GO Enrichment Analysis of Co-expressed Genes with
AT1G60160
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 4 | GO:0010422: regulation of brassinosteroid biosynthetic process | 0.00E+00 |
| 5 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 6 | GO:0009157: deoxyribonucleoside monophosphate biosynthetic process | 0.00E+00 |
| 7 | GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 8 | GO:0000455: enzyme-directed rRNA pseudouridine synthesis | 0.00E+00 |
| 9 | GO:0031129: inductive cell-cell signaling | 0.00E+00 |
| 10 | GO:0031116: positive regulation of microtubule polymerization | 0.00E+00 |
| 11 | GO:0010068: protoderm histogenesis | 0.00E+00 |
| 12 | GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 13 | GO:0009082: branched-chain amino acid biosynthetic process | 1.15E-04 |
| 14 | GO:0009099: valine biosynthetic process | 1.15E-04 |
| 15 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.94E-04 |
| 16 | GO:2000021: regulation of ion homeostasis | 2.22E-04 |
| 17 | GO:0006264: mitochondrial DNA replication | 2.22E-04 |
| 18 | GO:0033259: plastid DNA replication | 2.22E-04 |
| 19 | GO:0006177: GMP biosynthetic process | 2.22E-04 |
| 20 | GO:0010450: inflorescence meristem growth | 2.22E-04 |
| 21 | GO:0051171: regulation of nitrogen compound metabolic process | 2.22E-04 |
| 22 | GO:1902265: abscisic acid homeostasis | 2.22E-04 |
| 23 | GO:0010482: regulation of epidermal cell division | 2.22E-04 |
| 24 | GO:0043266: regulation of potassium ion transport | 2.22E-04 |
| 25 | GO:0006659: phosphatidylserine biosynthetic process | 2.22E-04 |
| 26 | GO:0009097: isoleucine biosynthetic process | 2.40E-04 |
| 27 | GO:0009684: indoleacetic acid biosynthetic process | 4.69E-04 |
| 28 | GO:0015804: neutral amino acid transport | 4.95E-04 |
| 29 | GO:2000039: regulation of trichome morphogenesis | 4.95E-04 |
| 30 | GO:1900871: chloroplast mRNA modification | 4.95E-04 |
| 31 | GO:0007154: cell communication | 4.95E-04 |
| 32 | GO:0042814: monopolar cell growth | 4.95E-04 |
| 33 | GO:0016050: vesicle organization | 8.05E-04 |
| 34 | GO:0045165: cell fate commitment | 8.05E-04 |
| 35 | GO:0031022: nuclear migration along microfilament | 8.05E-04 |
| 36 | GO:0051127: positive regulation of actin nucleation | 8.05E-04 |
| 37 | GO:0070475: rRNA base methylation | 8.05E-04 |
| 38 | GO:0045604: regulation of epidermal cell differentiation | 8.05E-04 |
| 39 | GO:0051604: protein maturation | 8.05E-04 |
| 40 | GO:0001578: microtubule bundle formation | 8.05E-04 |
| 41 | GO:0045493: xylan catabolic process | 8.05E-04 |
| 42 | GO:0010187: negative regulation of seed germination | 9.41E-04 |
| 43 | GO:0009067: aspartate family amino acid biosynthetic process | 1.15E-03 |
| 44 | GO:0006166: purine ribonucleoside salvage | 1.15E-03 |
| 45 | GO:0051639: actin filament network formation | 1.15E-03 |
| 46 | GO:0048645: animal organ formation | 1.15E-03 |
| 47 | GO:0006164: purine nucleotide biosynthetic process | 1.15E-03 |
| 48 | GO:0010255: glucose mediated signaling pathway | 1.15E-03 |
| 49 | GO:0048530: fruit morphogenesis | 1.15E-03 |
| 50 | GO:0006168: adenine salvage | 1.15E-03 |
| 51 | GO:0009165: nucleotide biosynthetic process | 1.53E-03 |
| 52 | GO:0051764: actin crosslink formation | 1.53E-03 |
| 53 | GO:0051322: anaphase | 1.53E-03 |
| 54 | GO:0015846: polyamine transport | 1.53E-03 |
| 55 | GO:0007020: microtubule nucleation | 1.53E-03 |
| 56 | GO:0006021: inositol biosynthetic process | 1.53E-03 |
| 57 | GO:0009902: chloroplast relocation | 1.53E-03 |
| 58 | GO:0048367: shoot system development | 1.75E-03 |
| 59 | GO:1902183: regulation of shoot apical meristem development | 1.95E-03 |
| 60 | GO:0016123: xanthophyll biosynthetic process | 1.95E-03 |
| 61 | GO:0044209: AMP salvage | 1.95E-03 |
| 62 | GO:0010158: abaxial cell fate specification | 1.95E-03 |
| 63 | GO:0016131: brassinosteroid metabolic process | 1.95E-03 |
| 64 | GO:0046785: microtubule polymerization | 1.95E-03 |
| 65 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.95E-03 |
| 66 | GO:0009740: gibberellic acid mediated signaling pathway | 1.97E-03 |
| 67 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 2.40E-03 |
| 68 | GO:0009959: negative gravitropism | 2.40E-03 |
| 69 | GO:0006655: phosphatidylglycerol biosynthetic process | 2.40E-03 |
| 70 | GO:0045962: positive regulation of development, heterochronic | 2.40E-03 |
| 71 | GO:0006139: nucleobase-containing compound metabolic process | 2.40E-03 |
| 72 | GO:0009228: thiamine biosynthetic process | 2.40E-03 |
| 73 | GO:0009635: response to herbicide | 2.40E-03 |
| 74 | GO:0032502: developmental process | 2.42E-03 |
| 75 | GO:0009088: threonine biosynthetic process | 2.89E-03 |
| 76 | GO:0048444: floral organ morphogenesis | 2.89E-03 |
| 77 | GO:0009648: photoperiodism | 2.89E-03 |
| 78 | GO:0042372: phylloquinone biosynthetic process | 2.89E-03 |
| 79 | GO:0009903: chloroplast avoidance movement | 2.89E-03 |
| 80 | GO:0015693: magnesium ion transport | 3.40E-03 |
| 81 | GO:0010161: red light signaling pathway | 3.40E-03 |
| 82 | GO:0048528: post-embryonic root development | 3.40E-03 |
| 83 | GO:0006400: tRNA modification | 3.40E-03 |
| 84 | GO:0010029: regulation of seed germination | 3.45E-03 |
| 85 | GO:0009627: systemic acquired resistance | 3.64E-03 |
| 86 | GO:0006402: mRNA catabolic process | 3.94E-03 |
| 87 | GO:0042255: ribosome assembly | 3.94E-03 |
| 88 | GO:0006353: DNA-templated transcription, termination | 3.94E-03 |
| 89 | GO:0006875: cellular metal ion homeostasis | 3.94E-03 |
| 90 | GO:0010078: maintenance of root meristem identity | 3.94E-03 |
| 91 | GO:0009704: de-etiolation | 3.94E-03 |
| 92 | GO:0007623: circadian rhythm | 4.26E-03 |
| 93 | GO:0043562: cellular response to nitrogen levels | 4.51E-03 |
| 94 | GO:0010093: specification of floral organ identity | 4.51E-03 |
| 95 | GO:0010099: regulation of photomorphogenesis | 4.51E-03 |
| 96 | GO:0006002: fructose 6-phosphate metabolic process | 4.51E-03 |
| 97 | GO:0010100: negative regulation of photomorphogenesis | 4.51E-03 |
| 98 | GO:0032544: plastid translation | 4.51E-03 |
| 99 | GO:2000024: regulation of leaf development | 5.11E-03 |
| 100 | GO:0006783: heme biosynthetic process | 5.11E-03 |
| 101 | GO:0000373: Group II intron splicing | 5.11E-03 |
| 102 | GO:0006189: 'de novo' IMP biosynthetic process | 5.11E-03 |
| 103 | GO:0009638: phototropism | 5.74E-03 |
| 104 | GO:0009098: leucine biosynthetic process | 5.74E-03 |
| 105 | GO:0042761: very long-chain fatty acid biosynthetic process | 5.74E-03 |
| 106 | GO:1900865: chloroplast RNA modification | 5.74E-03 |
| 107 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.74E-03 |
| 108 | GO:0006839: mitochondrial transport | 6.13E-03 |
| 109 | GO:0045036: protein targeting to chloroplast | 6.38E-03 |
| 110 | GO:0006949: syncytium formation | 6.38E-03 |
| 111 | GO:0009299: mRNA transcription | 6.38E-03 |
| 112 | GO:0006535: cysteine biosynthetic process from serine | 6.38E-03 |
| 113 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.06E-03 |
| 114 | GO:0006415: translational termination | 7.06E-03 |
| 115 | GO:1903507: negative regulation of nucleic acid-templated transcription | 7.06E-03 |
| 116 | GO:0009658: chloroplast organization | 7.43E-03 |
| 117 | GO:0016024: CDP-diacylglycerol biosynthetic process | 7.76E-03 |
| 118 | GO:0045037: protein import into chloroplast stroma | 7.76E-03 |
| 119 | GO:0009965: leaf morphogenesis | 7.80E-03 |
| 120 | GO:0030036: actin cytoskeleton organization | 8.48E-03 |
| 121 | GO:0009725: response to hormone | 8.48E-03 |
| 122 | GO:0010588: cotyledon vascular tissue pattern formation | 8.48E-03 |
| 123 | GO:0030048: actin filament-based movement | 8.48E-03 |
| 124 | GO:0048467: gynoecium development | 9.23E-03 |
| 125 | GO:0009933: meristem structural organization | 9.23E-03 |
| 126 | GO:0019853: L-ascorbic acid biosynthetic process | 1.00E-02 |
| 127 | GO:0090351: seedling development | 1.00E-02 |
| 128 | GO:0010030: positive regulation of seed germination | 1.00E-02 |
| 129 | GO:0006833: water transport | 1.08E-02 |
| 130 | GO:0010025: wax biosynthetic process | 1.08E-02 |
| 131 | GO:0005992: trehalose biosynthetic process | 1.16E-02 |
| 132 | GO:0019344: cysteine biosynthetic process | 1.16E-02 |
| 133 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.16E-02 |
| 134 | GO:0007010: cytoskeleton organization | 1.16E-02 |
| 135 | GO:0051017: actin filament bundle assembly | 1.16E-02 |
| 136 | GO:0043622: cortical microtubule organization | 1.24E-02 |
| 137 | GO:0003333: amino acid transmembrane transport | 1.33E-02 |
| 138 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.42E-02 |
| 139 | GO:0006012: galactose metabolic process | 1.51E-02 |
| 140 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.51E-02 |
| 141 | GO:0009686: gibberellin biosynthetic process | 1.51E-02 |
| 142 | GO:0010091: trichome branching | 1.60E-02 |
| 143 | GO:0016117: carotenoid biosynthetic process | 1.70E-02 |
| 144 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.70E-02 |
| 145 | GO:0055114: oxidation-reduction process | 1.74E-02 |
| 146 | GO:0010087: phloem or xylem histogenesis | 1.79E-02 |
| 147 | GO:0042631: cellular response to water deprivation | 1.79E-02 |
| 148 | GO:0000226: microtubule cytoskeleton organization | 1.79E-02 |
| 149 | GO:0042335: cuticle development | 1.79E-02 |
| 150 | GO:0080022: primary root development | 1.79E-02 |
| 151 | GO:0008033: tRNA processing | 1.79E-02 |
| 152 | GO:0034220: ion transmembrane transport | 1.79E-02 |
| 153 | GO:0008360: regulation of cell shape | 1.89E-02 |
| 154 | GO:0009958: positive gravitropism | 1.89E-02 |
| 155 | GO:0010154: fruit development | 1.89E-02 |
| 156 | GO:0009646: response to absence of light | 1.99E-02 |
| 157 | GO:0009851: auxin biosynthetic process | 2.09E-02 |
| 158 | GO:0009791: post-embryonic development | 2.09E-02 |
| 159 | GO:0048825: cotyledon development | 2.09E-02 |
| 160 | GO:0008654: phospholipid biosynthetic process | 2.09E-02 |
| 161 | GO:0016132: brassinosteroid biosynthetic process | 2.19E-02 |
| 162 | GO:0010583: response to cyclopentenone | 2.30E-02 |
| 163 | GO:0016032: viral process | 2.30E-02 |
| 164 | GO:0006464: cellular protein modification process | 2.52E-02 |
| 165 | GO:0009828: plant-type cell wall loosening | 2.52E-02 |
| 166 | GO:0007166: cell surface receptor signaling pathway | 2.65E-02 |
| 167 | GO:0000910: cytokinesis | 2.74E-02 |
| 168 | GO:0009735: response to cytokinin | 2.94E-02 |
| 169 | GO:0006974: cellular response to DNA damage stimulus | 3.09E-02 |
| 170 | GO:0015995: chlorophyll biosynthetic process | 3.20E-02 |
| 171 | GO:0010411: xyloglucan metabolic process | 3.20E-02 |
| 172 | GO:0048573: photoperiodism, flowering | 3.20E-02 |
| 173 | GO:0009826: unidimensional cell growth | 3.45E-02 |
| 174 | GO:0000160: phosphorelay signal transduction system | 3.57E-02 |
| 175 | GO:0009813: flavonoid biosynthetic process | 3.57E-02 |
| 176 | GO:0009910: negative regulation of flower development | 3.82E-02 |
| 177 | GO:0048527: lateral root development | 3.82E-02 |
| 178 | GO:0006865: amino acid transport | 3.95E-02 |
| 179 | GO:0009637: response to blue light | 4.08E-02 |
| 180 | GO:0048366: leaf development | 4.20E-02 |
| 181 | GO:0006810: transport | 4.41E-02 |
| 182 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.57E-02 |
| 183 | GO:0006897: endocytosis | 4.61E-02 |
| 184 | GO:0006631: fatty acid metabolic process | 4.61E-02 |
| 185 | GO:0046777: protein autophosphorylation | 4.73E-02 |
| 186 | GO:0008283: cell proliferation | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019136: deoxynucleoside kinase activity | 0.00E+00 |
| 2 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 3 | GO:0061634: alpha-D-xyloside xylohydrolase | 0.00E+00 |
| 4 | GO:0043864: indoleacetamide hydrolase activity | 0.00E+00 |
| 5 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 6 | GO:0019808: polyamine binding | 0.00E+00 |
| 7 | GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity | 0.00E+00 |
| 8 | GO:0080176: xyloglucan 1,6-alpha-xylosidase activity | 0.00E+00 |
| 9 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 10 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.22E-04 |
| 11 | GO:0010313: phytochrome binding | 2.22E-04 |
| 12 | GO:0003984: acetolactate synthase activity | 2.22E-04 |
| 13 | GO:0015088: copper uptake transmembrane transporter activity | 2.22E-04 |
| 14 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.22E-04 |
| 15 | GO:0017118: lipoyltransferase activity | 4.95E-04 |
| 16 | GO:0043425: bHLH transcription factor binding | 4.95E-04 |
| 17 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 4.95E-04 |
| 18 | GO:0003938: IMP dehydrogenase activity | 4.95E-04 |
| 19 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.95E-04 |
| 20 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 4.95E-04 |
| 21 | GO:0004512: inositol-3-phosphate synthase activity | 4.95E-04 |
| 22 | GO:0015172: acidic amino acid transmembrane transporter activity | 4.95E-04 |
| 23 | GO:0050017: L-3-cyanoalanine synthase activity | 4.95E-04 |
| 24 | GO:0010291: carotene beta-ring hydroxylase activity | 4.95E-04 |
| 25 | GO:0042803: protein homodimerization activity | 6.09E-04 |
| 26 | GO:0070330: aromatase activity | 8.05E-04 |
| 27 | GO:0042802: identical protein binding | 1.09E-03 |
| 28 | GO:0052654: L-leucine transaminase activity | 1.15E-03 |
| 29 | GO:0052655: L-valine transaminase activity | 1.15E-03 |
| 30 | GO:0004072: aspartate kinase activity | 1.15E-03 |
| 31 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.15E-03 |
| 32 | GO:0003999: adenine phosphoribosyltransferase activity | 1.15E-03 |
| 33 | GO:0016851: magnesium chelatase activity | 1.15E-03 |
| 34 | GO:0052656: L-isoleucine transaminase activity | 1.15E-03 |
| 35 | GO:0003727: single-stranded RNA binding | 1.46E-03 |
| 36 | GO:0004737: pyruvate decarboxylase activity | 1.53E-03 |
| 37 | GO:0008409: 5'-3' exonuclease activity | 1.53E-03 |
| 38 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.53E-03 |
| 39 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.53E-03 |
| 40 | GO:0009044: xylan 1,4-beta-xylosidase activity | 1.53E-03 |
| 41 | GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity | 1.53E-03 |
| 42 | GO:0046556: alpha-L-arabinofuranosidase activity | 1.53E-03 |
| 43 | GO:0010294: abscisic acid glucosyltransferase activity | 1.95E-03 |
| 44 | GO:0016846: carbon-sulfur lyase activity | 1.95E-03 |
| 45 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.95E-03 |
| 46 | GO:0004040: amidase activity | 1.95E-03 |
| 47 | GO:0018685: alkane 1-monooxygenase activity | 1.95E-03 |
| 48 | GO:0030976: thiamine pyrophosphate binding | 2.40E-03 |
| 49 | GO:0016208: AMP binding | 2.40E-03 |
| 50 | GO:0042578: phosphoric ester hydrolase activity | 2.40E-03 |
| 51 | GO:0004124: cysteine synthase activity | 2.89E-03 |
| 52 | GO:0003730: mRNA 3'-UTR binding | 2.89E-03 |
| 53 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 2.89E-03 |
| 54 | GO:0003872: 6-phosphofructokinase activity | 3.40E-03 |
| 55 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 3.90E-03 |
| 56 | GO:0004033: aldo-keto reductase (NADP) activity | 3.94E-03 |
| 57 | GO:0043022: ribosome binding | 3.94E-03 |
| 58 | GO:0008017: microtubule binding | 4.52E-03 |
| 59 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 4.91E-03 |
| 60 | GO:0003747: translation release factor activity | 5.11E-03 |
| 61 | GO:0005381: iron ion transmembrane transporter activity | 5.74E-03 |
| 62 | GO:0004805: trehalose-phosphatase activity | 6.38E-03 |
| 63 | GO:0015095: magnesium ion transmembrane transporter activity | 8.48E-03 |
| 64 | GO:0031072: heat shock protein binding | 8.48E-03 |
| 65 | GO:0009982: pseudouridine synthase activity | 8.48E-03 |
| 66 | GO:0003725: double-stranded RNA binding | 8.48E-03 |
| 67 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.23E-03 |
| 68 | GO:0003887: DNA-directed DNA polymerase activity | 1.08E-02 |
| 69 | GO:0052689: carboxylic ester hydrolase activity | 1.11E-02 |
| 70 | GO:0005528: FK506 binding | 1.16E-02 |
| 71 | GO:0003714: transcription corepressor activity | 1.16E-02 |
| 72 | GO:0016740: transferase activity | 1.18E-02 |
| 73 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 1.22E-02 |
| 74 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 1.22E-02 |
| 75 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.33E-02 |
| 76 | GO:0019825: oxygen binding | 1.49E-02 |
| 77 | GO:0030570: pectate lyase activity | 1.51E-02 |
| 78 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.72E-02 |
| 79 | GO:0016829: lyase activity | 1.81E-02 |
| 80 | GO:0008536: Ran GTPase binding | 1.89E-02 |
| 81 | GO:0001085: RNA polymerase II transcription factor binding | 1.89E-02 |
| 82 | GO:0010181: FMN binding | 1.99E-02 |
| 83 | GO:0050662: coenzyme binding | 1.99E-02 |
| 84 | GO:0003723: RNA binding | 2.14E-02 |
| 85 | GO:0051015: actin filament binding | 2.41E-02 |
| 86 | GO:0000156: phosphorelay response regulator activity | 2.41E-02 |
| 87 | GO:0005506: iron ion binding | 2.47E-02 |
| 88 | GO:0008194: UDP-glycosyltransferase activity | 2.59E-02 |
| 89 | GO:0016597: amino acid binding | 2.74E-02 |
| 90 | GO:0015250: water channel activity | 2.85E-02 |
| 91 | GO:0004721: phosphoprotein phosphatase activity | 3.20E-02 |
| 92 | GO:0030247: polysaccharide binding | 3.20E-02 |
| 93 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.45E-02 |
| 94 | GO:0005515: protein binding | 3.51E-02 |
| 95 | GO:0015238: drug transmembrane transporter activity | 3.57E-02 |
| 96 | GO:0016788: hydrolase activity, acting on ester bonds | 3.65E-02 |
| 97 | GO:0016491: oxidoreductase activity | 3.77E-02 |
| 98 | GO:0003682: chromatin binding | 3.78E-02 |
| 99 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.82E-02 |
| 100 | GO:0050660: flavin adenine dinucleotide binding | 4.13E-02 |
| 101 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.47E-02 |
| 102 | GO:0020037: heme binding | 4.89E-02 |