Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G62520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0061157: mRNA destabilization0.00E+00
2GO:1901698: response to nitrogen compound0.00E+00
3GO:0009606: tropism0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:1903224: regulation of endodermal cell differentiation0.00E+00
6GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
7GO:0097164: ammonium ion metabolic process0.00E+00
8GO:0045184: establishment of protein localization0.00E+00
9GO:0031222: arabinan catabolic process0.00E+00
10GO:0070979: protein K11-linked ubiquitination0.00E+00
11GO:0046620: regulation of organ growth3.83E-07
12GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.78E-06
13GO:0009926: auxin polar transport7.81E-06
14GO:0007389: pattern specification process3.39E-05
15GO:0051513: regulation of monopolar cell growth7.17E-05
16GO:2000038: regulation of stomatal complex development1.25E-04
17GO:0010252: auxin homeostasis1.40E-04
18GO:0032876: negative regulation of DNA endoreduplication1.92E-04
19GO:0009734: auxin-activated signaling pathway2.44E-04
20GO:0000160: phosphorelay signal transduction system3.25E-04
21GO:0006468: protein phosphorylation3.67E-04
22GO:0009733: response to auxin3.77E-04
23GO:0034970: histone H3-R2 methylation4.70E-04
24GO:0042659: regulation of cell fate specification4.70E-04
25GO:0034972: histone H3-R26 methylation4.70E-04
26GO:0070509: calcium ion import4.70E-04
27GO:0090558: plant epidermis development4.70E-04
28GO:0010480: microsporocyte differentiation4.70E-04
29GO:0034971: histone H3-R17 methylation4.70E-04
30GO:0035987: endodermal cell differentiation4.70E-04
31GO:0006436: tryptophanyl-tRNA aminoacylation4.70E-04
32GO:0000066: mitochondrial ornithine transport4.70E-04
33GO:0034757: negative regulation of iron ion transport4.70E-04
34GO:0010254: nectary development1.01E-03
35GO:0070981: L-asparagine biosynthetic process1.01E-03
36GO:0010271: regulation of chlorophyll catabolic process1.01E-03
37GO:0010434: bract formation1.01E-03
38GO:0018026: peptidyl-lysine monomethylation1.01E-03
39GO:1900033: negative regulation of trichome patterning1.01E-03
40GO:0048439: flower morphogenesis1.01E-03
41GO:0009786: regulation of asymmetric cell division1.01E-03
42GO:0006529: asparagine biosynthetic process1.01E-03
43GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.01E-03
44GO:2000123: positive regulation of stomatal complex development1.01E-03
45GO:0009736: cytokinin-activated signaling pathway1.03E-03
46GO:0009416: response to light stimulus1.50E-03
47GO:0010582: floral meristem determinacy1.55E-03
48GO:0090708: specification of plant organ axis polarity1.65E-03
49GO:0080117: secondary growth1.65E-03
50GO:0031145: anaphase-promoting complex-dependent catabolic process1.65E-03
51GO:0051604: protein maturation1.65E-03
52GO:0071705: nitrogen compound transport1.65E-03
53GO:0001578: microtubule bundle formation1.65E-03
54GO:0016050: vesicle organization1.65E-03
55GO:0009954: proximal/distal pattern formation1.65E-03
56GO:0009767: photosynthetic electron transport chain1.76E-03
57GO:0090351: seedling development2.22E-03
58GO:0070588: calcium ion transmembrane transport2.22E-03
59GO:0051639: actin filament network formation2.39E-03
60GO:0044211: CTP salvage2.39E-03
61GO:0019048: modulation by virus of host morphology or physiology2.39E-03
62GO:0046739: transport of virus in multicellular host2.39E-03
63GO:2000904: regulation of starch metabolic process2.39E-03
64GO:0031048: chromatin silencing by small RNA2.39E-03
65GO:0051289: protein homotetramerization2.39E-03
66GO:1902476: chloride transmembrane transport2.39E-03
67GO:0007231: osmosensory signaling pathway2.39E-03
68GO:0030071: regulation of mitotic metaphase/anaphase transition2.39E-03
69GO:0009944: polarity specification of adaxial/abaxial axis2.75E-03
70GO:0005992: trehalose biosynthetic process2.75E-03
71GO:0080167: response to karrikin2.86E-03
72GO:0006418: tRNA aminoacylation for protein translation3.04E-03
73GO:0051764: actin crosslink formation3.22E-03
74GO:0051322: anaphase3.22E-03
75GO:0071249: cellular response to nitrate3.22E-03
76GO:0022622: root system development3.22E-03
77GO:0030104: water homeostasis3.22E-03
78GO:0033500: carbohydrate homeostasis3.22E-03
79GO:0051567: histone H3-K9 methylation3.22E-03
80GO:0044205: 'de novo' UMP biosynthetic process3.22E-03
81GO:0044206: UMP salvage3.22E-03
82GO:0048629: trichome patterning3.22E-03
83GO:0010082: regulation of root meristem growth3.99E-03
84GO:0010158: abaxial cell fate specification4.13E-03
85GO:0030308: negative regulation of cell growth4.13E-03
86GO:0010375: stomatal complex patterning4.13E-03
87GO:0006544: glycine metabolic process4.13E-03
88GO:1902183: regulation of shoot apical meristem development4.13E-03
89GO:0016123: xanthophyll biosynthetic process4.13E-03
90GO:0010087: phloem or xylem histogenesis5.09E-03
91GO:0006655: phosphatidylglycerol biosynthetic process5.11E-03
92GO:0042793: transcription from plastid promoter5.11E-03
93GO:0048831: regulation of shoot system development5.11E-03
94GO:0010315: auxin efflux5.11E-03
95GO:0006206: pyrimidine nucleobase metabolic process5.11E-03
96GO:0018258: protein O-linked glycosylation via hydroxyproline5.11E-03
97GO:0016458: gene silencing5.11E-03
98GO:0006563: L-serine metabolic process5.11E-03
99GO:0010405: arabinogalactan protein metabolic process5.11E-03
100GO:0009958: positive gravitropism5.49E-03
101GO:0048544: recognition of pollen5.91E-03
102GO:0048364: root development6.12E-03
103GO:0010067: procambium histogenesis6.17E-03
104GO:0009942: longitudinal axis specification6.17E-03
105GO:0048509: regulation of meristem development6.17E-03
106GO:0030488: tRNA methylation6.17E-03
107GO:2000037: regulation of stomatal complex patterning6.17E-03
108GO:2000067: regulation of root morphogenesis6.17E-03
109GO:0005975: carbohydrate metabolic process6.56E-03
110GO:0010583: response to cyclopentenone7.26E-03
111GO:0032502: developmental process7.26E-03
112GO:0048528: post-embryonic root development7.30E-03
113GO:0006821: chloride transport7.30E-03
114GO:0010050: vegetative phase change7.30E-03
115GO:0048437: floral organ development7.30E-03
116GO:0010103: stomatal complex morphogenesis7.30E-03
117GO:0032880: regulation of protein localization7.30E-03
118GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway7.30E-03
119GO:0009610: response to symbiotic fungus7.30E-03
120GO:0006955: immune response7.30E-03
121GO:0009787: regulation of abscisic acid-activated signaling pathway8.49E-03
122GO:0009850: auxin metabolic process8.49E-03
123GO:0030162: regulation of proteolysis8.49E-03
124GO:0042255: ribosome assembly8.49E-03
125GO:0032875: regulation of DNA endoreduplication8.49E-03
126GO:0048766: root hair initiation8.49E-03
127GO:0055075: potassium ion homeostasis8.49E-03
128GO:0051607: defense response to virus9.30E-03
129GO:0009827: plant-type cell wall modification9.75E-03
130GO:0010497: plasmodesmata-mediated intercellular transport9.75E-03
131GO:0006526: arginine biosynthetic process9.75E-03
132GO:0010027: thylakoid membrane organization9.85E-03
133GO:0009051: pentose-phosphate shunt, oxidative branch1.11E-02
134GO:2000024: regulation of leaf development1.11E-02
135GO:0000373: Group II intron splicing1.11E-02
136GO:0000902: cell morphogenesis1.11E-02
137GO:0009638: phototropism1.25E-02
138GO:0035999: tetrahydrofolate interconversion1.25E-02
139GO:2000280: regulation of root development1.25E-02
140GO:0031425: chloroplast RNA processing1.25E-02
141GO:0048481: plant ovule development1.29E-02
142GO:0006535: cysteine biosynthetic process from serine1.39E-02
143GO:0030422: production of siRNA involved in RNA interference1.39E-02
144GO:0048829: root cap development1.39E-02
145GO:0006949: syncytium formation1.39E-02
146GO:0006259: DNA metabolic process1.39E-02
147GO:0016567: protein ubiquitination1.41E-02
148GO:0006816: calcium ion transport1.54E-02
149GO:0006265: DNA topological change1.54E-02
150GO:0009773: photosynthetic electron transport in photosystem I1.54E-02
151GO:0048229: gametophyte development1.54E-02
152GO:0010015: root morphogenesis1.54E-02
153GO:0040008: regulation of growth1.65E-02
154GO:0008361: regulation of cell size1.70E-02
155GO:0015706: nitrate transport1.70E-02
156GO:0016024: CDP-diacylglycerol biosynthetic process1.70E-02
157GO:2000012: regulation of auxin polar transport1.86E-02
158GO:0010628: positive regulation of gene expression1.86E-02
159GO:0009785: blue light signaling pathway1.86E-02
160GO:0006006: glucose metabolic process1.86E-02
161GO:0009691: cytokinin biosynthetic process1.86E-02
162GO:0010075: regulation of meristem growth1.86E-02
163GO:0006839: mitochondrial transport1.87E-02
164GO:0071555: cell wall organization1.92E-02
165GO:0006897: endocytosis1.95E-02
166GO:0009739: response to gibberellin2.01E-02
167GO:0010207: photosystem II assembly2.03E-02
168GO:0006541: glutamine metabolic process2.03E-02
169GO:0010223: secondary shoot formation2.03E-02
170GO:0009934: regulation of meristem structural organization2.03E-02
171GO:0010114: response to red light2.12E-02
172GO:0010167: response to nitrate2.20E-02
173GO:0030154: cell differentiation2.26E-02
174GO:0008643: carbohydrate transport2.29E-02
175GO:0006071: glycerol metabolic process2.38E-02
176GO:0006833: water transport2.38E-02
177GO:0080147: root hair cell development2.56E-02
178GO:0051017: actin filament bundle assembly2.56E-02
179GO:0019344: cysteine biosynthetic process2.56E-02
180GO:0051302: regulation of cell division2.74E-02
181GO:0006825: copper ion transport2.74E-02
182GO:0006306: DNA methylation2.94E-02
183GO:0016998: cell wall macromolecule catabolic process2.94E-02
184GO:0006357: regulation of transcription from RNA polymerase II promoter2.98E-02
185GO:0009658: chloroplast organization3.03E-02
186GO:0006730: one-carbon metabolic process3.13E-02
187GO:0031348: negative regulation of defense response3.13E-02
188GO:0009909: regulation of flower development3.16E-02
189GO:0007165: signal transduction3.25E-02
190GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.33E-02
191GO:0071215: cellular response to abscisic acid stimulus3.33E-02
192GO:0009686: gibberellin biosynthetic process3.33E-02
193GO:0001944: vasculature development3.33E-02
194GO:0010227: floral organ abscission3.33E-02
195GO:0006284: base-excision repair3.54E-02
196GO:0010089: xylem development3.54E-02
197GO:0009723: response to ethylene3.63E-02
198GO:0070417: cellular response to cold3.74E-02
199GO:0008284: positive regulation of cell proliferation3.74E-02
200GO:0009740: gibberellic acid mediated signaling pathway3.82E-02
201GO:0048653: anther development3.96E-02
202GO:0042631: cellular response to water deprivation3.96E-02
203GO:0000226: microtubule cytoskeleton organization3.96E-02
204GO:0008033: tRNA processing3.96E-02
205GO:0006342: chromatin silencing4.17E-02
206GO:0009741: response to brassinosteroid4.17E-02
207GO:0007018: microtubule-based movement4.39E-02
208GO:0007059: chromosome segregation4.39E-02
209GO:0009646: response to absence of light4.39E-02
210GO:0008654: phospholipid biosynthetic process4.62E-02
211GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.85E-02
212GO:0071554: cell wall organization or biogenesis4.85E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0070009: serine-type aminopeptidase activity0.00E+00
4GO:0004674: protein serine/threonine kinase activity4.20E-05
5GO:0009672: auxin:proton symporter activity6.10E-05
6GO:0001872: (1->3)-beta-D-glucan binding7.17E-05
7GO:0010329: auxin efflux transmembrane transporter activity1.47E-04
8GO:0004650: polygalacturonase activity2.84E-04
9GO:0042834: peptidoglycan binding4.70E-04
10GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity4.70E-04
11GO:0005290: L-histidine transmembrane transporter activity4.70E-04
12GO:0004008: copper-exporting ATPase activity4.70E-04
13GO:0004071: aspartate-ammonia ligase activity4.70E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.70E-04
15GO:0052381: tRNA dimethylallyltransferase activity4.70E-04
16GO:0004830: tryptophan-tRNA ligase activity4.70E-04
17GO:0016301: kinase activity9.85E-04
18GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.01E-03
19GO:0008805: carbon-monoxide oxygenase activity1.01E-03
20GO:0000064: L-ornithine transmembrane transporter activity1.01E-03
21GO:0015929: hexosaminidase activity1.01E-03
22GO:0004563: beta-N-acetylhexosaminidase activity1.01E-03
23GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.01E-03
24GO:0009884: cytokinin receptor activity1.01E-03
25GO:0035241: protein-arginine omega-N monomethyltransferase activity1.01E-03
26GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.01E-03
27GO:0050017: L-3-cyanoalanine synthase activity1.01E-03
28GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.01E-03
29GO:0000156: phosphorelay response regulator activity1.06E-03
30GO:0004805: trehalose-phosphatase activity1.17E-03
31GO:0017150: tRNA dihydrouridine synthase activity1.65E-03
32GO:0005034: osmosensor activity1.65E-03
33GO:0016707: gibberellin 3-beta-dioxygenase activity1.65E-03
34GO:0070180: large ribosomal subunit rRNA binding1.65E-03
35GO:0008469: histone-arginine N-methyltransferase activity1.65E-03
36GO:0005262: calcium channel activity1.76E-03
37GO:0005524: ATP binding2.12E-03
38GO:0004672: protein kinase activity2.25E-03
39GO:0015181: arginine transmembrane transporter activity2.39E-03
40GO:0035197: siRNA binding2.39E-03
41GO:0015189: L-lysine transmembrane transporter activity2.39E-03
42GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.22E-03
43GO:0019199: transmembrane receptor protein kinase activity3.22E-03
44GO:0005253: anion channel activity3.22E-03
45GO:0046556: alpha-L-arabinofuranosidase activity3.22E-03
46GO:0016279: protein-lysine N-methyltransferase activity3.22E-03
47GO:0004845: uracil phosphoribosyltransferase activity3.22E-03
48GO:0004345: glucose-6-phosphate dehydrogenase activity3.22E-03
49GO:0004372: glycine hydroxymethyltransferase activity4.13E-03
50GO:0008725: DNA-3-methyladenine glycosylase activity4.13E-03
51GO:0004871: signal transducer activity4.27E-03
52GO:0003727: single-stranded RNA binding4.34E-03
53GO:0004812: aminoacyl-tRNA ligase activity4.71E-03
54GO:1990714: hydroxyproline O-galactosyltransferase activity5.11E-03
55GO:0005247: voltage-gated chloride channel activity5.11E-03
56GO:0004605: phosphatidate cytidylyltransferase activity5.11E-03
57GO:0008195: phosphatidate phosphatase activity6.17E-03
58GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.17E-03
59GO:0004849: uridine kinase activity6.17E-03
60GO:0004656: procollagen-proline 4-dioxygenase activity6.17E-03
61GO:0019900: kinase binding6.17E-03
62GO:0004124: cysteine synthase activity6.17E-03
63GO:0030246: carbohydrate binding8.76E-03
64GO:0005375: copper ion transmembrane transporter activity9.75E-03
65GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.75E-03
66GO:0008889: glycerophosphodiester phosphodiesterase activity1.11E-02
67GO:0030247: polysaccharide binding1.16E-02
68GO:0016829: lyase activity1.28E-02
69GO:0004252: serine-type endopeptidase activity1.32E-02
70GO:0004673: protein histidine kinase activity1.39E-02
71GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.44E-02
72GO:0005089: Rho guanyl-nucleotide exchange factor activity1.54E-02
73GO:0042803: protein homodimerization activity1.54E-02
74GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.69E-02
75GO:0004521: endoribonuclease activity1.70E-02
76GO:0004712: protein serine/threonine/tyrosine kinase activity1.79E-02
77GO:0004022: alcohol dehydrogenase (NAD) activity1.86E-02
78GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.86E-02
79GO:0004089: carbonate dehydratase activity1.86E-02
80GO:0031072: heat shock protein binding1.86E-02
81GO:0000155: phosphorelay sensor kinase activity1.86E-02
82GO:0008083: growth factor activity2.03E-02
83GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.03E-02
84GO:0035091: phosphatidylinositol binding2.29E-02
85GO:0005215: transporter activity2.33E-02
86GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.47E-02
87GO:0004857: enzyme inhibitor activity2.56E-02
88GO:0008134: transcription factor binding2.56E-02
89GO:0031418: L-ascorbic acid binding2.56E-02
90GO:0043424: protein histidine kinase binding2.74E-02
91GO:0005345: purine nucleobase transmembrane transporter activity2.74E-02
92GO:0035251: UDP-glucosyltransferase activity2.94E-02
93GO:0004176: ATP-dependent peptidase activity2.94E-02
94GO:0033612: receptor serine/threonine kinase binding2.94E-02
95GO:0008408: 3'-5' exonuclease activity2.94E-02
96GO:0022891: substrate-specific transmembrane transporter activity3.33E-02
97GO:0008514: organic anion transmembrane transporter activity3.54E-02
98GO:0004527: exonuclease activity4.17E-02
99GO:0019901: protein kinase binding4.62E-02
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Gene type



Gene DE type