004180: carboxypeptidase activity1.84E-03
75GO:0005504: fatty acid binding1.84E-03
76GO:0003913: DNA photolyase activity1.84E-03
77GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.84E-03
78GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.67E-03
79GO:0043023: ribosomal large subunit binding2.67E-03
80GO:0001872: (1->3)-beta-D-glucan binding2.67E-03
81GO:0048487: beta-tubulin binding2.67E-03
82GO:0004792: thiosulfate sulfurtransferase activity2.67E-03
83GO:0046556: alpha-L-arabinofuranosidase activity3.60E-03
84GO:0016279: protein-lysine N-methyltransferase activity3.60E-03
85GO:0004045: aminoacyl-tRNA hydrolase activity3.60E-03
86GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.60E-03
87GO:0045430: chalcone isomerase activity3.60E-03
88GO:0009044: xylan 1,4-beta-xylosidase activity3.60E-03
89GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.60E-03
90GO:0008374: O-acyltransferase activity4.62E-03
91GO:0005275: amine transmembrane transporter activity4.62E-03
92GO:0016773: phosphotransferase activity, alcohol group as acceptor4.62E-03
93GO:0030570: pectate lyase activity4.70E-03
94GO:0004812: aminoacyl-tRNA ligase activity5.54E-03
95GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.73E-03
96GO:0042578: phosphoric ester hydrolase activity5.73E-03
97GO:0004526: ribonuclease P activity5.73E-03
98GO:0004556: alpha-amylase activity5.73E-03
99GO:0003899: DNA-directed 5'-3' RNA polymerase activity6.82E-03
100GO:0005261: cation channel activity6.91E-03
101GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.91E-03
102GO:0051920: peroxiredoxin activity6.91E-03
103GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.91E-03
104GO:0004144: diacylglycerol O-acyltransferase activity6.91E-03
105GO:0009881: photoreceptor activity8.18E-03
106GO:0016787: hydrolase activity8.92E-03
107GO:0004033: aldo-keto reductase (NADP) activity9.53E-03
108GO:0005337: nucleoside transmembrane transporter activity9.53E-03
109GO:0016209: antioxidant activity9.53E-03
110GO:0008312: 7S RNA binding9.53E-03
111GO:0008237: metallopeptidase activity1.03E-02
112GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.10E-02
113GO:0008173: RNA methyltransferase activity1.10E-02
114GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.24E-02
115GO:0016844: strictosidine synthase activity1.40E-02
116GO:0005381: iron ion transmembrane transporter activity1.40E-02
117GO:0019843: rRNA binding1.43E-02
118GO:0008236: serine-type peptidase activity1.45E-02
119GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.48E-02
120GO:0052689: carboxylic ester hydrolase activity1.63E-02
121GO:0047372: acylglycerol lipase activity1.73E-02
122GO:0005089: Rho guanyl-nucleotide exchange factor activity1.73E-02
123GO:0016491: oxidoreductase activity1.78E-02
124GO:0031072: heat shock protein binding2.09E-02
125GO:0008266: poly(U) RNA binding2.28E-02
126GO:0008083: growth factor activity2.28E-02
127GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.28E-02
128GO:0003743: translation initiation factor activity2.61E-02
129GO:0051537: 2 iron, 2 sulfur cluster binding2.70E-02
130GO:0043621: protein self-association2.70E-02
131GO:0051536: iron-sulfur cluster binding2.88E-02
132GO:0004857: enzyme inhibitor activity2.88E-02
133GO:0004407: histone deacetylase activity2.88E-02
134GO:0004176: ATP-dependent peptidase activity3.30E-02
135GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.52E-02
136GO:0022891: substrate-specific transmembrane transporter activity3.75E-02
137GO:0003756: protein disulfide isomerase activity3.97E-02
138GO:0005525: GTP binding4.66E-02
139GO:0008080: N-acetyltransferase activity4.69E-02
140GO:0016887: ATPase activity4.75E-02
141GO:0005355: glucose transmembrane transporter activity4.94E-02
142GO:0050662: coenzyme binding4.94E-02
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Gene type



Gene DE type