co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G62750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
5	GO:0071474: cellular hyperosmotic response	0.00E+00
6	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
7	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
8	GO:0034337: RNA folding	0.00E+00
9	GO:0006982: response to lipid hydroperoxide	0.00E+00
10	GO:0002184: cytoplasmic translational termination	0.00E+00
11	GO:0010335: response to non-ionic osmotic stress	0.00E+00
12	GO:0015995: chlorophyll biosynthetic process	1.07E-13
13	GO:0015979: photosynthesis	6.19E-08
14	GO:0055114: oxidation-reduction process	2.60E-06
15	GO:0010207: photosystem II assembly	2.76E-06
16	GO:0071482: cellular response to light stimulus	1.54E-05
17	GO:0019252: starch biosynthetic process	3.46E-05
18	GO:2001141: regulation of RNA biosynthetic process	4.07E-05
19	GO:0010021: amylopectin biosynthetic process	7.23E-05
20	GO:0009658: chloroplast organization	1.62E-04
21	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.63E-04
22	GO:0009854: oxidative photosynthetic carbon pathway	2.22E-04
23	GO:0015969: guanosine tetraphosphate metabolic process	3.40E-04
24	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	3.40E-04
25	GO:0031426: polycistronic mRNA processing	3.40E-04
26	GO:0043489: RNA stabilization	3.40E-04
27	GO:1904966: positive regulation of vitamin E biosynthetic process	3.40E-04
28	GO:0043953: protein transport by the Tat complex	3.40E-04
29	GO:0000481: maturation of 5S rRNA	3.40E-04
30	GO:0010426: DNA methylation on cytosine within a CHH sequence	3.40E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	3.40E-04
32	GO:0065002: intracellular protein transmembrane transport	3.40E-04
33	GO:0043686: co-translational protein modification	3.40E-04
34	GO:0043087: regulation of GTPase activity	3.40E-04
35	GO:0071461: cellular response to redox state	3.40E-04
36	GO:0051775: response to redox state	3.40E-04
37	GO:1902458: positive regulation of stomatal opening	3.40E-04
38	GO:0048363: mucilage pectin metabolic process	3.40E-04
39	GO:0016559: peroxisome fission	3.64E-04
40	GO:0048564: photosystem I assembly	3.64E-04
41	GO:0009735: response to cytokinin	4.14E-04
42	GO:0006783: heme biosynthetic process	5.35E-04
43	GO:0080005: photosystem stoichiometry adjustment	7.40E-04
44	GO:0042819: vitamin B6 biosynthetic process	7.40E-04
45	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.40E-04
46	GO:0071668: plant-type cell wall assembly	7.40E-04
47	GO:0006435: threonyl-tRNA aminoacylation	7.40E-04
48	GO:0080183: response to photooxidative stress	7.40E-04
49	GO:0006729: tetrahydrobiopterin biosynthetic process	7.40E-04
50	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.40E-04
51	GO:0030388: fructose 1,6-bisphosphate metabolic process	7.40E-04
52	GO:0051262: protein tetramerization	7.40E-04
53	GO:0010027: thylakoid membrane organization	7.86E-04
54	GO:0009089: lysine biosynthetic process via diaminopimelate	8.49E-04
55	GO:0009773: photosynthetic electron transport in photosystem I	8.49E-04
56	GO:0006352: DNA-templated transcription, initiation	8.49E-04
57	GO:0018119: peptidyl-cysteine S-nitrosylation	8.49E-04
58	GO:0016024: CDP-diacylglycerol biosynthetic process	9.69E-04
59	GO:0018298: protein-chromophore linkage	1.09E-03
60	GO:0009725: response to hormone	1.10E-03
61	GO:0006094: gluconeogenesis	1.10E-03
62	GO:0006000: fructose metabolic process	1.20E-03
63	GO:0034051: negative regulation of plant-type hypersensitive response	1.20E-03
64	GO:0044375: regulation of peroxisome size	1.20E-03
65	GO:0005977: glycogen metabolic process	1.20E-03
66	GO:0000913: preprophase band assembly	1.20E-03
67	GO:0031022: nuclear migration along microfilament	1.20E-03
68	GO:0019253: reductive pentose-phosphate cycle	1.23E-03
69	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.72E-03
70	GO:0033014: tetrapyrrole biosynthetic process	1.72E-03
71	GO:0008615: pyridoxine biosynthetic process	1.72E-03
72	GO:0042823: pyridoxal phosphate biosynthetic process	1.72E-03
73	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.72E-03
74	GO:0010371: regulation of gibberellin biosynthetic process	1.72E-03
75	GO:0006020: inositol metabolic process	1.72E-03
76	GO:0009152: purine ribonucleotide biosynthetic process	1.72E-03
77	GO:0046653: tetrahydrofolate metabolic process	1.72E-03
78	GO:0006107: oxaloacetate metabolic process	1.72E-03
79	GO:0010239: chloroplast mRNA processing	1.72E-03
80	GO:0009768: photosynthesis, light harvesting in photosystem I	1.88E-03
81	GO:0009744: response to sucrose	2.03E-03
82	GO:0015994: chlorophyll metabolic process	2.31E-03
83	GO:0010600: regulation of auxin biosynthetic process	2.31E-03
84	GO:0006021: inositol biosynthetic process	2.31E-03
85	GO:0006734: NADH metabolic process	2.31E-03
86	GO:2000306: positive regulation of photomorphogenesis	2.31E-03
87	GO:0006564: L-serine biosynthetic process	2.96E-03
88	GO:0009904: chloroplast accumulation movement	2.96E-03
89	GO:0045038: protein import into chloroplast thylakoid membrane	2.96E-03
90	GO:0031365: N-terminal protein amino acid modification	2.96E-03
91	GO:0009107: lipoate biosynthetic process	2.96E-03
92	GO:0000304: response to singlet oxygen	2.96E-03
93	GO:0045489: pectin biosynthetic process	3.38E-03
94	GO:0010190: cytochrome b6f complex assembly	3.65E-03
95	GO:0045962: positive regulation of development, heterochronic	3.65E-03
96	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.65E-03
97	GO:0050665: hydrogen peroxide biosynthetic process	3.65E-03
98	GO:0009228: thiamine biosynthetic process	3.65E-03
99	GO:0046855: inositol phosphate dephosphorylation	3.65E-03
100	GO:0042549: photosystem II stabilization	3.65E-03
101	GO:0006655: phosphatidylglycerol biosynthetic process	3.65E-03
102	GO:0006096: glycolytic process	3.68E-03
103	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.40E-03
104	GO:0009903: chloroplast avoidance movement	4.40E-03
105	GO:1901259: chloroplast rRNA processing	4.40E-03
106	GO:0009645: response to low light intensity stimulus	5.19E-03
107	GO:0010161: red light signaling pathway	5.19E-03
108	GO:0044550: secondary metabolite biosynthetic process	5.91E-03
109	GO:0005975: carbohydrate metabolic process	5.94E-03
110	GO:0010928: regulation of auxin mediated signaling pathway	6.03E-03
111	GO:0009704: de-etiolation	6.03E-03
112	GO:0032508: DNA duplex unwinding	6.03E-03
113	GO:0042255: ribosome assembly	6.03E-03
114	GO:2000070: regulation of response to water deprivation	6.03E-03
115	GO:0006353: DNA-templated transcription, termination	6.03E-03
116	GO:0007155: cell adhesion	6.03E-03
117	GO:0007186: G-protein coupled receptor signaling pathway	6.92E-03
118	GO:0032544: plastid translation	6.92E-03
119	GO:0006002: fructose 6-phosphate metabolic process	6.92E-03
120	GO:0022900: electron transport chain	6.92E-03
121	GO:0015996: chlorophyll catabolic process	6.92E-03
122	GO:0048507: meristem development	7.85E-03
123	GO:0006633: fatty acid biosynthetic process	8.31E-03
124	GO:0048354: mucilage biosynthetic process involved in seed coat development	8.82E-03
125	GO:0006779: porphyrin-containing compound biosynthetic process	8.82E-03
126	GO:0007568: aging	9.11E-03
127	GO:0006535: cysteine biosynthetic process from serine	9.84E-03
128	GO:0006782: protoporphyrinogen IX biosynthetic process	9.84E-03
129	GO:0043069: negative regulation of programmed cell death	9.84E-03
130	GO:0045036: protein targeting to chloroplast	9.84E-03
131	GO:0016051: carbohydrate biosynthetic process	1.00E-02
132	GO:0009853: photorespiration	1.00E-02
133	GO:0019684: photosynthesis, light reaction	1.09E-02
134	GO:0008285: negative regulation of cell proliferation	1.09E-02
135	GO:0006631: fatty acid metabolic process	1.19E-02
136	GO:0005983: starch catabolic process	1.20E-02
137	GO:0045037: protein import into chloroplast stroma	1.20E-02
138	GO:0006790: sulfur compound metabolic process	1.20E-02
139	GO:0006108: malate metabolic process	1.31E-02
140	GO:0006006: glucose metabolic process	1.31E-02
141	GO:0018107: peptidyl-threonine phosphorylation	1.31E-02
142	GO:0009718: anthocyanin-containing compound biosynthetic process	1.31E-02
143	GO:0005986: sucrose biosynthetic process	1.31E-02
144	GO:0034605: cellular response to heat	1.43E-02
145	GO:0010143: cutin biosynthetic process	1.43E-02
146	GO:0010020: chloroplast fission	1.43E-02
147	GO:0009266: response to temperature stimulus	1.43E-02
148	GO:0006855: drug transmembrane transport	1.51E-02
149	GO:0046854: phosphatidylinositol phosphorylation	1.55E-02
150	GO:0007031: peroxisome organization	1.55E-02
151	GO:0006412: translation	1.57E-02
152	GO:0042538: hyperosmotic salinity response	1.63E-02
153	GO:0006636: unsaturated fatty acid biosynthetic process	1.67E-02
154	GO:0042254: ribosome biogenesis	1.67E-02
155	GO:0006289: nucleotide-excision repair	1.80E-02
156	GO:0019344: cysteine biosynthetic process	1.80E-02
157	GO:0008299: isoprenoid biosynthetic process	1.93E-02
158	GO:0007017: microtubule-based process	1.93E-02
159	GO:0010073: meristem maintenance	1.93E-02
160	GO:0031408: oxylipin biosynthetic process	2.07E-02
161	GO:0006306: DNA methylation	2.07E-02
162	GO:0016114: terpenoid biosynthetic process	2.07E-02
163	GO:0010431: seed maturation	2.07E-02
164	GO:0010017: red or far-red light signaling pathway	2.21E-02
165	GO:0016226: iron-sulfur cluster assembly	2.21E-02
166	GO:0035428: hexose transmembrane transport	2.21E-02
167	GO:0080092: regulation of pollen tube growth	2.21E-02
168	GO:0019748: secondary metabolic process	2.21E-02
169	GO:0010227: floral organ abscission	2.35E-02
170	GO:0006817: phosphate ion transport	2.49E-02
171	GO:0000271: polysaccharide biosynthetic process	2.79E-02
172	GO:0042335: cuticle development	2.79E-02
173	GO:0042631: cellular response to water deprivation	2.79E-02
174	GO:0006520: cellular amino acid metabolic process	2.94E-02
175	GO:0010182: sugar mediated signaling pathway	2.94E-02
176	GO:0046323: glucose import	2.94E-02
177	GO:0009741: response to brassinosteroid	2.94E-02
178	GO:0007018: microtubule-based movement	3.10E-02
179	GO:0009646: response to absence of light	3.10E-02
180	GO:0009791: post-embryonic development	3.25E-02
181	GO:0010183: pollen tube guidance	3.25E-02
182	GO:0006457: protein folding	3.26E-02
183	GO:0015031: protein transport	3.31E-02
184	GO:0000302: response to reactive oxygen species	3.42E-02
185	GO:0016032: viral process	3.58E-02
186	GO:0032502: developmental process	3.58E-02
187	GO:0007264: small GTPase mediated signal transduction	3.58E-02
188	GO:0009567: double fertilization forming a zygote and endosperm	3.92E-02
189	GO:0010286: heat acclimation	4.09E-02
190	GO:0000910: cytokinesis	4.26E-02
191	GO:0009451: RNA modification	4.39E-02
192	GO:0010228: vegetative to reproductive phase transition of meristem	4.49E-02
193	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.62E-02
194	GO:0042128: nitrate assimilation	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
2	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
3	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
6	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
7	GO:0008465: glycerate dehydrogenase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0036033: mediator complex binding	0.00E+00
10	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
11	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
12	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.21E-06
13	GO:0070402: NADPH binding	1.84E-05
14	GO:0019843: rRNA binding	2.40E-05
15	GO:0016851: magnesium chelatase activity	4.07E-05
16	GO:0016987: sigma factor activity	7.23E-05
17	GO:0009011: starch synthase activity	7.23E-05
18	GO:0001053: plastid sigma factor activity	7.23E-05
19	GO:0008266: poly(U) RNA binding	8.72E-05
20	GO:0016491: oxidoreductase activity	1.31E-04
21	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.63E-04
22	GO:0009496: plastoquinol--plastocyanin reductase activity	3.40E-04
23	GO:0080132: fatty acid alpha-hydroxylase activity	3.40E-04
24	GO:0004325: ferrochelatase activity	3.40E-04
25	GO:0008746: NAD(P)+ transhydrogenase activity	3.40E-04
26	GO:0004853: uroporphyrinogen decarboxylase activity	3.40E-04
27	GO:0042586: peptide deformylase activity	3.40E-04
28	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.40E-04
29	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	3.40E-04
30	GO:0005227: calcium activated cation channel activity	3.40E-04
31	GO:0016630: protochlorophyllide reductase activity	7.40E-04
32	GO:0004829: threonine-tRNA ligase activity	7.40E-04
33	GO:0019156: isoamylase activity	7.40E-04
34	GO:0008934: inositol monophosphate 1-phosphatase activity	7.40E-04
35	GO:0052833: inositol monophosphate 4-phosphatase activity	7.40E-04
36	GO:0008728: GTP diphosphokinase activity	7.40E-04
37	GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	7.40E-04
38	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.40E-04
39	GO:0050017: L-3-cyanoalanine synthase activity	7.40E-04
40	GO:0048531: beta-1,3-galactosyltransferase activity	7.40E-04
41	GO:0042389: omega-3 fatty acid desaturase activity	7.40E-04
42	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.40E-04
43	GO:0004617: phosphoglycerate dehydrogenase activity	7.40E-04
44	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	7.40E-04
45	GO:0052832: inositol monophosphate 3-phosphatase activity	7.40E-04
46	GO:0033201: alpha-1,4-glucan synthase activity	7.40E-04
47	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	7.40E-04
48	GO:0016168: chlorophyll binding	8.43E-04
49	GO:0005504: fatty acid binding	1.20E-03
50	GO:0004373: glycogen (starch) synthase activity	1.20E-03
51	GO:0016992: lipoate synthase activity	1.20E-03
52	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.20E-03
53	GO:0003913: DNA photolyase activity	1.20E-03
54	GO:0004148: dihydrolipoyl dehydrogenase activity	1.20E-03
55	GO:0004751: ribose-5-phosphate isomerase activity	1.20E-03
56	GO:0030267: glyoxylate reductase (NADP) activity	1.20E-03
57	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.20E-03
58	GO:0008864: formyltetrahydrofolate deformylase activity	1.20E-03
59	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.20E-03
60	GO:0031409: pigment binding	1.54E-03
61	GO:0048027: mRNA 5'-UTR binding	1.72E-03
62	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.72E-03
63	GO:0043023: ribosomal large subunit binding	1.72E-03
64	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.72E-03
65	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.72E-03
66	GO:0005515: protein binding	1.74E-03
67	GO:0051537: 2 iron, 2 sulfur cluster binding	2.25E-03
68	GO:0070628: proteasome binding	2.31E-03
69	GO:0045430: chalcone isomerase activity	2.31E-03
70	GO:0043495: protein anchor	2.31E-03
71	GO:0008891: glycolate oxidase activity	2.31E-03
72	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.31E-03
73	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.48E-03
74	GO:0003959: NADPH dehydrogenase activity	2.96E-03
75	GO:0031593: polyubiquitin binding	3.65E-03
76	GO:0004556: alpha-amylase activity	3.65E-03
77	GO:0004130: cytochrome-c peroxidase activity	3.65E-03
78	GO:0035673: oligopeptide transmembrane transporter activity	3.65E-03
79	GO:0042578: phosphoric ester hydrolase activity	3.65E-03
80	GO:0016615: malate dehydrogenase activity	3.65E-03
81	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.65E-03
82	GO:0004332: fructose-bisphosphate aldolase activity	3.65E-03
83	GO:0004872: receptor activity	3.89E-03
84	GO:0048038: quinone binding	4.17E-03
85	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	4.40E-03
86	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.40E-03
87	GO:0030060: L-malate dehydrogenase activity	4.40E-03
88	GO:0005261: cation channel activity	4.40E-03
89	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.40E-03
90	GO:0004124: cysteine synthase activity	4.40E-03
91	GO:0051920: peroxiredoxin activity	4.40E-03
92	GO:0005525: GTP binding	4.96E-03
93	GO:0009881: photoreceptor activity	5.19E-03
94	GO:0019899: enzyme binding	5.19E-03
95	GO:0016209: antioxidant activity	6.03E-03
96	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.92E-03
97	GO:0071949: FAD binding	7.85E-03
98	GO:0030955: potassium ion binding	8.82E-03
99	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	8.82E-03
100	GO:0004743: pyruvate kinase activity	8.82E-03
101	GO:0003735: structural constituent of ribosome	1.06E-02
102	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.09E-02
103	GO:0015198: oligopeptide transporter activity	1.20E-02
104	GO:0042802: identical protein binding	1.27E-02
105	GO:0004565: beta-galactosidase activity	1.31E-02
106	GO:0005315: inorganic phosphate transmembrane transporter activity	1.31E-02
107	GO:0031072: heat shock protein binding	1.31E-02
108	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.43E-02
109	GO:0051287: NAD binding	1.57E-02
110	GO:0004601: peroxidase activity	1.63E-02
111	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.75E-02
112	GO:0051536: iron-sulfur cluster binding	1.80E-02
113	GO:0043130: ubiquitin binding	1.80E-02
114	GO:0003690: double-stranded DNA binding	1.81E-02
115	GO:0016887: ATPase activity	1.82E-02
116	GO:0005509: calcium ion binding	1.94E-02
117	GO:0005506: iron ion binding	2.16E-02
118	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.21E-02
119	GO:0022891: substrate-specific transmembrane transporter activity	2.35E-02
120	GO:0003727: single-stranded RNA binding	2.49E-02
121	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.96E-02
122	GO:0005355: glucose transmembrane transporter activity	3.10E-02
123	GO:0010181: FMN binding	3.10E-02
124	GO:0016853: isomerase activity	3.10E-02
125	GO:0016787: hydrolase activity	3.18E-02
126	GO:0003924: GTPase activity	3.49E-02
127	GO:0003684: damaged DNA binding	3.92E-02
128	GO:0016791: phosphatase activity	3.92E-02
129	GO:0005200: structural constituent of cytoskeleton	4.09E-02
130	GO:0016597: amino acid binding	4.26E-02
131	GO:0003729: mRNA binding	4.29E-02
132	GO:0008017: microtubule binding	4.49E-02