Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G62030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
2GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0006167: AMP biosynthetic process0.00E+00
5GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
6GO:0042407: cristae formation0.00E+00
7GO:0031116: positive regulation of microtubule polymerization0.00E+00
8GO:1905177: tracheary element differentiation0.00E+00
9GO:0018023: peptidyl-lysine trimethylation0.00E+00
10GO:0046040: IMP metabolic process0.00E+00
11GO:0051290: protein heterotetramerization0.00E+00
12GO:0070125: mitochondrial translational elongation0.00E+00
13GO:0006429: leucyl-tRNA aminoacylation0.00E+00
14GO:0019685: photosynthesis, dark reaction0.00E+00
15GO:1905421: regulation of plant organ morphogenesis0.00E+00
16GO:1901671: positive regulation of superoxide dismutase activity0.00E+00
17GO:0030155: regulation of cell adhesion0.00E+00
18GO:0051085: chaperone mediated protein folding requiring cofactor2.89E-05
19GO:0032543: mitochondrial translation8.25E-05
20GO:0045038: protein import into chloroplast thylakoid membrane8.25E-05
21GO:0042026: protein refolding1.64E-04
22GO:1901259: chloroplast rRNA processing1.64E-04
23GO:0006353: DNA-templated transcription, termination2.73E-04
24GO:0000105: histidine biosynthetic process2.73E-04
25GO:2000025: regulation of leaf formation2.80E-04
26GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process2.80E-04
27GO:0000476: maturation of 4.5S rRNA2.80E-04
28GO:0000967: rRNA 5'-end processing2.80E-04
29GO:0042547: cell wall modification involved in multidimensional cell growth2.80E-04
30GO:0042371: vitamin K biosynthetic process2.80E-04
31GO:1902458: positive regulation of stomatal opening2.80E-04
32GO:0006747: FAD biosynthetic process2.80E-04
33GO:0006419: alanyl-tRNA aminoacylation2.80E-04
34GO:0009657: plastid organization3.35E-04
35GO:0032544: plastid translation3.35E-04
36GO:0071482: cellular response to light stimulus3.35E-04
37GO:0009658: chloroplast organization5.00E-04
38GO:0006782: protoporphyrinogen IX biosynthetic process5.60E-04
39GO:0006432: phenylalanyl-tRNA aminoacylation6.14E-04
40GO:0018026: peptidyl-lysine monomethylation6.14E-04
41GO:0034755: iron ion transmembrane transport6.14E-04
42GO:0006423: cysteinyl-tRNA aminoacylation6.14E-04
43GO:0044208: 'de novo' AMP biosynthetic process6.14E-04
44GO:0009220: pyrimidine ribonucleotide biosynthetic process6.14E-04
45GO:0001682: tRNA 5'-leader removal6.14E-04
46GO:1903426: regulation of reactive oxygen species biosynthetic process6.14E-04
47GO:0034470: ncRNA processing6.14E-04
48GO:0010198: synergid death6.14E-04
49GO:0006352: DNA-templated transcription, initiation6.45E-04
50GO:0006415: translational termination6.45E-04
51GO:0015995: chlorophyll biosynthetic process6.76E-04
52GO:0009409: response to cold7.77E-04
53GO:0006094: gluconeogenesis8.37E-04
54GO:0009793: embryo development ending in seed dormancy9.59E-04
55GO:0010623: programmed cell death involved in cell development9.96E-04
56GO:0015940: pantothenate biosynthetic process9.96E-04
57GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition9.96E-04
58GO:0001578: microtubule bundle formation9.96E-04
59GO:0005977: glycogen metabolic process9.96E-04
60GO:0033591: response to L-ascorbic acid9.96E-04
61GO:0048281: inflorescence morphogenesis9.96E-04
62GO:0045087: innate immune response1.03E-03
63GO:0090351: seedling development1.05E-03
64GO:0006418: tRNA aminoacylation for protein translation1.42E-03
65GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.42E-03
66GO:0006424: glutamyl-tRNA aminoacylation1.42E-03
67GO:0006164: purine nucleotide biosynthetic process1.42E-03
68GO:0010148: transpiration1.42E-03
69GO:0043572: plastid fission1.42E-03
70GO:0016556: mRNA modification1.42E-03
71GO:0006986: response to unfolded protein1.42E-03
72GO:2001141: regulation of RNA biosynthetic process1.42E-03
73GO:0009102: biotin biosynthetic process1.42E-03
74GO:0009152: purine ribonucleotide biosynthetic process1.42E-03
75GO:0010601: positive regulation of auxin biosynthetic process1.42E-03
76GO:0010239: chloroplast mRNA processing1.42E-03
77GO:0061077: chaperone-mediated protein folding1.56E-03
78GO:0006730: one-carbon metabolic process1.70E-03
79GO:0007005: mitochondrion organization1.70E-03
80GO:0010508: positive regulation of autophagy1.91E-03
81GO:0007020: microtubule nucleation1.91E-03
82GO:0071483: cellular response to blue light1.91E-03
83GO:0044205: 'de novo' UMP biosynthetic process1.91E-03
84GO:0010021: amylopectin biosynthetic process1.91E-03
85GO:0010109: regulation of photosynthesis1.91E-03
86GO:0051781: positive regulation of cell division1.91E-03
87GO:0051322: anaphase1.91E-03
88GO:0009765: photosynthesis, light harvesting1.91E-03
89GO:0046785: microtubule polymerization2.43E-03
90GO:0016120: carotene biosynthetic process2.43E-03
91GO:0010236: plastoquinone biosynthetic process2.43E-03
92GO:0016123: xanthophyll biosynthetic process2.43E-03
93GO:0006465: signal peptide processing2.43E-03
94GO:0019252: starch biosynthetic process2.93E-03
95GO:0042793: transcription from plastid promoter3.00E-03
96GO:0032973: amino acid export3.00E-03
97GO:0050665: hydrogen peroxide biosynthetic process3.00E-03
98GO:0046686: response to cadmium ion3.35E-03
99GO:0042372: phylloquinone biosynthetic process3.62E-03
100GO:0006458: 'de novo' protein folding3.62E-03
101GO:0009854: oxidative photosynthetic carbon pathway3.62E-03
102GO:0009955: adaxial/abaxial pattern specification3.62E-03
103GO:0015979: photosynthesis4.11E-03
104GO:0048437: floral organ development4.26E-03
105GO:0070370: cellular heat acclimation4.26E-03
106GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.26E-03
107GO:0010444: guard mother cell differentiation4.26E-03
108GO:0006400: tRNA modification4.26E-03
109GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process4.26E-03
110GO:0015693: magnesium ion transport4.26E-03
111GO:0010103: stomatal complex morphogenesis4.26E-03
112GO:0048528: post-embryonic root development4.26E-03
113GO:0009772: photosynthetic electron transport in photosystem II4.26E-03
114GO:0043090: amino acid import4.26E-03
115GO:0010027: thylakoid membrane organization4.53E-03
116GO:0006605: protein targeting4.95E-03
117GO:2000070: regulation of response to water deprivation4.95E-03
118GO:0009231: riboflavin biosynthetic process4.95E-03
119GO:0052543: callose deposition in cell wall4.95E-03
120GO:0009627: systemic acquired resistance5.06E-03
121GO:0009790: embryo development5.25E-03
122GO:0006508: proteolysis5.44E-03
123GO:0001558: regulation of cell growth5.67E-03
124GO:0010204: defense response signaling pathway, resistance gene-independent5.67E-03
125GO:0006098: pentose-phosphate shunt6.43E-03
126GO:0080144: amino acid homeostasis6.43E-03
127GO:0006783: heme biosynthetic process6.43E-03
128GO:1900865: chloroplast RNA modification7.22E-03
129GO:0005982: starch metabolic process7.22E-03
130GO:0043067: regulation of programmed cell death7.22E-03
131GO:0006779: porphyrin-containing compound biosynthetic process7.22E-03
132GO:0045036: protein targeting to chloroplast8.04E-03
133GO:0006949: syncytium formation8.04E-03
134GO:0009073: aromatic amino acid family biosynthetic process8.90E-03
135GO:0006879: cellular iron ion homeostasis8.90E-03
136GO:0009684: indoleacetic acid biosynthetic process8.90E-03
137GO:0010015: root morphogenesis8.90E-03
138GO:0005975: carbohydrate metabolic process9.56E-03
139GO:0005983: starch catabolic process9.79E-03
140GO:0045037: protein import into chloroplast stroma9.79E-03
141GO:2000012: regulation of auxin polar transport1.07E-02
142GO:0050826: response to freezing1.07E-02
143GO:0010020: chloroplast fission1.17E-02
144GO:0009664: plant-type cell wall organization1.22E-02
145GO:0071732: cellular response to nitric oxide1.26E-02
146GO:0006833: water transport1.37E-02
147GO:0000162: tryptophan biosynthetic process1.37E-02
148GO:0009944: polarity specification of adaxial/abaxial axis1.47E-02
149GO:0007010: cytoskeleton organization1.47E-02
150GO:0009116: nucleoside metabolic process1.47E-02
151GO:0006096: glycolytic process1.55E-02
152GO:0043622: cortical microtubule organization1.58E-02
153GO:0051302: regulation of cell division1.58E-02
154GO:0048511: rhythmic process1.68E-02
155GO:0009814: defense response, incompatible interaction1.80E-02
156GO:0035428: hexose transmembrane transport1.80E-02
157GO:0031348: negative regulation of defense response1.80E-02
158GO:0019748: secondary metabolic process1.80E-02
159GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.91E-02
160GO:0071369: cellular response to ethylene stimulus1.91E-02
161GO:0001944: vasculature development1.91E-02
162GO:0009306: protein secretion2.03E-02
163GO:0010089: xylem development2.03E-02
164GO:0055085: transmembrane transport2.07E-02
165GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.15E-02
166GO:0016117: carotenoid biosynthetic process2.15E-02
167GO:0008033: tRNA processing2.27E-02
168GO:0034220: ion transmembrane transport2.27E-02
169GO:0048653: anther development2.27E-02
170GO:0010197: polar nucleus fusion2.39E-02
171GO:0046323: glucose import2.39E-02
172GO:0042752: regulation of circadian rhythm2.52E-02
173GO:0009646: response to absence of light2.52E-02
174GO:0006397: mRNA processing2.57E-02
175GO:0006810: transport2.61E-02
176GO:0009556: microsporogenesis2.65E-02
177GO:0071554: cell wall organization or biogenesis2.78E-02
178GO:0016032: viral process2.91E-02
179GO:0006633: fatty acid biosynthetic process2.94E-02
180GO:0071281: cellular response to iron ion3.05E-02
181GO:0010090: trichome morphogenesis3.05E-02
182GO:1901657: glycosyl compound metabolic process3.05E-02
183GO:0009828: plant-type cell wall loosening3.19E-02
184GO:0045490: pectin catabolic process3.22E-02
185GO:0009451: RNA modification3.30E-02
186GO:0000910: cytokinesis3.47E-02
187GO:0001666: response to hypoxia3.62E-02
188GO:0009911: positive regulation of flower development3.62E-02
189GO:0007166: cell surface receptor signaling pathway3.68E-02
190GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.76E-02
191GO:0008380: RNA splicing3.84E-02
192GO:0048481: plant ovule development4.37E-02
193GO:0008219: cell death4.37E-02
194GO:0009416: response to light stimulus4.94E-02
RankGO TermAdjusted P value
1GO:0010303: limit dextrinase activity0.00E+00
2GO:0043864: indoleacetamide hydrolase activity0.00E+00
3GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
6GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
7GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
8GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0051060: pullulanase activity0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
14GO:0015267: channel activity0.00E+00
15GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
16GO:0005048: signal sequence binding0.00E+00
17GO:0004019: adenylosuccinate synthase activity0.00E+00
18GO:0004076: biotin synthase activity0.00E+00
19GO:0003937: IMP cyclohydrolase activity0.00E+00
20GO:0004326: tetrahydrofolylpolyglutamate synthase activity3.59E-06
21GO:0002161: aminoacyl-tRNA editing activity1.29E-05
22GO:0016149: translation release factor activity, codon specific2.89E-05
23GO:0016851: magnesium chelatase activity2.89E-05
24GO:0000049: tRNA binding3.77E-05
25GO:0008237: metallopeptidase activity3.77E-05
26GO:0016987: sigma factor activity5.21E-05
27GO:0001053: plastid sigma factor activity5.21E-05
28GO:0016773: phosphotransferase activity, alcohol group as acceptor8.25E-05
29GO:0004556: alpha-amylase activity1.20E-04
30GO:0004176: ATP-dependent peptidase activity1.26E-04
31GO:0005525: GTP binding2.12E-04
32GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.80E-04
33GO:0004856: xylulokinase activity2.80E-04
34GO:0004813: alanine-tRNA ligase activity2.80E-04
35GO:0004853: uroporphyrinogen decarboxylase activity2.80E-04
36GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.80E-04
37GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.80E-04
38GO:0004347: glucose-6-phosphate isomerase activity2.80E-04
39GO:0005227: calcium activated cation channel activity2.80E-04
40GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity2.80E-04
41GO:0003747: translation release factor activity4.05E-04
42GO:0003919: FMN adenylyltransferase activity6.14E-04
43GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.14E-04
44GO:0019156: isoamylase activity6.14E-04
45GO:0004826: phenylalanine-tRNA ligase activity6.14E-04
46GO:0009977: proton motive force dependent protein transmembrane transporter activity6.14E-04
47GO:0004817: cysteine-tRNA ligase activity6.14E-04
48GO:0044183: protein binding involved in protein folding6.45E-04
49GO:0004222: metalloendopeptidase activity8.70E-04
50GO:0008266: poly(U) RNA binding9.39E-04
51GO:0015462: ATPase-coupled protein transmembrane transporter activity9.96E-04
52GO:0005528: FK506 binding1.29E-03
53GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.42E-03
54GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.42E-03
55GO:0001872: (1->3)-beta-D-glucan binding1.42E-03
56GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.42E-03
57GO:0019201: nucleotide kinase activity1.42E-03
58GO:0003924: GTPase activity1.44E-03
59GO:0003723: RNA binding1.61E-03
60GO:0030570: pectate lyase activity1.86E-03
61GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.91E-03
62GO:0019199: transmembrane receptor protein kinase activity1.91E-03
63GO:0042277: peptide binding1.91E-03
64GO:0008891: glycolate oxidase activity1.91E-03
65GO:0004659: prenyltransferase activity1.91E-03
66GO:0016279: protein-lysine N-methyltransferase activity1.91E-03
67GO:0004045: aminoacyl-tRNA hydrolase activity1.91E-03
68GO:0004812: aminoacyl-tRNA ligase activity2.19E-03
69GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.43E-03
70GO:0004040: amidase activity2.43E-03
71GO:0005524: ATP binding2.69E-03
72GO:0004629: phospholipase C activity3.00E-03
73GO:0004332: fructose-bisphosphate aldolase activity3.00E-03
74GO:0004526: ribonuclease P activity3.00E-03
75GO:0003729: mRNA binding3.04E-03
76GO:0051082: unfolded protein binding3.24E-03
77GO:0004017: adenylate kinase activity3.62E-03
78GO:0004435: phosphatidylinositol phospholipase C activity3.62E-03
79GO:0016597: amino acid binding4.28E-03
80GO:0005337: nucleoside transmembrane transporter activity4.95E-03
81GO:0008312: 7S RNA binding4.95E-03
82GO:0005381: iron ion transmembrane transporter activity7.22E-03
83GO:0003746: translation elongation factor activity7.49E-03
84GO:0047372: acylglycerol lipase activity8.90E-03
85GO:0004185: serine-type carboxypeptidase activity9.67E-03
86GO:0004565: beta-galactosidase activity1.07E-02
87GO:0015095: magnesium ion transmembrane transporter activity1.07E-02
88GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.13E-02
89GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.31E-02
90GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.37E-02
91GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.37E-02
92GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.37E-02
93GO:0051087: chaperone binding1.58E-02
94GO:0022891: substrate-specific transmembrane transporter activity1.91E-02
95GO:0019843: rRNA binding2.34E-02
96GO:0005355: glucose transmembrane transporter activity2.52E-02
97GO:0010181: FMN binding2.52E-02
98GO:0016829: lyase activity2.53E-02
99GO:0004519: endonuclease activity2.71E-02
100GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.01E-02
101GO:0008483: transaminase activity3.33E-02
102GO:0008017: microtubule binding3.37E-02
103GO:0016413: O-acetyltransferase activity3.47E-02
104GO:0015250: water channel activity3.62E-02
105GO:0102483: scopolin beta-glucosidase activity4.06E-02
106GO:0030247: polysaccharide binding4.06E-02
107GO:0016887: ATPase activity4.19E-02
108GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.37E-02
109GO:0015238: drug transmembrane transporter activity4.52E-02
110GO:0008168: methyltransferase activity4.78E-02
111GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.84E-02
112GO:0030145: manganese ion binding4.84E-02
113GO:0000287: magnesium ion binding4.87E-02
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Gene type



Gene DE type