co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G60590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
2	GO:1901698: response to nitrogen compound	0.00E+00
3	GO:0009606: tropism	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
6	GO:0097164: ammonium ion metabolic process	0.00E+00
7	GO:0045184: establishment of protein localization	0.00E+00
8	GO:0015843: methylammonium transport	0.00E+00
9	GO:0031222: arabinan catabolic process	0.00E+00
10	GO:0070979: protein K11-linked ubiquitination	0.00E+00
11	GO:0046620: regulation of organ growth	9.05E-09
12	GO:0009734: auxin-activated signaling pathway	1.09E-08
13	GO:0009926: auxin polar transport	1.48E-06
14	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.41E-05
15	GO:0007389: pattern specification process	5.74E-05
16	GO:0046739: transport of virus in multicellular host	1.05E-04
17	GO:0009733: response to auxin	1.07E-04
18	GO:2000038: regulation of stomatal complex development	1.80E-04
19	GO:0010252: auxin homeostasis	2.48E-04
20	GO:0009828: plant-type cell wall loosening	2.48E-04
21	GO:0032876: negative regulation of DNA endoreduplication	2.73E-04
22	GO:0042793: transcription from plastid promoter	3.83E-04
23	GO:0010067: procambium histogenesis	5.09E-04
24	GO:0000160: phosphorelay signal transduction system	5.51E-04
25	GO:0034757: negative regulation of iron ion transport	5.87E-04
26	GO:0048016: inositol phosphate-mediated signaling	5.87E-04
27	GO:0042659: regulation of cell fate specification	5.87E-04
28	GO:0070509: calcium ion import	5.87E-04
29	GO:0090558: plant epidermis development	5.87E-04
30	GO:0010480: microsporocyte differentiation	5.87E-04
31	GO:0035987: endodermal cell differentiation	5.87E-04
32	GO:0006436: tryptophanyl-tRNA aminoacylation	5.87E-04
33	GO:0000066: mitochondrial ornithine transport	5.87E-04
34	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.04E-04
35	GO:0010497: plasmodesmata-mediated intercellular transport	9.85E-04
36	GO:0000373: Group II intron splicing	1.18E-03
37	GO:2000123: positive regulation of stomatal complex development	1.26E-03
38	GO:0010569: regulation of double-strand break repair via homologous recombination	1.26E-03
39	GO:0070981: L-asparagine biosynthetic process	1.26E-03
40	GO:0010271: regulation of chlorophyll catabolic process	1.26E-03
41	GO:0018026: peptidyl-lysine monomethylation	1.26E-03
42	GO:0071497: cellular response to freezing	1.26E-03
43	GO:0009662: etioplast organization	1.26E-03
44	GO:1900033: negative regulation of trichome patterning	1.26E-03
45	GO:0080009: mRNA methylation	1.26E-03
46	GO:0009786: regulation of asymmetric cell division	1.26E-03
47	GO:0006529: asparagine biosynthetic process	1.26E-03
48	GO:0006468: protein phosphorylation	1.45E-03
49	GO:0040008: regulation of growth	1.51E-03
50	GO:0009664: plant-type cell wall organization	1.53E-03
51	GO:0006949: syncytium formation	1.62E-03
52	GO:0009736: cytokinin-activated signaling pathway	1.71E-03
53	GO:0009739: response to gibberellin	2.00E-03
54	GO:0090708: specification of plant organ axis polarity	2.07E-03
55	GO:0080117: secondary growth	2.07E-03
56	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.07E-03
57	GO:0071705: nitrogen compound transport	2.07E-03
58	GO:0001578: microtubule bundle formation	2.07E-03
59	GO:0009767: photosynthetic electron transport chain	2.45E-03
60	GO:0030071: regulation of mitotic metaphase/anaphase transition	3.01E-03
61	GO:0051639: actin filament network formation	3.01E-03
62	GO:0010239: chloroplast mRNA processing	3.01E-03
63	GO:0044211: CTP salvage	3.01E-03
64	GO:0019048: modulation by virus of host morphology or physiology	3.01E-03
65	GO:0009800: cinnamic acid biosynthetic process	3.01E-03
66	GO:0015696: ammonium transport	3.01E-03
67	GO:2000904: regulation of starch metabolic process	3.01E-03
68	GO:0031048: chromatin silencing by small RNA	3.01E-03
69	GO:0043572: plastid fission	3.01E-03
70	GO:1902476: chloride transmembrane transport	3.01E-03
71	GO:0051513: regulation of monopolar cell growth	3.01E-03
72	GO:0007231: osmosensory signaling pathway	3.01E-03
73	GO:0070588: calcium ion transmembrane transport	3.11E-03
74	GO:0009416: response to light stimulus	3.16E-03
75	GO:0009826: unidimensional cell growth	3.32E-03
76	GO:0009658: chloroplast organization	3.56E-03
77	GO:0005992: trehalose biosynthetic process	3.85E-03
78	GO:0051764: actin crosslink formation	4.06E-03
79	GO:0051322: anaphase	4.06E-03
80	GO:0071249: cellular response to nitrate	4.06E-03
81	GO:0072488: ammonium transmembrane transport	4.06E-03
82	GO:0030104: water homeostasis	4.06E-03
83	GO:0033500: carbohydrate homeostasis	4.06E-03
84	GO:0046656: folic acid biosynthetic process	4.06E-03
85	GO:0051567: histone H3-K9 methylation	4.06E-03
86	GO:0044206: UMP salvage	4.06E-03
87	GO:1901141: regulation of lignin biosynthetic process	4.06E-03
88	GO:0006479: protein methylation	4.06E-03
89	GO:0048629: trichome patterning	4.06E-03
90	GO:0006306: DNA methylation	4.68E-03
91	GO:0016998: cell wall macromolecule catabolic process	4.68E-03
92	GO:0010438: cellular response to sulfur starvation	5.21E-03
93	GO:0032957: inositol trisphosphate metabolic process	5.21E-03
94	GO:0030308: negative regulation of cell growth	5.21E-03
95	GO:0010375: stomatal complex patterning	5.21E-03
96	GO:0006544: glycine metabolic process	5.21E-03
97	GO:1902183: regulation of shoot apical meristem development	5.21E-03
98	GO:0016123: xanthophyll biosynthetic process	5.21E-03
99	GO:0010082: regulation of root meristem growth	5.60E-03
100	GO:0016554: cytidine to uridine editing	6.46E-03
101	GO:0006655: phosphatidylglycerol biosynthetic process	6.46E-03
102	GO:0048831: regulation of shoot system development	6.46E-03
103	GO:0010315: auxin efflux	6.46E-03
104	GO:0006559: L-phenylalanine catabolic process	6.46E-03
105	GO:0006206: pyrimidine nucleobase metabolic process	6.46E-03
106	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.46E-03
107	GO:0016458: gene silencing	6.46E-03
108	GO:0046855: inositol phosphate dephosphorylation	6.46E-03
109	GO:0006563: L-serine metabolic process	6.46E-03
110	GO:0010405: arabinogalactan protein metabolic process	6.46E-03
111	GO:0010087: phloem or xylem histogenesis	7.14E-03
112	GO:0006342: chromatin silencing	7.71E-03
113	GO:2000067: regulation of root morphogenesis	7.81E-03
114	GO:0009942: longitudinal axis specification	7.81E-03
115	GO:0048509: regulation of meristem development	7.81E-03
116	GO:0046654: tetrahydrofolate biosynthetic process	7.81E-03
117	GO:0030488: tRNA methylation	7.81E-03
118	GO:2000037: regulation of stomatal complex patterning	7.81E-03
119	GO:0048544: recognition of pollen	8.29E-03
120	GO:0006955: immune response	9.25E-03
121	GO:0048528: post-embryonic root development	9.25E-03
122	GO:0006821: chloride transport	9.25E-03
123	GO:0048437: floral organ development	9.25E-03
124	GO:0009396: folic acid-containing compound biosynthetic process	9.25E-03
125	GO:0010103: stomatal complex morphogenesis	9.25E-03
126	GO:0009610: response to symbiotic fungus	9.25E-03
127	GO:0010583: response to cyclopentenone	1.02E-02
128	GO:0032502: developmental process	1.02E-02
129	GO:0010439: regulation of glucosinolate biosynthetic process	1.08E-02
130	GO:0001522: pseudouridine synthesis	1.08E-02
131	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.08E-02
132	GO:0042255: ribosome assembly	1.08E-02
133	GO:0032875: regulation of DNA endoreduplication	1.08E-02
134	GO:0048766: root hair initiation	1.08E-02
135	GO:0055075: potassium ion homeostasis	1.08E-02
136	GO:0048364: root development	1.11E-02
137	GO:0009827: plant-type cell wall modification	1.24E-02
138	GO:0048574: long-day photoperiodism, flowering	1.24E-02
139	GO:0051607: defense response to virus	1.31E-02
140	GO:0010027: thylakoid membrane organization	1.39E-02
141	GO:0009051: pentose-phosphate shunt, oxidative branch	1.41E-02
142	GO:2000024: regulation of leaf development	1.41E-02
143	GO:0000902: cell morphogenesis	1.41E-02
144	GO:0009742: brassinosteroid mediated signaling pathway	1.44E-02
145	GO:0009638: phototropism	1.59E-02
146	GO:0035999: tetrahydrofolate interconversion	1.59E-02
147	GO:0042761: very long-chain fatty acid biosynthetic process	1.59E-02
148	GO:2000280: regulation of root development	1.59E-02
149	GO:0006349: regulation of gene expression by genetic imprinting	1.59E-02
150	GO:1900865: chloroplast RNA modification	1.59E-02
151	GO:0031425: chloroplast RNA processing	1.59E-02
152	GO:0010411: xyloglucan metabolic process	1.64E-02
153	GO:0006357: regulation of transcription from RNA polymerase II promoter	1.67E-02
154	GO:0030154: cell differentiation	1.73E-02
155	GO:0010048: vernalization response	1.77E-02
156	GO:0030422: production of siRNA involved in RNA interference	1.77E-02
157	GO:0048829: root cap development	1.77E-02
158	GO:0009641: shade avoidance	1.77E-02
159	GO:0048481: plant ovule development	1.82E-02
160	GO:0080167: response to karrikin	1.83E-02
161	GO:0046856: phosphatidylinositol dephosphorylation	1.96E-02
162	GO:0010015: root morphogenesis	1.96E-02
163	GO:0006816: calcium ion transport	1.96E-02
164	GO:0009682: induced systemic resistance	1.96E-02
165	GO:0048229: gametophyte development	1.96E-02
166	GO:0008361: regulation of cell size	2.16E-02
167	GO:0015706: nitrate transport	2.16E-02
168	GO:0016024: CDP-diacylglycerol biosynthetic process	2.16E-02
169	GO:0010588: cotyledon vascular tissue pattern formation	2.37E-02
170	GO:0010102: lateral root morphogenesis	2.37E-02
171	GO:0009785: blue light signaling pathway	2.37E-02
172	GO:0006006: glucose metabolic process	2.37E-02
173	GO:0009691: cytokinin biosynthetic process	2.37E-02
174	GO:0010075: regulation of meristem growth	2.37E-02
175	GO:0006541: glutamine metabolic process	2.58E-02
176	GO:0010207: photosystem II assembly	2.58E-02
177	GO:0010020: chloroplast fission	2.58E-02
178	GO:0010223: secondary shoot formation	2.58E-02
179	GO:0009934: regulation of meristem structural organization	2.58E-02
180	GO:0007623: circadian rhythm	2.68E-02
181	GO:0009451: RNA modification	2.76E-02
182	GO:0010167: response to nitrate	2.80E-02
183	GO:0090351: seedling development	2.80E-02
184	GO:0010114: response to red light	2.97E-02
185	GO:0006071: glycerol metabolic process	3.03E-02
186	GO:0006833: water transport	3.03E-02
187	GO:0006351: transcription, DNA-templated	3.09E-02
188	GO:0042546: cell wall biogenesis	3.09E-02
189	GO:0009751: response to salicylic acid	3.18E-02
190	GO:0009944: polarity specification of adaxial/abaxial axis	3.26E-02
191	GO:0000027: ribosomal large subunit assembly	3.26E-02
192	GO:0080147: root hair cell development	3.26E-02
193	GO:0051017: actin filament bundle assembly	3.26E-02
194	GO:0008380: RNA splicing	3.34E-02
195	GO:0051302: regulation of cell division	3.50E-02
196	GO:0006418: tRNA aminoacylation for protein translation	3.50E-02
197	GO:0010073: meristem maintenance	3.50E-02
198	GO:0006825: copper ion transport	3.50E-02
199	GO:0006730: one-carbon metabolic process	3.99E-02
200	GO:0031348: negative regulation of defense response	3.99E-02
201	GO:0019748: secondary metabolic process	3.99E-02
202	GO:0071215: cellular response to abscisic acid stimulus	4.25E-02
203	GO:0001944: vasculature development	4.25E-02
204	GO:0009625: response to insect	4.25E-02
205	GO:0006284: base-excision repair	4.51E-02
206	GO:0010089: xylem development	4.51E-02
207	GO:0070417: cellular response to cold	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0004056: argininosuccinate lyase activity	0.00E+00
2	GO:0009672: auxin:proton symporter activity	1.01E-04
3	GO:0010329: auxin efflux transmembrane transporter activity	2.35E-04
4	GO:0004674: protein serine/threonine kinase activity	5.55E-04
5	GO:0042834: peptidoglycan binding	5.87E-04
6	GO:0046030: inositol trisphosphate phosphatase activity	5.87E-04
7	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	5.87E-04
8	GO:0004156: dihydropteroate synthase activity	5.87E-04
9	GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	5.87E-04
10	GO:0016274: protein-arginine N-methyltransferase activity	5.87E-04
11	GO:0005290: L-histidine transmembrane transporter activity	5.87E-04
12	GO:0004008: copper-exporting ATPase activity	5.87E-04
13	GO:0004071: aspartate-ammonia ligase activity	5.87E-04
14	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	5.87E-04
15	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	5.87E-04
16	GO:0052381: tRNA dimethylallyltransferase activity	5.87E-04
17	GO:0004830: tryptophan-tRNA ligase activity	5.87E-04
18	GO:0004016: adenylate cyclase activity	5.87E-04
19	GO:0003727: single-stranded RNA binding	7.84E-04
20	GO:0008805: carbon-monoxide oxygenase activity	1.26E-03
21	GO:0000064: L-ornithine transmembrane transporter activity	1.26E-03
22	GO:0015929: hexosaminidase activity	1.26E-03
23	GO:0004563: beta-N-acetylhexosaminidase activity	1.26E-03
24	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.26E-03
25	GO:0009884: cytokinin receptor activity	1.26E-03
26	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.26E-03
27	GO:0000156: phosphorelay response regulator activity	1.62E-03
28	GO:0004805: trehalose-phosphatase activity	1.62E-03
29	GO:0070330: aromatase activity	2.07E-03
30	GO:0017150: tRNA dihydrouridine synthase activity	2.07E-03
31	GO:0045548: phenylalanine ammonia-lyase activity	2.07E-03
32	GO:0016805: dipeptidase activity	2.07E-03
33	GO:0005034: osmosensor activity	2.07E-03
34	GO:0005262: calcium channel activity	2.45E-03
35	GO:0001872: (1->3)-beta-D-glucan binding	3.01E-03
36	GO:0015189: L-lysine transmembrane transporter activity	3.01E-03
37	GO:0015181: arginine transmembrane transporter activity	3.01E-03
38	GO:0035197: siRNA binding	3.01E-03
39	GO:0004345: glucose-6-phosphate dehydrogenase activity	4.06E-03
40	GO:0019199: transmembrane receptor protein kinase activity	4.06E-03
41	GO:0005253: anion channel activity	4.06E-03
42	GO:0046556: alpha-L-arabinofuranosidase activity	4.06E-03
43	GO:0016279: protein-lysine N-methyltransferase activity	4.06E-03
44	GO:0004845: uracil phosphoribosyltransferase activity	4.06E-03
45	GO:0016301: kinase activity	4.31E-03
46	GO:0003735: structural constituent of ribosome	4.81E-03
47	GO:0004372: glycine hydroxymethyltransferase activity	5.21E-03
48	GO:0018685: alkane 1-monooxygenase activity	5.21E-03
49	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.21E-03
50	GO:0008725: DNA-3-methyladenine glycosylase activity	5.21E-03
51	GO:0004672: protein kinase activity	5.38E-03
52	GO:0004605: phosphatidate cytidylyltransferase activity	6.46E-03
53	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.46E-03
54	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	6.46E-03
55	GO:0008519: ammonium transmembrane transporter activity	6.46E-03
56	GO:0005247: voltage-gated chloride channel activity	6.46E-03
57	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	7.12E-03
58	GO:0008195: phosphatidate phosphatase activity	7.81E-03
59	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.81E-03
60	GO:0004849: uridine kinase activity	7.81E-03
61	GO:0016832: aldehyde-lyase activity	7.81E-03
62	GO:0004656: procollagen-proline 4-dioxygenase activity	7.81E-03
63	GO:0019900: kinase binding	7.81E-03
64	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	8.59E-03
65	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.54E-03
66	GO:0004519: endonuclease activity	1.19E-02
67	GO:0005375: copper ion transmembrane transporter activity	1.24E-02
68	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.41E-02
69	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.63E-02
70	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.64E-02
71	GO:0004673: protein histidine kinase activity	1.77E-02
72	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.96E-02
73	GO:0004521: endoribonuclease activity	2.16E-02
74	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	2.16E-02
75	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.31E-02
76	GO:0009982: pseudouridine synthase activity	2.37E-02
77	GO:0004022: alcohol dehydrogenase (NAD) activity	2.37E-02
78	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.37E-02
79	GO:0004089: carbonate dehydratase activity	2.37E-02
80	GO:0031072: heat shock protein binding	2.37E-02
81	GO:0000155: phosphorelay sensor kinase activity	2.37E-02
82	GO:0003723: RNA binding	2.43E-02
83	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.52E-02
84	GO:0004871: signal transducer activity	2.56E-02
85	GO:0042803: protein homodimerization activity	2.56E-02
86	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.58E-02
87	GO:0031418: L-ascorbic acid binding	3.26E-02
88	GO:0043424: protein histidine kinase binding	3.50E-02
89	GO:0005345: purine nucleobase transmembrane transporter activity	3.50E-02
90	GO:0035251: UDP-glucosyltransferase activity	3.74E-02
91	GO:0004176: ATP-dependent peptidase activity	3.74E-02
92	GO:0033612: receptor serine/threonine kinase binding	3.74E-02
93	GO:0008408: 3'-5' exonuclease activity	3.74E-02
94	GO:0030570: pectate lyase activity	4.25E-02
95	GO:0022891: substrate-specific transmembrane transporter activity	4.25E-02
96	GO:0005215: transporter activity	4.35E-02
97	GO:0016788: hydrolase activity, acting on ester bonds	4.70E-02
98	GO:0018024: histone-lysine N-methyltransferase activity	4.77E-02
99	GO:0004812: aminoacyl-tRNA ligase activity	4.77E-02