Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G62180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0046460: neutral lipid biosynthetic process0.00E+00
4GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
5GO:0031116: positive regulation of microtubule polymerization0.00E+00
6GO:0051924: regulation of calcium ion transport0.00E+00
7GO:0010068: protoderm histogenesis0.00E+00
8GO:0042407: cristae formation0.00E+00
9GO:0042817: pyridoxal metabolic process0.00E+00
10GO:0015882: L-ascorbic acid transport0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0015843: methylammonium transport0.00E+00
13GO:0097275: cellular ammonia homeostasis0.00E+00
14GO:0043488: regulation of mRNA stability0.00E+00
15GO:0009658: chloroplast organization5.07E-07
16GO:0006164: purine nucleotide biosynthetic process5.48E-05
17GO:0010020: chloroplast fission1.26E-04
18GO:0005992: trehalose biosynthetic process2.04E-04
19GO:0042372: phylloquinone biosynthetic process2.88E-04
20GO:0006400: tRNA modification3.73E-04
21GO:0071028: nuclear mRNA surveillance4.02E-04
22GO:0046520: sphingoid biosynthetic process4.02E-04
23GO:0043266: regulation of potassium ion transport4.02E-04
24GO:0006659: phosphatidylserine biosynthetic process4.02E-04
25GO:0042371: vitamin K biosynthetic process4.02E-04
26GO:0043087: regulation of GTPase activity4.02E-04
27GO:2000021: regulation of ion homeostasis4.02E-04
28GO:1902458: positive regulation of stomatal opening4.02E-04
29GO:0010028: xanthophyll cycle4.02E-04
30GO:0006177: GMP biosynthetic process4.02E-04
31GO:0005991: trehalose metabolic process4.02E-04
32GO:0006419: alanyl-tRNA aminoacylation4.02E-04
33GO:0070413: trehalose metabolism in response to stress4.66E-04
34GO:0010206: photosystem II repair6.82E-04
35GO:0000373: Group II intron splicing6.82E-04
36GO:0006739: NADP metabolic process8.71E-04
37GO:0034475: U4 snRNA 3'-end processing8.71E-04
38GO:0060359: response to ammonium ion8.71E-04
39GO:0031537: regulation of anthocyanin metabolic process8.71E-04
40GO:0007154: cell communication8.71E-04
41GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.71E-04
42GO:0006423: cysteinyl-tRNA aminoacylation8.71E-04
43GO:0042550: photosystem I stabilization8.71E-04
44GO:0031125: rRNA 3'-end processing8.71E-04
45GO:1903426: regulation of reactive oxygen species biosynthetic process8.71E-04
46GO:0071051: polyadenylation-dependent snoRNA 3'-end processing8.71E-04
47GO:0045036: protein targeting to chloroplast9.37E-04
48GO:0048367: shoot system development9.75E-04
49GO:0045037: protein import into chloroplast stroma1.23E-03
50GO:0051127: positive regulation of actin nucleation1.41E-03
51GO:0080055: low-affinity nitrate transport1.41E-03
52GO:0001578: microtubule bundle formation1.41E-03
53GO:0043157: response to cation stress1.41E-03
54GO:0030261: chromosome condensation1.41E-03
55GO:0016075: rRNA catabolic process1.41E-03
56GO:0033591: response to L-ascorbic acid1.41E-03
57GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.41E-03
58GO:0006468: protein phosphorylation1.74E-03
59GO:0090351: seedling development1.76E-03
60GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.00E-03
61GO:0009226: nucleotide-sugar biosynthetic process2.04E-03
62GO:0048645: animal organ formation2.04E-03
63GO:0008615: pyridoxine biosynthetic process2.04E-03
64GO:0015696: ammonium transport2.04E-03
65GO:0043572: plastid fission2.04E-03
66GO:2001141: regulation of RNA biosynthetic process2.04E-03
67GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.04E-03
68GO:0051639: actin filament network formation2.04E-03
69GO:0072488: ammonium transmembrane transport2.74E-03
70GO:0006021: inositol biosynthetic process2.74E-03
71GO:0007020: microtubule nucleation2.74E-03
72GO:0006734: NADH metabolic process2.74E-03
73GO:0009165: nucleotide biosynthetic process2.74E-03
74GO:0010109: regulation of photosynthesis2.74E-03
75GO:0051764: actin crosslink formation2.74E-03
76GO:0051322: anaphase2.74E-03
77GO:0006730: one-carbon metabolic process2.90E-03
78GO:0010082: regulation of root meristem growth3.16E-03
79GO:0007166: cell surface receptor signaling pathway3.47E-03
80GO:0046785: microtubule polymerization3.51E-03
81GO:0010236: plastoquinone biosynthetic process3.51E-03
82GO:0071368: cellular response to cytokinin stimulus3.51E-03
83GO:0045038: protein import into chloroplast thylakoid membrane3.51E-03
84GO:0048578: positive regulation of long-day photoperiodism, flowering3.51E-03
85GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.73E-03
86GO:0080022: primary root development4.03E-03
87GO:0006139: nucleobase-containing compound metabolic process4.35E-03
88GO:0016554: cytidine to uridine editing4.35E-03
89GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.35E-03
90GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.35E-03
91GO:0009959: negative gravitropism4.35E-03
92GO:0009082: branched-chain amino acid biosynthetic process5.24E-03
93GO:0034389: lipid particle organization5.24E-03
94GO:0009099: valine biosynthetic process5.24E-03
95GO:0030488: tRNA methylation5.24E-03
96GO:0080113: regulation of seed growth5.24E-03
97GO:0080086: stamen filament development5.24E-03
98GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.24E-03
99GO:0080036: regulation of cytokinin-activated signaling pathway5.24E-03
100GO:0030163: protein catabolic process6.11E-03
101GO:0010196: nonphotochemical quenching6.19E-03
102GO:0009610: response to symbiotic fungus6.19E-03
103GO:0048528: post-embryonic root development6.19E-03
104GO:0009772: photosynthetic electron transport in photosystem II6.19E-03
105GO:0006402: mRNA catabolic process7.20E-03
106GO:0006605: protein targeting7.20E-03
107GO:0019375: galactolipid biosynthetic process7.20E-03
108GO:0046620: regulation of organ growth7.20E-03
109GO:0010078: maintenance of root meristem identity7.20E-03
110GO:0009704: de-etiolation7.20E-03
111GO:2000070: regulation of response to water deprivation7.20E-03
112GO:0048564: photosystem I assembly7.20E-03
113GO:0006508: proteolysis8.01E-03
114GO:0009657: plastid organization8.26E-03
115GO:0009097: isoleucine biosynthetic process8.26E-03
116GO:0043562: cellular response to nitrogen levels8.26E-03
117GO:0009932: cell tip growth8.26E-03
118GO:0006002: fructose 6-phosphate metabolic process8.26E-03
119GO:0071482: cellular response to light stimulus8.26E-03
120GO:0009735: response to cytokinin8.76E-03
121GO:0019432: triglyceride biosynthetic process9.38E-03
122GO:0006189: 'de novo' IMP biosynthetic process9.38E-03
123GO:0098656: anion transmembrane transport9.38E-03
124GO:0030244: cellulose biosynthetic process1.02E-02
125GO:0042761: very long-chain fatty acid biosynthetic process1.06E-02
126GO:0009098: leucine biosynthetic process1.06E-02
127GO:1900865: chloroplast RNA modification1.06E-02
128GO:0010380: regulation of chlorophyll biosynthetic process1.06E-02
129GO:0031425: chloroplast RNA processing1.06E-02
130GO:0009638: phototropism1.06E-02
131GO:0043067: regulation of programmed cell death1.06E-02
132GO:0009832: plant-type cell wall biogenesis1.07E-02
133GO:0000160: phosphorelay signal transduction system1.07E-02
134GO:0009299: mRNA transcription1.18E-02
135GO:0006535: cysteine biosynthetic process from serine1.18E-02
136GO:0006949: syncytium formation1.18E-02
137GO:1903507: negative regulation of nucleic acid-templated transcription1.30E-02
138GO:0006352: DNA-templated transcription, initiation1.30E-02
139GO:0006415: translational termination1.30E-02
140GO:0009684: indoleacetic acid biosynthetic process1.30E-02
141GO:0010015: root morphogenesis1.30E-02
142GO:0006839: mitochondrial transport1.47E-02
143GO:0006631: fatty acid metabolic process1.54E-02
144GO:0010588: cotyledon vascular tissue pattern formation1.57E-02
145GO:2000012: regulation of auxin polar transport1.57E-02
146GO:0030036: actin cytoskeleton organization1.57E-02
147GO:0009725: response to hormone1.57E-02
148GO:0048467: gynoecium development1.71E-02
149GO:0010207: photosystem II assembly1.71E-02
150GO:0010030: positive regulation of seed germination1.86E-02
151GO:0010025: wax biosynthetic process2.01E-02
152GO:0009833: plant-type primary cell wall biogenesis2.01E-02
153GO:0006071: glycerol metabolic process2.01E-02
154GO:0009664: plant-type cell wall organization2.10E-02
155GO:0009826: unidimensional cell growth2.15E-02
156GO:0080147: root hair cell development2.16E-02
157GO:0007010: cytoskeleton organization2.16E-02
158GO:0051017: actin filament bundle assembly2.16E-02
159GO:0019344: cysteine biosynthetic process2.16E-02
160GO:0009736: cytokinin-activated signaling pathway2.25E-02
161GO:0043622: cortical microtubule organization2.32E-02
162GO:0031408: oxylipin biosynthetic process2.48E-02
163GO:0009793: embryo development ending in seed dormancy2.48E-02
164GO:2000022: regulation of jasmonic acid mediated signaling pathway2.64E-02
165GO:0031348: negative regulation of defense response2.64E-02
166GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.81E-02
167GO:0009306: protein secretion2.99E-02
168GO:0010214: seed coat development2.99E-02
169GO:0009416: response to light stimulus3.24E-02
170GO:0042335: cuticle development3.34E-02
171GO:0010087: phloem or xylem histogenesis3.34E-02
172GO:0042631: cellular response to water deprivation3.34E-02
173GO:0009958: positive gravitropism3.53E-02
174GO:0010197: polar nucleus fusion3.53E-02
175GO:0010182: sugar mediated signaling pathway3.53E-02
176GO:0009646: response to absence of light3.71E-02
177GO:0009791: post-embryonic development3.90E-02
178GO:0048825: cotyledon development3.90E-02
179GO:0008654: phospholipid biosynthetic process3.90E-02
180GO:0009851: auxin biosynthetic process3.90E-02
181GO:0000302: response to reactive oxygen species4.09E-02
182GO:0009733: response to auxin4.11E-02
183GO:0010583: response to cyclopentenone4.29E-02
184GO:0016032: viral process4.29E-02
185GO:0009630: gravitropism4.29E-02
186GO:0010090: trichome morphogenesis4.49E-02
187GO:1901657: glycosyl compound metabolic process4.49E-02
188GO:0016042: lipid catabolic process4.60E-02
189GO:0009790: embryo development4.67E-02
190GO:0009828: plant-type cell wall loosening4.69E-02
191GO:0071805: potassium ion transmembrane transport4.90E-02
RankGO TermAdjusted P value
1GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
2GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
3GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
4GO:0015229: L-ascorbic acid transporter activity0.00E+00
5GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0004056: argininosuccinate lyase activity0.00E+00
8GO:0019136: deoxynucleoside kinase activity0.00E+00
9GO:0003937: IMP cyclohydrolase activity0.00E+00
10GO:0004813: alanine-tRNA ligase activity4.02E-04
11GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.02E-04
12GO:0052856: NADHX epimerase activity4.02E-04
13GO:0046481: digalactosyldiacylglycerol synthase activity4.02E-04
14GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.02E-04
15GO:0052857: NADPHX epimerase activity4.02E-04
16GO:0000170: sphingosine hydroxylase activity4.02E-04
17GO:0050139: nicotinate-N-glucosyltransferase activity4.02E-04
18GO:0046480: galactolipid galactosyltransferase activity4.02E-04
19GO:0005227: calcium activated cation channel activity4.02E-04
20GO:0004733: pyridoxamine-phosphate oxidase activity4.02E-04
21GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.29E-04
22GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.71E-04
23GO:0042284: sphingolipid delta-4 desaturase activity8.71E-04
24GO:0004512: inositol-3-phosphate synthase activity8.71E-04
25GO:0050017: L-3-cyanoalanine synthase activity8.71E-04
26GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.71E-04
27GO:0043425: bHLH transcription factor binding8.71E-04
28GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.71E-04
29GO:0009977: proton motive force dependent protein transmembrane transporter activity8.71E-04
30GO:0003938: IMP dehydrogenase activity8.71E-04
31GO:0004817: cysteine-tRNA ligase activity8.71E-04
32GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.71E-04
33GO:0004805: trehalose-phosphatase activity9.37E-04
34GO:0046524: sucrose-phosphate synthase activity1.41E-03
35GO:0070330: aromatase activity1.41E-03
36GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.41E-03
37GO:0080054: low-affinity nitrate transmembrane transporter activity1.41E-03
38GO:0015462: ATPase-coupled protein transmembrane transporter activity1.41E-03
39GO:0000254: C-4 methylsterol oxidase activity2.04E-03
40GO:0035250: UDP-galactosyltransferase activity2.04E-03
41GO:0052656: L-isoleucine transaminase activity2.04E-03
42GO:0016851: magnesium chelatase activity2.04E-03
43GO:0052654: L-leucine transaminase activity2.04E-03
44GO:0052655: L-valine transaminase activity2.04E-03
45GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.04E-03
46GO:0005525: GTP binding2.66E-03
47GO:0016987: sigma factor activity2.74E-03
48GO:0004084: branched-chain-amino-acid transaminase activity2.74E-03
49GO:0004659: prenyltransferase activity2.74E-03
50GO:0001053: plastid sigma factor activity2.74E-03
51GO:0043621: protein self-association3.10E-03
52GO:0016846: carbon-sulfur lyase activity3.51E-03
53GO:0016773: phosphotransferase activity, alcohol group as acceptor3.51E-03
54GO:0018685: alkane 1-monooxygenase activity3.51E-03
55GO:0016208: AMP binding4.35E-03
56GO:0042578: phosphoric ester hydrolase activity4.35E-03
57GO:0008519: ammonium transmembrane transporter activity4.35E-03
58GO:0005524: ATP binding4.61E-03
59GO:0004674: protein serine/threonine kinase activity5.03E-03
60GO:0016832: aldehyde-lyase activity5.24E-03
61GO:0003730: mRNA 3'-UTR binding5.24E-03
62GO:0004144: diacylglycerol O-acyltransferase activity5.24E-03
63GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.24E-03
64GO:0004124: cysteine synthase activity5.24E-03
65GO:0016301: kinase activity5.98E-03
66GO:0000156: phosphorelay response regulator activity6.11E-03
67GO:0003872: 6-phosphofructokinase activity6.19E-03
68GO:0016791: phosphatase activity6.51E-03
69GO:0043022: ribosome binding7.20E-03
70GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity8.26E-03
71GO:0003747: translation release factor activity9.38E-03
72GO:0008236: serine-type peptidase activity9.66E-03
73GO:0004252: serine-type endopeptidase activity9.80E-03
74GO:0004713: protein tyrosine kinase activity1.18E-02
75GO:0008559: xenobiotic-transporting ATPase activity1.30E-02
76GO:0008017: microtubule binding1.37E-02
77GO:0003924: GTPase activity1.38E-02
78GO:0000049: tRNA binding1.44E-02
79GO:0000175: 3'-5'-exoribonuclease activity1.57E-02
80GO:0005315: inorganic phosphate transmembrane transporter activity1.57E-02
81GO:0004089: carbonate dehydratase activity1.57E-02
82GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.71E-02
83GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.01E-02
84GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.01E-02
85GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.01E-02
86GO:0005528: FK506 binding2.16E-02
87GO:0003714: transcription corepressor activity2.16E-02
88GO:0016788: hydrolase activity, acting on ester bonds2.31E-02
89GO:0015079: potassium ion transmembrane transporter activity2.32E-02
90GO:0004176: ATP-dependent peptidase activity2.48E-02
91GO:0003964: RNA-directed DNA polymerase activity2.48E-02
92GO:0019706: protein-cysteine S-palmitoyltransferase activity2.48E-02
93GO:0008408: 3'-5' exonuclease activity2.48E-02
94GO:0004672: protein kinase activity2.54E-02
95GO:0016760: cellulose synthase (UDP-forming) activity2.81E-02
96GO:0008514: organic anion transmembrane transporter activity2.99E-02
97GO:0005506: iron ion binding3.31E-02
98GO:0052689: carboxylic ester hydrolase activity3.34E-02
99GO:0008536: Ran GTPase binding3.53E-02
100GO:0010181: FMN binding3.71E-02
101GO:0003824: catalytic activity3.96E-02
102GO:0016762: xyloglucan:xyloglucosyl transferase activity4.09E-02
103GO:0051015: actin filament binding4.49E-02
104GO:0016759: cellulose synthase activity4.69E-02
105GO:0008565: protein transporter activity4.78E-02
106GO:0008237: metallopeptidase activity4.90E-02
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Gene type



Gene DE type