GO Enrichment Analysis of Co-expressed Genes with
AT1G59990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 2 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 3 | GO:0046719: regulation by virus of viral protein levels in host cell | 0.00E+00 |
| 4 | GO:0033473: indoleacetic acid conjugate metabolic process | 0.00E+00 |
| 5 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 6 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 7 | GO:0010342: endosperm cellularization | 6.10E-05 |
| 8 | GO:0034757: negative regulation of iron ion transport | 6.10E-05 |
| 9 | GO:0043971: histone H3-K18 acetylation | 6.10E-05 |
| 10 | GO:1903866: palisade mesophyll development | 6.10E-05 |
| 11 | GO:0010480: microsporocyte differentiation | 6.10E-05 |
| 12 | GO:0033206: meiotic cytokinesis | 6.10E-05 |
| 13 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.31E-04 |
| 14 | GO:0010271: regulation of chlorophyll catabolic process | 1.48E-04 |
| 15 | GO:0071705: nitrogen compound transport | 2.51E-04 |
| 16 | GO:0080117: secondary growth | 2.51E-04 |
| 17 | GO:0090391: granum assembly | 2.51E-04 |
| 18 | GO:0010589: leaf proximal/distal pattern formation | 2.51E-04 |
| 19 | GO:0010305: leaf vascular tissue pattern formation | 3.35E-04 |
| 20 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 3.65E-04 |
| 21 | GO:0009800: cinnamic acid biosynthetic process | 3.65E-04 |
| 22 | GO:1900864: mitochondrial RNA modification | 4.88E-04 |
| 23 | GO:0071249: cellular response to nitrate | 4.88E-04 |
| 24 | GO:0035279: mRNA cleavage involved in gene silencing by miRNA | 4.88E-04 |
| 25 | GO:0000914: phragmoplast assembly | 4.88E-04 |
| 26 | GO:0009616: virus induced gene silencing | 6.19E-04 |
| 27 | GO:0010029: regulation of seed germination | 6.25E-04 |
| 28 | GO:0042176: regulation of protein catabolic process | 7.57E-04 |
| 29 | GO:0006559: L-phenylalanine catabolic process | 7.57E-04 |
| 30 | GO:0042793: transcription from plastid promoter | 7.57E-04 |
| 31 | GO:0048831: regulation of shoot system development | 7.57E-04 |
| 32 | GO:0000911: cytokinesis by cell plate formation | 9.01E-04 |
| 33 | GO:2000033: regulation of seed dormancy process | 9.01E-04 |
| 34 | GO:0048509: regulation of meristem development | 9.01E-04 |
| 35 | GO:0035196: production of miRNAs involved in gene silencing by miRNA | 1.05E-03 |
| 36 | GO:0006955: immune response | 1.05E-03 |
| 37 | GO:0048437: floral organ development | 1.05E-03 |
| 38 | GO:0042255: ribosome assembly | 1.21E-03 |
| 39 | GO:0006353: DNA-templated transcription, termination | 1.21E-03 |
| 40 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 1.21E-03 |
| 41 | GO:0010093: specification of floral organ identity | 1.38E-03 |
| 42 | GO:0009827: plant-type cell wall modification | 1.38E-03 |
| 43 | GO:0001510: RNA methylation | 1.38E-03 |
| 44 | GO:0044030: regulation of DNA methylation | 1.38E-03 |
| 45 | GO:0048507: meristem development | 1.55E-03 |
| 46 | GO:0009909: regulation of flower development | 1.79E-03 |
| 47 | GO:0030422: production of siRNA involved in RNA interference | 1.92E-03 |
| 48 | GO:0048765: root hair cell differentiation | 2.12E-03 |
| 49 | GO:0048229: gametophyte development | 2.12E-03 |
| 50 | GO:0015706: nitrate transport | 2.32E-03 |
| 51 | GO:0010075: regulation of meristem growth | 2.52E-03 |
| 52 | GO:0009934: regulation of meristem structural organization | 2.74E-03 |
| 53 | GO:0006355: regulation of transcription, DNA-templated | 2.85E-03 |
| 54 | GO:0080188: RNA-directed DNA methylation | 2.96E-03 |
| 55 | GO:0010167: response to nitrate | 2.96E-03 |
| 56 | GO:0006071: glycerol metabolic process | 3.18E-03 |
| 57 | GO:0009790: embryo development | 3.33E-03 |
| 58 | GO:0009863: salicylic acid mediated signaling pathway | 3.42E-03 |
| 59 | GO:0010187: negative regulation of seed germination | 3.42E-03 |
| 60 | GO:2000377: regulation of reactive oxygen species metabolic process | 3.42E-03 |
| 61 | GO:0009416: response to light stimulus | 3.48E-03 |
| 62 | GO:0016998: cell wall macromolecule catabolic process | 3.89E-03 |
| 63 | GO:0071215: cellular response to abscisic acid stimulus | 4.40E-03 |
| 64 | GO:0006284: base-excision repair | 4.65E-03 |
| 65 | GO:0008380: RNA splicing | 4.68E-03 |
| 66 | GO:0070417: cellular response to cold | 4.92E-03 |
| 67 | GO:0048653: anther development | 5.19E-03 |
| 68 | GO:0042335: cuticle development | 5.19E-03 |
| 69 | GO:0010087: phloem or xylem histogenesis | 5.19E-03 |
| 70 | GO:0046323: glucose import | 5.46E-03 |
| 71 | GO:0009658: chloroplast organization | 6.06E-03 |
| 72 | GO:0006970: response to osmotic stress | 6.53E-03 |
| 73 | GO:0032502: developmental process | 6.61E-03 |
| 74 | GO:0010090: trichome morphogenesis | 6.91E-03 |
| 75 | GO:0000910: cytokinesis | 7.84E-03 |
| 76 | GO:0010027: thylakoid membrane organization | 8.16E-03 |
| 77 | GO:0016567: protein ubiquitination | 9.22E-03 |
| 78 | GO:0000160: phosphorelay signal transduction system | 1.02E-02 |
| 79 | GO:0010218: response to far red light | 1.05E-02 |
| 80 | GO:0009910: negative regulation of flower development | 1.09E-02 |
| 81 | GO:0048364: root development | 1.16E-02 |
| 82 | GO:0009867: jasmonic acid mediated signaling pathway | 1.16E-02 |
| 83 | GO:0030001: metal ion transport | 1.27E-02 |
| 84 | GO:0006351: transcription, DNA-templated | 1.28E-02 |
| 85 | GO:0009640: photomorphogenesis | 1.39E-02 |
| 86 | GO:0009636: response to toxic substance | 1.51E-02 |
| 87 | GO:0009965: leaf morphogenesis | 1.51E-02 |
| 88 | GO:0031347: regulation of defense response | 1.59E-02 |
| 89 | GO:0042538: hyperosmotic salinity response | 1.63E-02 |
| 90 | GO:0009736: cytokinin-activated signaling pathway | 1.71E-02 |
| 91 | GO:0048367: shoot system development | 1.97E-02 |
| 92 | GO:0006412: translation | 2.07E-02 |
| 93 | GO:0009740: gibberellic acid mediated signaling pathway | 2.11E-02 |
| 94 | GO:0009737: response to abscisic acid | 2.22E-02 |
| 95 | GO:0016310: phosphorylation | 2.65E-02 |
| 96 | GO:0009451: RNA modification | 3.30E-02 |
| 97 | GO:0006468: protein phosphorylation | 3.69E-02 |
| 98 | GO:0009651: response to salt stress | 3.90E-02 |
| 99 | GO:0009414: response to water deprivation | 3.90E-02 |
| 100 | GO:0009723: response to ethylene | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 6.10E-05 |
| 2 | GO:0009884: cytokinin receptor activity | 1.48E-04 |
| 3 | GO:0004180: carboxypeptidase activity | 2.51E-04 |
| 4 | GO:0045548: phenylalanine ammonia-lyase activity | 2.51E-04 |
| 5 | GO:0070181: small ribosomal subunit rRNA binding | 2.51E-04 |
| 6 | GO:0016805: dipeptidase activity | 2.51E-04 |
| 7 | GO:0005034: osmosensor activity | 2.51E-04 |
| 8 | GO:0003727: single-stranded RNA binding | 2.64E-04 |
| 9 | GO:0005354: galactose transmembrane transporter activity | 3.65E-04 |
| 10 | GO:0010385: double-stranded methylated DNA binding | 4.88E-04 |
| 11 | GO:0008725: DNA-3-methyladenine glycosylase activity | 6.19E-04 |
| 12 | GO:0080030: methyl indole-3-acetate esterase activity | 7.57E-04 |
| 13 | GO:0019900: kinase binding | 9.01E-04 |
| 14 | GO:0003697: single-stranded DNA binding | 9.58E-04 |
| 15 | GO:0004871: signal transducer activity | 1.38E-03 |
| 16 | GO:0008173: RNA methyltransferase activity | 1.38E-03 |
| 17 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 1.55E-03 |
| 18 | GO:0000989: transcription factor activity, transcription factor binding | 1.55E-03 |
| 19 | GO:0003690: double-stranded DNA binding | 1.68E-03 |
| 20 | GO:0008171: O-methyltransferase activity | 1.92E-03 |
| 21 | GO:0004673: protein histidine kinase activity | 1.92E-03 |
| 22 | GO:0031072: heat shock protein binding | 2.52E-03 |
| 23 | GO:0000155: phosphorelay sensor kinase activity | 2.52E-03 |
| 24 | GO:0009982: pseudouridine synthase activity | 2.52E-03 |
| 25 | GO:0019843: rRNA binding | 2.86E-03 |
| 26 | GO:0043424: protein histidine kinase binding | 3.65E-03 |
| 27 | GO:0033612: receptor serine/threonine kinase binding | 3.89E-03 |
| 28 | GO:0003735: structural constituent of ribosome | 4.84E-03 |
| 29 | GO:0004402: histone acetyltransferase activity | 5.19E-03 |
| 30 | GO:0004674: protein serine/threonine kinase activity | 5.38E-03 |
| 31 | GO:0005355: glucose transmembrane transporter activity | 5.74E-03 |
| 32 | GO:0016788: hydrolase activity, acting on ester bonds | 6.18E-03 |
| 33 | GO:0016759: cellulose synthase activity | 7.21E-03 |
| 34 | GO:0003677: DNA binding | 7.44E-03 |
| 35 | GO:0042393: histone binding | 1.27E-02 |
| 36 | GO:0043621: protein self-association | 1.47E-02 |
| 37 | GO:0016301: kinase activity | 1.60E-02 |
| 38 | GO:0051082: unfolded protein binding | 2.20E-02 |
| 39 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.84E-02 |
| 40 | GO:0015144: carbohydrate transmembrane transporter activity | 2.94E-02 |
| 41 | GO:0005351: sugar:proton symporter activity | 3.20E-02 |
| 42 | GO:0008017: microtubule binding | 3.36E-02 |
| 43 | GO:0003723: RNA binding | 3.74E-02 |
| 44 | GO:0042802: identical protein binding | 3.85E-02 |
| 45 | GO:0050660: flavin adenine dinucleotide binding | 4.91E-02 |