Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56550

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006654: phosphatidic acid biosynthetic process0.00E+00
2GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
3GO:0010407: non-classical arabinogalactan protein metabolic process0.00E+00
4GO:0016574: histone ubiquitination0.00E+00
5GO:0002084: protein depalmitoylation0.00E+00
6GO:0009312: oligosaccharide biosynthetic process0.00E+00
7GO:0046865: terpenoid transport0.00E+00
8GO:0051707: response to other organism2.27E-06
9GO:0009751: response to salicylic acid1.44E-04
10GO:0009814: defense response, incompatible interaction2.35E-04
11GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.38E-04
12GO:0071446: cellular response to salicylic acid stimulus3.09E-04
13GO:0031123: RNA 3'-end processing3.55E-04
14GO:0071076: RNA 3' uridylation3.55E-04
15GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.55E-04
16GO:0090567: reproductive shoot system development3.55E-04
17GO:0009700: indole phytoalexin biosynthetic process3.55E-04
18GO:0098789: pre-mRNA cleavage required for polyadenylation3.55E-04
19GO:0042868: antisense RNA metabolic process3.55E-04
20GO:0042759: long-chain fatty acid biosynthetic process3.55E-04
21GO:1900150: regulation of defense response to fungus3.89E-04
22GO:0006623: protein targeting to vacuole4.90E-04
23GO:0015709: thiosulfate transport7.72E-04
24GO:0031204: posttranslational protein targeting to membrane, translocation7.72E-04
25GO:0071422: succinate transmembrane transport7.72E-04
26GO:0046939: nucleotide phosphorylation7.72E-04
27GO:0080151: positive regulation of salicylic acid mediated signaling pathway7.72E-04
28GO:1902066: regulation of cell wall pectin metabolic process7.72E-04
29GO:0042853: L-alanine catabolic process7.72E-04
30GO:0007584: response to nutrient7.72E-04
31GO:0051252: regulation of RNA metabolic process7.72E-04
32GO:0006996: organelle organization7.72E-04
33GO:0009156: ribonucleoside monophosphate biosynthetic process7.72E-04
34GO:0042742: defense response to bacterium8.83E-04
35GO:0015783: GDP-fucose transport1.25E-03
36GO:0006517: protein deglycosylation1.25E-03
37GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.25E-03
38GO:0015692: lead ion transport1.25E-03
39GO:0060968: regulation of gene silencing1.25E-03
40GO:0080168: abscisic acid transport1.25E-03
41GO:0048586: regulation of long-day photoperiodism, flowering1.25E-03
42GO:0032922: circadian regulation of gene expression1.25E-03
43GO:1901672: positive regulation of systemic acquired resistance1.25E-03
44GO:0061158: 3'-UTR-mediated mRNA destabilization1.25E-03
45GO:0017006: protein-tetrapyrrole linkage1.25E-03
46GO:0006499: N-terminal protein myristoylation1.34E-03
47GO:0006515: misfolded or incompletely synthesized protein catabolic process1.80E-03
48GO:0055089: fatty acid homeostasis1.80E-03
49GO:0060964: regulation of gene silencing by miRNA1.80E-03
50GO:0015729: oxaloacetate transport1.80E-03
51GO:0009584: detection of visible light1.80E-03
52GO:0010306: rhamnogalacturonan II biosynthetic process1.80E-03
53GO:0010104: regulation of ethylene-activated signaling pathway1.80E-03
54GO:0010731: protein glutathionylation1.80E-03
55GO:0006516: glycoprotein catabolic process1.80E-03
56GO:1902290: positive regulation of defense response to oomycetes1.80E-03
57GO:0055070: copper ion homeostasis1.80E-03
58GO:0046513: ceramide biosynthetic process1.80E-03
59GO:0048278: vesicle docking2.20E-03
60GO:0000209: protein polyubiquitination2.33E-03
61GO:0071456: cellular response to hypoxia2.41E-03
62GO:0009165: nucleotide biosynthetic process2.42E-03
63GO:0010363: regulation of plant-type hypersensitive response2.42E-03
64GO:0010107: potassium ion import2.42E-03
65GO:0010188: response to microbial phytotoxin2.42E-03
66GO:0009636: response to toxic substance2.57E-03
67GO:0009617: response to bacterium2.79E-03
68GO:0009435: NAD biosynthetic process3.09E-03
69GO:0009247: glycolipid biosynthetic process3.09E-03
70GO:0071423: malate transmembrane transport3.09E-03
71GO:0071368: cellular response to cytokinin stimulus3.09E-03
72GO:0006486: protein glycosylation3.23E-03
73GO:0045040: protein import into mitochondrial outer membrane3.82E-03
74GO:0035435: phosphate ion transmembrane transport3.82E-03
75GO:0002238: response to molecule of fungal origin3.82E-03
76GO:0006952: defense response4.10E-03
77GO:0010193: response to ozone4.45E-03
78GO:0080113: regulation of seed growth4.60E-03
79GO:0045995: regulation of embryonic development5.44E-03
80GO:1900056: negative regulation of leaf senescence5.44E-03
81GO:0080186: developmental vegetative growth5.44E-03
82GO:2000014: regulation of endosperm development5.44E-03
83GO:0008272: sulfate transport5.44E-03
84GO:0051607: defense response to virus6.08E-03
85GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline6.32E-03
86GO:0019375: galactolipid biosynthetic process6.32E-03
87GO:0009816: defense response to bacterium, incompatible interaction6.81E-03
88GO:0009627: systemic acquired resistance7.20E-03
89GO:0006906: vesicle fusion7.20E-03
90GO:0030968: endoplasmic reticulum unfolded protein response7.25E-03
91GO:2000031: regulation of salicylic acid mediated signaling pathway7.25E-03
92GO:0006002: fructose 6-phosphate metabolic process7.25E-03
93GO:0001558: regulation of cell growth7.25E-03
94GO:0006367: transcription initiation from RNA polymerase II promoter7.25E-03
95GO:0010120: camalexin biosynthetic process7.25E-03
96GO:0009056: catabolic process8.22E-03
97GO:0015780: nucleotide-sugar transport8.22E-03
98GO:0019432: triglyceride biosynthetic process8.22E-03
99GO:0010112: regulation of systemic acquired resistance8.22E-03
100GO:0048589: developmental growth8.22E-03
101GO:0008219: cell death8.42E-03
102GO:1900426: positive regulation of defense response to bacterium9.24E-03
103GO:0043067: regulation of programmed cell death9.24E-03
104GO:0090332: stomatal closure9.24E-03
105GO:0010267: production of ta-siRNAs involved in RNA interference9.24E-03
106GO:0048268: clathrin coat assembly9.24E-03
107GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.24E-03
108GO:0008202: steroid metabolic process9.24E-03
109GO:0009407: toxin catabolic process9.29E-03
110GO:0010043: response to zinc ion9.74E-03
111GO:0000724: double-strand break repair via homologous recombination1.02E-02
112GO:0010150: leaf senescence1.02E-02
113GO:0043069: negative regulation of programmed cell death1.03E-02
114GO:0010629: negative regulation of gene expression1.03E-02
115GO:0000103: sulfate assimilation1.03E-02
116GO:0009089: lysine biosynthetic process via diaminopimelate1.14E-02
117GO:0008361: regulation of cell size1.26E-02
118GO:0012501: programmed cell death1.26E-02
119GO:0016925: protein sumoylation1.26E-02
120GO:0006631: fatty acid metabolic process1.27E-02
121GO:2000028: regulation of photoperiodism, flowering1.38E-02
122GO:0050826: response to freezing1.38E-02
123GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.38E-02
124GO:0010102: lateral root morphogenesis1.38E-02
125GO:0010628: positive regulation of gene expression1.38E-02
126GO:0006626: protein targeting to mitochondrion1.38E-02
127GO:0002237: response to molecule of bacterial origin1.50E-02
128GO:0007034: vacuolar transport1.50E-02
129GO:0006855: drug transmembrane transport1.61E-02
130GO:0010053: root epidermal cell differentiation1.62E-02
131GO:0042343: indole glucosinolate metabolic process1.62E-02
132GO:0007030: Golgi organization1.62E-02
133GO:0010030: positive regulation of seed germination1.62E-02
134GO:0070588: calcium ion transmembrane transport1.62E-02
135GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.68E-02
136GO:0006071: glycerol metabolic process1.76E-02
137GO:0034976: response to endoplasmic reticulum stress1.76E-02
138GO:0006636: unsaturated fatty acid biosynthetic process1.76E-02
139GO:0006487: protein N-linked glycosylation1.89E-02
140GO:0009116: nucleoside metabolic process1.89E-02
141GO:0006289: nucleotide-excision repair1.89E-02
142GO:0009723: response to ethylene2.14E-02
143GO:0098542: defense response to other organism2.17E-02
144GO:0006334: nucleosome assembly2.17E-02
145GO:0031408: oxylipin biosynthetic process2.17E-02
146GO:0010017: red or far-red light signaling pathway2.31E-02
147GO:2000022: regulation of jasmonic acid mediated signaling pathway2.31E-02
148GO:0030433: ubiquitin-dependent ERAD pathway2.31E-02
149GO:0009626: plant-type hypersensitive response2.35E-02
150GO:0009620: response to fungus2.43E-02
151GO:0009625: response to insect2.46E-02
152GO:0006012: galactose metabolic process2.46E-02
153GO:0010082: regulation of root meristem growth2.46E-02
154GO:0010584: pollen exine formation2.61E-02
155GO:0009306: protein secretion2.61E-02
156GO:0010118: stomatal movement2.92E-02
157GO:0042391: regulation of membrane potential2.92E-02
158GO:0008033: tRNA processing2.92E-02
159GO:0009960: endosperm development3.08E-02
160GO:0006662: glycerol ether metabolic process3.08E-02
161GO:0061025: membrane fusion3.25E-02
162GO:0042752: regulation of circadian rhythm3.25E-02
163GO:0048544: recognition of pollen3.25E-02
164GO:0009749: response to glucose3.41E-02
165GO:0002229: defense response to oomycetes3.58E-02
166GO:0000302: response to reactive oxygen species3.58E-02
167GO:0031047: gene silencing by RNA3.75E-02
168GO:0016032: viral process3.75E-02
169GO:1901657: glycosyl compound metabolic process3.93E-02
170GO:0009753: response to jasmonic acid4.12E-02
171GO:0008152: metabolic process4.27E-02
172GO:0009615: response to virus4.65E-02
173GO:0001666: response to hypoxia4.65E-02
174GO:0010029: regulation of seed germination4.84E-02
RankGO TermAdjusted P value
1GO:0034338: short-chain carboxylesterase activity0.00E+00
2GO:0044318: L-aspartate:fumarate oxidoreductase activity0.00E+00
3GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
4GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
5GO:0008734: L-aspartate oxidase activity0.00E+00
6GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
7GO:0050513: glycoprotein 2-beta-D-xylosyltransferase activity0.00E+00
8GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
9GO:0102425: myricetin 3-O-glucosyltransferase activity3.09E-04
10GO:0102360: daphnetin 3-O-glucosyltransferase activity3.09E-04
11GO:1990381: ubiquitin-specific protease binding3.55E-04
12GO:0046481: digalactosyldiacylglycerol synthase activity3.55E-04
13GO:0010285: L,L-diaminopimelate aminotransferase activity3.55E-04
14GO:0050265: RNA uridylyltransferase activity3.55E-04
15GO:0047893: flavonol 3-O-glucosyltransferase activity3.89E-04
16GO:0080045: quercetin 3'-O-glucosyltransferase activity7.72E-04
17GO:0050291: sphingosine N-acyltransferase activity7.72E-04
18GO:0009883: red or far-red light photoreceptor activity7.72E-04
19GO:0004809: tRNA (guanine-N2-)-methyltransferase activity7.72E-04
20GO:0008805: carbon-monoxide oxygenase activity7.72E-04
21GO:0008428: ribonuclease inhibitor activity7.72E-04
22GO:0004338: glucan exo-1,3-beta-glucosidase activity7.72E-04
23GO:0015117: thiosulfate transmembrane transporter activity7.72E-04
24GO:0048531: beta-1,3-galactosyltransferase activity7.72E-04
25GO:1901677: phosphate transmembrane transporter activity7.72E-04
26GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity7.72E-04
27GO:0008378: galactosyltransferase activity1.03E-03
28GO:0005457: GDP-fucose transmembrane transporter activity1.25E-03
29GO:0000030: mannosyltransferase activity1.25E-03
30GO:0005310: dicarboxylic acid transmembrane transporter activity1.25E-03
31GO:0015141: succinate transmembrane transporter activity1.25E-03
32GO:0008020: G-protein coupled photoreceptor activity1.25E-03
33GO:0017077: oxidative phosphorylation uncoupler activity1.80E-03
34GO:0004749: ribose phosphate diphosphokinase activity1.80E-03
35GO:0019201: nucleotide kinase activity1.80E-03
36GO:0015131: oxaloacetate transmembrane transporter activity1.80E-03
37GO:0035529: NADH pyrophosphatase activity1.80E-03
38GO:0035250: UDP-galactosyltransferase activity1.80E-03
39GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.80E-03
40GO:0035251: UDP-glucosyltransferase activity2.20E-03
41GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway2.42E-03
42GO:0001075: transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly2.42E-03
43GO:0008194: UDP-glycosyltransferase activity2.53E-03
44GO:0008948: oxaloacetate decarboxylase activity3.09E-03
45GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.09E-03
46GO:0004623: phospholipase A2 activity3.09E-03
47GO:0042285: xylosyltransferase activity3.09E-03
48GO:0031386: protein tag3.09E-03
49GO:0047631: ADP-ribose diphosphatase activity3.09E-03
50GO:0008474: palmitoyl-(protein) hydrolase activity3.82E-03
51GO:0000210: NAD+ diphosphatase activity3.82E-03
52GO:0035252: UDP-xylosyltransferase activity3.82E-03
53GO:0004017: adenylate kinase activity4.60E-03
54GO:0004012: phospholipid-translocating ATPase activity4.60E-03
55GO:0005261: cation channel activity4.60E-03
56GO:0003730: mRNA 3'-UTR binding4.60E-03
57GO:0004144: diacylglycerol O-acyltransferase activity4.60E-03
58GO:0004656: procollagen-proline 4-dioxygenase activity4.60E-03
59GO:0016621: cinnamoyl-CoA reductase activity5.44E-03
60GO:0009881: photoreceptor activity5.44E-03
61GO:0003872: 6-phosphofructokinase activity5.44E-03
62GO:0015140: malate transmembrane transporter activity5.44E-03
63GO:0004620: phospholipase activity5.44E-03
64GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity5.73E-03
65GO:0016301: kinase activity6.08E-03
66GO:0004034: aldose 1-epimerase activity6.32E-03
67GO:0004525: ribonuclease III activity6.32E-03
68GO:0004708: MAP kinase kinase activity6.32E-03
69GO:0016758: transferase activity, transferring hexosyl groups6.53E-03
70GO:0008375: acetylglucosaminyltransferase activity7.20E-03
71GO:0008142: oxysterol binding7.25E-03
72GO:0005267: potassium channel activity7.25E-03
73GO:0004222: metalloendopeptidase activity9.29E-03
74GO:0015297: antiporter activity9.61E-03
75GO:0004568: chitinase activity1.03E-02
76GO:0005545: 1-phosphatidylinositol binding1.03E-02
77GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.07E-02
78GO:0008559: xenobiotic-transporting ATPase activity1.14E-02
79GO:0047372: acylglycerol lipase activity1.14E-02
80GO:0000149: SNARE binding1.17E-02
81GO:0015116: sulfate transmembrane transporter activity1.26E-02
82GO:0000049: tRNA binding1.26E-02
83GO:0004364: glutathione transferase activity1.33E-02
84GO:0000155: phosphorelay sensor kinase activity1.38E-02
85GO:0005388: calcium-transporting ATPase activity1.38E-02
86GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.38E-02
87GO:0005484: SNAP receptor activity1.38E-02
88GO:0031624: ubiquitin conjugating enzyme binding1.50E-02
89GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.50E-02
90GO:0016757: transferase activity, transferring glycosyl groups1.58E-02
91GO:0030552: cAMP binding1.62E-02
92GO:0004867: serine-type endopeptidase inhibitor activity1.62E-02
93GO:0030553: cGMP binding1.62E-02
94GO:0003712: transcription cofactor activity1.62E-02
95GO:0031418: L-ascorbic acid binding1.89E-02
96GO:0008134: transcription factor binding1.89E-02
97GO:0016298: lipase activity1.93E-02
98GO:0043531: ADP binding2.00E-02
99GO:0005216: ion channel activity2.03E-02
100GO:0031625: ubiquitin protein ligase binding2.07E-02
101GO:0016779: nucleotidyltransferase activity2.31E-02
102GO:0005524: ATP binding2.42E-02
103GO:0080043: quercetin 3-O-glucosyltransferase activity2.43E-02
104GO:0080044: quercetin 7-O-glucosyltransferase activity2.43E-02
105GO:0008810: cellulase activity2.46E-02
106GO:0003756: protein disulfide isomerase activity2.61E-02
107GO:0051082: unfolded protein binding2.66E-02
108GO:0047134: protein-disulfide reductase activity2.77E-02
109GO:0005102: receptor binding2.77E-02
110GO:0005249: voltage-gated potassium channel activity2.92E-02
111GO:0030551: cyclic nucleotide binding2.92E-02
112GO:0003713: transcription coactivator activity3.08E-02
113GO:0030276: clathrin binding3.08E-02
114GO:0004871: signal transducer activity3.09E-02
115GO:0004791: thioredoxin-disulfide reductase activity3.25E-02
116GO:0016853: isomerase activity3.25E-02
117GO:0010181: FMN binding3.25E-02
118GO:0030170: pyridoxal phosphate binding3.69E-02
119GO:0030246: carbohydrate binding3.79E-02
120GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.93E-02
121GO:0000156: phosphorelay response regulator activity3.93E-02
122GO:0004842: ubiquitin-protein transferase activity4.24E-02
123GO:0008483: transaminase activity4.29E-02
124GO:0005516: calmodulin binding4.45E-02
125GO:0051213: dioxygenase activity4.65E-02
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Gene type



Gene DE type