Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G62590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042794: rRNA transcription from plastid promoter0.00E+00
2GO:0044154: histone H3-K14 acetylation0.00E+00
3GO:0045014: negative regulation of transcription by glucose0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0090627: plant epidermal cell differentiation0.00E+00
6GO:1901698: response to nitrogen compound0.00E+00
7GO:0009606: tropism0.00E+00
8GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
9GO:0090322: regulation of superoxide metabolic process0.00E+00
10GO:0000372: Group I intron splicing0.00E+00
11GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
12GO:1903224: regulation of endodermal cell differentiation0.00E+00
13GO:0043972: histone H3-K23 acetylation0.00E+00
14GO:0080127: fruit septum development0.00E+00
15GO:0035884: arabinan biosynthetic process0.00E+00
16GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
17GO:0097164: ammonium ion metabolic process0.00E+00
18GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
19GO:0045184: establishment of protein localization0.00E+00
20GO:0033206: meiotic cytokinesis0.00E+00
21GO:0019988: charged-tRNA amino acid modification0.00E+00
22GO:0090615: mitochondrial mRNA processing0.00E+00
23GO:0000492: box C/D snoRNP assembly0.00E+00
24GO:0031222: arabinan catabolic process0.00E+00
25GO:0042793: transcription from plastid promoter1.76E-09
26GO:0046620: regulation of organ growth2.72E-08
27GO:0009416: response to light stimulus3.32E-06
28GO:0009658: chloroplast organization3.44E-06
29GO:0010569: regulation of double-strand break repair via homologous recombination2.46E-05
30GO:0009734: auxin-activated signaling pathway3.25E-05
31GO:0009733: response to auxin4.53E-05
32GO:0006518: peptide metabolic process7.90E-05
33GO:0009451: RNA modification2.12E-04
34GO:2000038: regulation of stomatal complex development2.73E-04
35GO:1900864: mitochondrial RNA modification2.73E-04
36GO:0080188: RNA-directed DNA methylation5.47E-04
37GO:0009913: epidermal cell differentiation5.68E-04
38GO:2000377: regulation of reactive oxygen species metabolic process7.22E-04
39GO:2000033: regulation of seed dormancy process7.50E-04
40GO:0034757: negative regulation of iron ion transport7.62E-04
41GO:0042659: regulation of cell fate specification7.62E-04
42GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process7.62E-04
43GO:1905039: carboxylic acid transmembrane transport7.62E-04
44GO:1905200: gibberellic acid transmembrane transport7.62E-04
45GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic7.62E-04
46GO:0080112: seed growth7.62E-04
47GO:0043971: histone H3-K18 acetylation7.62E-04
48GO:0090558: plant epidermis development7.62E-04
49GO:0010063: positive regulation of trichoblast fate specification7.62E-04
50GO:1903866: palisade mesophyll development7.62E-04
51GO:0035987: endodermal cell differentiation7.62E-04
52GO:0006436: tryptophanyl-tRNA aminoacylation7.62E-04
53GO:0015904: tetracycline transport7.62E-04
54GO:0006955: immune response9.56E-04
55GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.19E-03
56GO:0042255: ribosome assembly1.19E-03
57GO:0006353: DNA-templated transcription, termination1.19E-03
58GO:0000105: histidine biosynthetic process1.19E-03
59GO:0042127: regulation of cell proliferation1.29E-03
60GO:2000123: positive regulation of stomatal complex development1.65E-03
61GO:1901529: positive regulation of anion channel activity1.65E-03
62GO:1902326: positive regulation of chlorophyll biosynthetic process1.65E-03
63GO:0070981: L-asparagine biosynthetic process1.65E-03
64GO:0010271: regulation of chlorophyll catabolic process1.65E-03
65GO:0018026: peptidyl-lysine monomethylation1.65E-03
66GO:0009662: etioplast organization1.65E-03
67GO:1900033: negative regulation of trichome patterning1.65E-03
68GO:1904143: positive regulation of carotenoid biosynthetic process1.65E-03
69GO:0080009: mRNA methylation1.65E-03
70GO:2000071: regulation of defense response by callose deposition1.65E-03
71GO:0006529: asparagine biosynthetic process1.65E-03
72GO:0000373: Group II intron splicing1.74E-03
73GO:0010305: leaf vascular tissue pattern formation1.74E-03
74GO:0009793: embryo development ending in seed dormancy1.93E-03
75GO:0009926: auxin polar transport1.99E-03
76GO:1900865: chloroplast RNA modification2.06E-03
77GO:0048829: root cap development2.41E-03
78GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.73E-03
79GO:0090708: specification of plant organ axis polarity2.73E-03
80GO:0080117: secondary growth2.73E-03
81GO:0090391: granum assembly2.73E-03
82GO:0042780: tRNA 3'-end processing2.73E-03
83GO:0001578: microtubule bundle formation2.73E-03
84GO:0071705: nitrogen compound transport2.73E-03
85GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.73E-03
86GO:0040008: regulation of growth3.07E-03
87GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.37E-03
88GO:0010588: cotyledon vascular tissue pattern formation3.65E-03
89GO:0010029: regulation of seed germination3.95E-03
90GO:0010239: chloroplast mRNA processing3.97E-03
91GO:0009800: cinnamic acid biosynthetic process3.97E-03
92GO:0010306: rhamnogalacturonan II biosynthetic process3.97E-03
93GO:0007276: gamete generation3.97E-03
94GO:0043481: anthocyanin accumulation in tissues in response to UV light3.97E-03
95GO:0046739: transport of virus in multicellular host3.97E-03
96GO:1902290: positive regulation of defense response to oomycetes3.97E-03
97GO:0010371: regulation of gibberellin biosynthetic process3.97E-03
98GO:1902476: chloride transmembrane transport3.97E-03
99GO:0010071: root meristem specification3.97E-03
100GO:0048481: plant ovule development5.18E-03
101GO:0051322: anaphase5.36E-03
102GO:0071249: cellular response to nitrate5.36E-03
103GO:0030104: water homeostasis5.36E-03
104GO:0006221: pyrimidine nucleotide biosynthetic process5.36E-03
105GO:0006021: inositol biosynthetic process5.36E-03
106GO:0006346: methylation-dependent chromatin silencing5.36E-03
107GO:0006808: regulation of nitrogen utilization5.36E-03
108GO:0006479: protein methylation5.36E-03
109GO:0048629: trichome patterning5.36E-03
110GO:0080147: root hair cell development5.75E-03
111GO:0009863: salicylic acid mediated signaling pathway5.75E-03
112GO:0010187: negative regulation of seed germination5.75E-03
113GO:0032876: negative regulation of DNA endoreduplication6.90E-03
114GO:0080110: sporopollenin biosynthetic process6.90E-03
115GO:0030308: negative regulation of cell growth6.90E-03
116GO:0010375: stomatal complex patterning6.90E-03
117GO:0016131: brassinosteroid metabolic process6.90E-03
118GO:0048497: maintenance of floral organ identity6.90E-03
119GO:0016123: xanthophyll biosynthetic process6.90E-03
120GO:0003333: amino acid transmembrane transport7.00E-03
121GO:0016998: cell wall macromolecule catabolic process7.00E-03
122GO:0009867: jasmonic acid mediated signaling pathway7.02E-03
123GO:2000022: regulation of jasmonic acid mediated signaling pathway7.67E-03
124GO:0030001: metal ion transport8.30E-03
125GO:0009831: plant-type cell wall modification involved in multidimensional cell growth8.38E-03
126GO:0009959: negative gravitropism8.58E-03
127GO:1902456: regulation of stomatal opening8.58E-03
128GO:0016554: cytidine to uridine editing8.58E-03
129GO:0048831: regulation of shoot system development8.58E-03
130GO:0042176: regulation of protein catabolic process8.58E-03
131GO:0003006: developmental process involved in reproduction8.58E-03
132GO:0010315: auxin efflux8.58E-03
133GO:0006559: L-phenylalanine catabolic process8.58E-03
134GO:0009643: photosynthetic acclimation8.58E-03
135GO:0010304: PSII associated light-harvesting complex II catabolic process8.58E-03
136GO:0006284: base-excision repair9.13E-03
137GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.04E-02
138GO:0010310: regulation of hydrogen peroxide metabolic process1.04E-02
139GO:2000067: regulation of root morphogenesis1.04E-02
140GO:0009955: adaxial/abaxial pattern specification1.04E-02
141GO:0071470: cellular response to osmotic stress1.04E-02
142GO:0048509: regulation of meristem development1.04E-02
143GO:1901259: chloroplast rRNA processing1.04E-02
144GO:2000037: regulation of stomatal complex patterning1.04E-02
145GO:0010087: phloem or xylem histogenesis1.07E-02
146GO:0010118: stomatal movement1.07E-02
147GO:0009741: response to brassinosteroid1.16E-02
148GO:0006355: regulation of transcription, DNA-templated1.19E-02
149GO:0006821: chloride transport1.23E-02
150GO:0048437: floral organ development1.23E-02
151GO:0015937: coenzyme A biosynthetic process1.23E-02
152GO:0010103: stomatal complex morphogenesis1.23E-02
153GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.23E-02
154GO:0006401: RNA catabolic process1.23E-02
155GO:0010374: stomatal complex development1.23E-02
156GO:0031347: regulation of defense response1.24E-02
157GO:0009646: response to absence of light1.25E-02
158GO:0042538: hyperosmotic salinity response1.30E-02
159GO:0048825: cotyledon development1.34E-02
160GO:0006364: rRNA processing1.43E-02
161GO:0001522: pseudouridine synthesis1.44E-02
162GO:0009787: regulation of abscisic acid-activated signaling pathway1.44E-02
163GO:0009642: response to light intensity1.44E-02
164GO:0048766: root hair initiation1.44E-02
165GO:0010492: maintenance of shoot apical meristem identity1.44E-02
166GO:0055075: potassium ion homeostasis1.44E-02
167GO:0052543: callose deposition in cell wall1.44E-02
168GO:0032502: developmental process1.53E-02
169GO:0019430: removal of superoxide radicals1.65E-02
170GO:0009880: embryonic pattern specification1.65E-02
171GO:0009827: plant-type cell wall modification1.65E-02
172GO:0010052: guard cell differentiation1.65E-02
173GO:0007186: G-protein coupled receptor signaling pathway1.65E-02
174GO:0010233: phloem transport1.65E-02
175GO:0010497: plasmodesmata-mediated intercellular transport1.65E-02
176GO:0009657: plastid organization1.65E-02
177GO:0032544: plastid translation1.65E-02
178GO:0007389: pattern specification process1.65E-02
179GO:0044030: regulation of DNA methylation1.65E-02
180GO:0010252: auxin homeostasis1.74E-02
181GO:0009828: plant-type cell wall loosening1.74E-02
182GO:0048367: shoot system development1.84E-02
183GO:0009245: lipid A biosynthetic process1.88E-02
184GO:0048507: meristem development1.88E-02
185GO:0048589: developmental growth1.88E-02
186GO:0000902: cell morphogenesis1.88E-02
187GO:0009740: gibberellic acid mediated signaling pathway2.07E-02
188GO:0010027: thylakoid membrane organization2.08E-02
189GO:0042761: very long-chain fatty acid biosynthetic process2.12E-02
190GO:2000280: regulation of root development2.12E-02
191GO:0006349: regulation of gene expression by genetic imprinting2.12E-02
192GO:1900426: positive regulation of defense response to bacterium2.12E-02
193GO:0031627: telomeric loop formation2.37E-02
194GO:0010048: vernalization response2.37E-02
195GO:0006535: cysteine biosynthetic process from serine2.37E-02
196GO:0006949: syncytium formation2.37E-02
197GO:0006351: transcription, DNA-templated2.45E-02
198GO:0046856: phosphatidylinositol dephosphorylation2.62E-02
199GO:0010015: root morphogenesis2.62E-02
200GO:0009682: induced systemic resistance2.62E-02
201GO:1903507: negative regulation of nucleic acid-templated transcription2.62E-02
202GO:0009750: response to fructose2.62E-02
203GO:0015770: sucrose transport2.62E-02
204GO:0048765: root hair cell differentiation2.62E-02
205GO:0000160: phosphorelay signal transduction system2.86E-02
206GO:0008361: regulation of cell size2.89E-02
207GO:0006790: sulfur compound metabolic process2.89E-02
208GO:0012501: programmed cell death2.89E-02
209GO:0015706: nitrate transport2.89E-02
210GO:0010152: pollen maturation2.89E-02
211GO:0045037: protein import into chloroplast stroma2.89E-02
212GO:0010582: floral meristem determinacy2.89E-02
213GO:0010218: response to far red light3.01E-02
214GO:0009767: photosynthetic electron transport chain3.17E-02
215GO:0010102: lateral root morphogenesis3.17E-02
216GO:0009691: cytokinin biosynthetic process3.17E-02
217GO:0006865: amino acid transport3.30E-02
218GO:0080167: response to karrikin3.32E-02
219GO:0048467: gynoecium development3.45E-02
220GO:0006541: glutamine metabolic process3.45E-02
221GO:0010020: chloroplast fission3.45E-02
222GO:0006270: DNA replication initiation3.45E-02
223GO:0009887: animal organ morphogenesis3.45E-02
224GO:0009790: embryo development3.59E-02
225GO:0010167: response to nitrate3.75E-02
226GO:0009901: anther dehiscence3.75E-02
227GO:0046854: phosphatidylinositol phosphorylation3.75E-02
228GO:0006636: unsaturated fatty acid biosynthetic process4.05E-02
229GO:0006071: glycerol metabolic process4.05E-02
230GO:0006833: water transport4.05E-02
231GO:0006468: protein phosphorylation4.29E-02
232GO:0019344: cysteine biosynthetic process4.36E-02
233GO:0045892: negative regulation of transcription, DNA-templated4.41E-02
234GO:0051302: regulation of cell division4.67E-02
235GO:0006418: tRNA aminoacylation for protein translation4.67E-02
236GO:0006874: cellular calcium ion homeostasis4.67E-02
237GO:0010073: meristem maintenance4.67E-02
238GO:0006825: copper ion transport4.67E-02
239GO:0006306: DNA methylation4.99E-02
240GO:0010431: seed maturation4.99E-02
RankGO TermAdjusted P value
1GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
2GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
3GO:0008859: exoribonuclease II activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0042834: peptidoglycan binding0.00E+00
6GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0052834: inositol monophosphate phosphatase activity0.00E+00
9GO:0003723: RNA binding3.54E-05
10GO:0008725: DNA-3-methyladenine glycosylase activity4.09E-04
11GO:1905201: gibberellin transmembrane transporter activity7.62E-04
12GO:0004632: phosphopantothenate--cysteine ligase activity7.62E-04
13GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity7.62E-04
14GO:0016274: protein-arginine N-methyltransferase activity7.62E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.62E-04
16GO:0008395: steroid hydroxylase activity7.62E-04
17GO:0004071: aspartate-ammonia ligase activity7.62E-04
18GO:0004830: tryptophan-tRNA ligase activity7.62E-04
19GO:0052381: tRNA dimethylallyltransferase activity7.62E-04
20GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor7.62E-04
21GO:0010347: L-galactose-1-phosphate phosphatase activity7.62E-04
22GO:0004400: histidinol-phosphate transaminase activity7.62E-04
23GO:0004519: endonuclease activity8.25E-04
24GO:0004222: metalloendopeptidase activity1.09E-03
25GO:0003727: single-stranded RNA binding1.29E-03
26GO:0003697: single-stranded DNA binding1.35E-03
27GO:0052832: inositol monophosphate 3-phosphatase activity1.65E-03
28GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.65E-03
29GO:0008805: carbon-monoxide oxygenase activity1.65E-03
30GO:0008934: inositol monophosphate 1-phosphatase activity1.65E-03
31GO:0008493: tetracycline transporter activity1.65E-03
32GO:0052833: inositol monophosphate 4-phosphatase activity1.65E-03
33GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.65E-03
34GO:0009884: cytokinin receptor activity1.65E-03
35GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.65E-03
36GO:0042389: omega-3 fatty acid desaturase activity1.65E-03
37GO:0000989: transcription factor activity, transcription factor binding1.74E-03
38GO:0017150: tRNA dihydrouridine synthase activity2.73E-03
39GO:0045548: phenylalanine ammonia-lyase activity2.73E-03
40GO:0042781: 3'-tRNA processing endoribonuclease activity2.73E-03
41GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.73E-03
42GO:0016805: dipeptidase activity2.73E-03
43GO:0005034: osmosensor activity2.73E-03
44GO:0009982: pseudouridine synthase activity3.65E-03
45GO:0003725: double-stranded RNA binding3.65E-03
46GO:0001872: (1->3)-beta-D-glucan binding3.97E-03
47GO:0009041: uridylate kinase activity3.97E-03
48GO:0004871: signal transducer activity4.95E-03
49GO:0010011: auxin binding5.36E-03
50GO:0010328: auxin influx transmembrane transporter activity5.36E-03
51GO:0010385: double-stranded methylated DNA binding5.36E-03
52GO:0005253: anion channel activity5.36E-03
53GO:0046556: alpha-L-arabinofuranosidase activity5.36E-03
54GO:0004930: G-protein coupled receptor activity5.36E-03
55GO:0016279: protein-lysine N-methyltransferase activity5.36E-03
56GO:0003677: DNA binding5.55E-03
57GO:0008168: methyltransferase activity6.75E-03
58GO:0019843: rRNA binding7.67E-03
59GO:0030570: pectate lyase activity8.38E-03
60GO:0031177: phosphopantetheine binding8.58E-03
61GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity8.58E-03
62GO:0004784: superoxide dismutase activity8.58E-03
63GO:0005247: voltage-gated chloride channel activity8.58E-03
64GO:0003688: DNA replication origin binding8.58E-03
65GO:0003700: transcription factor activity, sequence-specific DNA binding9.00E-03
66GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding9.35E-03
67GO:0004124: cysteine synthase activity1.04E-02
68GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.04E-02
69GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.04E-02
70GO:0016832: aldehyde-lyase activity1.04E-02
71GO:0000035: acyl binding1.04E-02
72GO:0019900: kinase binding1.04E-02
73GO:0001085: RNA polymerase II transcription factor binding1.16E-02
74GO:0030515: snoRNA binding1.23E-02
75GO:0019901: protein kinase binding1.34E-02
76GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.44E-02
77GO:0003690: double-stranded DNA binding1.49E-02
78GO:0008173: RNA methyltransferase activity1.65E-02
79GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.65E-02
80GO:0008237: metallopeptidase activity1.85E-02
81GO:0008889: glycerophosphodiester phosphodiesterase activity1.88E-02
82GO:0004650: polygalacturonase activity1.99E-02
83GO:0004674: protein serine/threonine kinase activity2.08E-02
84GO:0009672: auxin:proton symporter activity2.12E-02
85GO:0004673: protein histidine kinase activity2.37E-02
86GO:0008515: sucrose transmembrane transporter activity2.62E-02
87GO:0003691: double-stranded telomeric DNA binding2.62E-02
88GO:0008559: xenobiotic-transporting ATPase activity2.62E-02
89GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.89E-02
90GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.15E-02
91GO:0000175: 3'-5'-exoribonuclease activity3.17E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity3.17E-02
93GO:0010329: auxin efflux transmembrane transporter activity3.17E-02
94GO:0031072: heat shock protein binding3.17E-02
95GO:0000155: phosphorelay sensor kinase activity3.17E-02
96GO:0016829: lyase activity3.27E-02
97GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.46E-02
98GO:0004970: ionotropic glutamate receptor activity3.75E-02
99GO:0051119: sugar transmembrane transporter activity3.75E-02
100GO:0005217: intracellular ligand-gated ion channel activity3.75E-02
101GO:0004190: aspartic-type endopeptidase activity3.75E-02
102GO:0043565: sequence-specific DNA binding4.34E-02
103GO:0003714: transcription corepressor activity4.36E-02
104GO:0043424: protein histidine kinase binding4.67E-02
105GO:0043621: protein self-association4.80E-02
106GO:0015293: symporter activity4.98E-02
107GO:0004540: ribonuclease activity4.99E-02
108GO:0004176: ATP-dependent peptidase activity4.99E-02
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Gene type



Gene DE type