Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G56500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042817: pyridoxal metabolic process0.00E+00
2GO:0090042: tubulin deacetylation0.00E+00
3GO:0006114: glycerol biosynthetic process0.00E+00
4GO:0018023: peptidyl-lysine trimethylation0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0070125: mitochondrial translational elongation0.00E+00
7GO:0006429: leucyl-tRNA aminoacylation0.00E+00
8GO:1905421: regulation of plant organ morphogenesis0.00E+00
9GO:0043488: regulation of mRNA stability0.00E+00
10GO:0030155: regulation of cell adhesion0.00E+00
11GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
12GO:0017038: protein import0.00E+00
13GO:0046460: neutral lipid biosynthetic process0.00E+00
14GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
15GO:0090071: negative regulation of ribosome biogenesis0.00E+00
16GO:0031116: positive regulation of microtubule polymerization0.00E+00
17GO:0042407: cristae formation0.00E+00
18GO:0009658: chloroplast organization8.30E-09
19GO:0009657: plastid organization3.30E-05
20GO:0009793: embryo development ending in seed dormancy1.31E-04
21GO:2000012: regulation of auxin polar transport1.43E-04
22GO:0045038: protein import into chloroplast thylakoid membrane1.89E-04
23GO:0006400: tRNA modification4.62E-04
24GO:0043266: regulation of potassium ion transport4.64E-04
25GO:0019478: D-amino acid catabolic process4.64E-04
26GO:0042547: cell wall modification involved in multidimensional cell growth4.64E-04
27GO:0042371: vitamin K biosynthetic process4.64E-04
28GO:2000021: regulation of ion homeostasis4.64E-04
29GO:1902458: positive regulation of stomatal opening4.64E-04
30GO:0006747: FAD biosynthetic process4.64E-04
31GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.64E-04
32GO:0006419: alanyl-tRNA aminoacylation4.64E-04
33GO:0000476: maturation of 4.5S rRNA4.64E-04
34GO:2000025: regulation of leaf formation4.64E-04
35GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.64E-04
36GO:0000967: rRNA 5'-end processing4.64E-04
37GO:0006438: valyl-tRNA aminoacylation4.64E-04
38GO:0071482: cellular response to light stimulus7.02E-04
39GO:0040008: regulation of growth8.11E-04
40GO:0009734: auxin-activated signaling pathway8.70E-04
41GO:1900865: chloroplast RNA modification9.90E-04
42GO:0018026: peptidyl-lysine monomethylation1.00E-03
43GO:0034755: iron ion transmembrane transport1.00E-03
44GO:0006423: cysteinyl-tRNA aminoacylation1.00E-03
45GO:0006435: threonyl-tRNA aminoacylation1.00E-03
46GO:0009220: pyrimidine ribonucleotide biosynthetic process1.00E-03
47GO:0001682: tRNA 5'-leader removal1.00E-03
48GO:1903426: regulation of reactive oxygen species biosynthetic process1.00E-03
49GO:0034470: ncRNA processing1.00E-03
50GO:0010198: synergid death1.00E-03
51GO:0006739: NADP metabolic process1.00E-03
52GO:0060359: response to ammonium ion1.00E-03
53GO:1900871: chloroplast mRNA modification1.00E-03
54GO:0009733: response to auxin1.07E-03
55GO:0006782: protoporphyrinogen IX biosynthetic process1.15E-03
56GO:0006352: DNA-templated transcription, initiation1.33E-03
57GO:0006415: translational termination1.33E-03
58GO:0010027: thylakoid membrane organization1.40E-03
59GO:0045037: protein import into chloroplast stroma1.52E-03
60GO:0009627: systemic acquired resistance1.62E-03
61GO:0015940: pantothenate biosynthetic process1.63E-03
62GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.63E-03
63GO:0001578: microtubule bundle formation1.63E-03
64GO:0045493: xylan catabolic process1.63E-03
65GO:0043157: response to cation stress1.63E-03
66GO:0005977: glycogen metabolic process1.63E-03
67GO:0033591: response to L-ascorbic acid1.63E-03
68GO:0048281: inflorescence morphogenesis1.63E-03
69GO:0019419: sulfate reduction1.63E-03
70GO:0006954: inflammatory response1.63E-03
71GO:0015995: chlorophyll biosynthetic process1.73E-03
72GO:0010020: chloroplast fission1.95E-03
73GO:0090351: seedling development2.19E-03
74GO:0006164: purine nucleotide biosynthetic process2.37E-03
75GO:0010148: transpiration2.37E-03
76GO:0016556: mRNA modification2.37E-03
77GO:2001141: regulation of RNA biosynthetic process2.37E-03
78GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.37E-03
79GO:0009102: biotin biosynthetic process2.37E-03
80GO:2001289: lipid X metabolic process2.37E-03
81GO:0009226: nucleotide-sugar biosynthetic process2.37E-03
82GO:0008615: pyridoxine biosynthetic process2.37E-03
83GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.37E-03
84GO:0006418: tRNA aminoacylation for protein translation2.99E-03
85GO:0007020: microtubule nucleation3.18E-03
86GO:0071483: cellular response to blue light3.18E-03
87GO:0006734: NADH metabolic process3.18E-03
88GO:0044205: 'de novo' UMP biosynthetic process3.18E-03
89GO:0010021: amylopectin biosynthetic process3.18E-03
90GO:0010109: regulation of photosynthesis3.18E-03
91GO:0051322: anaphase3.18E-03
92GO:0022622: root system development3.18E-03
93GO:0006730: one-carbon metabolic process3.59E-03
94GO:0032543: mitochondrial translation4.08E-03
95GO:0010236: plastoquinone biosynthetic process4.08E-03
96GO:0010158: abaxial cell fate specification4.08E-03
97GO:0046785: microtubule polymerization4.08E-03
98GO:0032973: amino acid export5.05E-03
99GO:0009959: negative gravitropism5.05E-03
100GO:0042793: transcription from plastid promoter5.05E-03
101GO:0016554: cytidine to uridine editing5.05E-03
102GO:0010190: cytochrome b6f complex assembly5.05E-03
103GO:0034389: lipid particle organization6.09E-03
104GO:0030488: tRNA methylation6.09E-03
105GO:0080086: stamen filament development6.09E-03
106GO:0009648: photoperiodism6.09E-03
107GO:0042372: phylloquinone biosynthetic process6.09E-03
108GO:0017148: negative regulation of translation6.09E-03
109GO:0009630: gravitropism7.13E-03
110GO:0030307: positive regulation of cell growth7.20E-03
111GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.20E-03
112GO:0010103: stomatal complex morphogenesis7.20E-03
113GO:0032880: regulation of protein localization7.20E-03
114GO:0048528: post-embryonic root development7.20E-03
115GO:0009772: photosynthetic electron transport in photosystem II7.20E-03
116GO:0043090: amino acid import7.20E-03
117GO:0070370: cellular heat acclimation7.20E-03
118GO:0010050: vegetative phase change7.20E-03
119GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.20E-03
120GO:0006605: protein targeting8.39E-03
121GO:0046620: regulation of organ growth8.39E-03
122GO:0006353: DNA-templated transcription, termination8.39E-03
123GO:0070413: trehalose metabolism in response to stress8.39E-03
124GO:2000070: regulation of response to water deprivation8.39E-03
125GO:0000105: histidine biosynthetic process8.39E-03
126GO:0009231: riboflavin biosynthetic process8.39E-03
127GO:0052543: callose deposition in cell wall8.39E-03
128GO:0048564: photosystem I assembly8.39E-03
129GO:0009850: auxin metabolic process8.39E-03
130GO:0006526: arginine biosynthetic process9.63E-03
131GO:0032544: plastid translation9.63E-03
132GO:0009932: cell tip growth9.63E-03
133GO:0022900: electron transport chain9.63E-03
134GO:0001558: regulation of cell growth9.63E-03
135GO:0019432: triglyceride biosynthetic process1.09E-02
136GO:0006783: heme biosynthetic process1.09E-02
137GO:0000373: Group II intron splicing1.09E-02
138GO:0015780: nucleotide-sugar transport1.09E-02
139GO:0009245: lipid A biosynthetic process1.09E-02
140GO:0010206: photosystem II repair1.09E-02
141GO:0006098: pentose-phosphate shunt1.09E-02
142GO:0080144: amino acid homeostasis1.09E-02
143GO:0043067: regulation of programmed cell death1.23E-02
144GO:0006779: porphyrin-containing compound biosynthetic process1.23E-02
145GO:0042761: very long-chain fatty acid biosynthetic process1.23E-02
146GO:0000103: sulfate assimilation1.37E-02
147GO:0045036: protein targeting to chloroplast1.37E-02
148GO:0006949: syncytium formation1.37E-02
149GO:0006259: DNA metabolic process1.37E-02
150GO:0009790: embryo development1.38E-02
151GO:1903507: negative regulation of nucleic acid-templated transcription1.52E-02
152GO:0006879: cellular iron ion homeostasis1.52E-02
153GO:0010015: root morphogenesis1.52E-02
154GO:0019684: photosynthesis, light reaction1.52E-02
155GO:0006265: DNA topological change1.52E-02
156GO:0009089: lysine biosynthetic process via diaminopimelate1.52E-02
157GO:0006413: translational initiation1.56E-02
158GO:0010582: floral meristem determinacy1.68E-02
159GO:0045490: pectin catabolic process1.71E-02
160GO:0006094: gluconeogenesis1.84E-02
161GO:0010207: photosystem II assembly2.00E-02
162GO:0010114: response to red light2.08E-02
163GO:0071732: cellular response to nitric oxide2.17E-02
164GO:0009965: leaf morphogenesis2.34E-02
165GO:0006071: glycerol metabolic process2.35E-02
166GO:0000162: tryptophan biosynthetic process2.35E-02
167GO:0010025: wax biosynthetic process2.35E-02
168GO:0005992: trehalose biosynthetic process2.53E-02
169GO:0019344: cysteine biosynthetic process2.53E-02
170GO:0009116: nucleoside metabolic process2.53E-02
171GO:0009944: polarity specification of adaxial/abaxial axis2.53E-02
172GO:0009664: plant-type cell wall organization2.61E-02
173GO:0043622: cortical microtubule organization2.71E-02
174GO:0051302: regulation of cell division2.71E-02
175GO:0016575: histone deacetylation2.71E-02
176GO:0007275: multicellular organism development2.79E-02
177GO:0006364: rRNA processing2.80E-02
178GO:0048511: rhythmic process2.90E-02
179GO:0061077: chaperone-mediated protein folding2.90E-02
180GO:0031348: negative regulation of defense response3.09E-02
181GO:0009814: defense response, incompatible interaction3.09E-02
182GO:2000022: regulation of jasmonic acid mediated signaling pathway3.09E-02
183GO:0006508: proteolysis3.12E-02
184GO:0009686: gibberellin biosynthetic process3.29E-02
185GO:0071369: cellular response to ethylene stimulus3.29E-02
186GO:0001944: vasculature development3.29E-02
187GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.29E-02
188GO:0009306: protein secretion3.49E-02
189GO:0048366: leaf development3.62E-02
190GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.70E-02
191GO:0008284: positive regulation of cell proliferation3.70E-02
192GO:0008033: tRNA processing3.91E-02
193GO:0048653: anther development3.91E-02
194GO:0005975: carbohydrate metabolic process4.04E-02
195GO:0006662: glycerol ether metabolic process4.12E-02
196GO:0010197: polar nucleus fusion4.12E-02
197GO:0010268: brassinosteroid homeostasis4.12E-02
198GO:0009958: positive gravitropism4.12E-02
199GO:0042752: regulation of circadian rhythm4.34E-02
200GO:0007059: chromosome segregation4.34E-02
201GO:0009646: response to absence of light4.34E-02
202GO:0009416: response to light stimulus4.44E-02
203GO:0015979: photosynthesis4.54E-02
204GO:0019252: starch biosynthetic process4.56E-02
205GO:0002229: defense response to oomycetes4.78E-02
206GO:0016132: brassinosteroid biosynthetic process4.78E-02
207GO:0000302: response to reactive oxygen species4.78E-02
RankGO TermAdjusted P value
1GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
2GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
3GO:0042903: tubulin deacetylase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004823: leucine-tRNA ligase activity0.00E+00
6GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
7GO:0004358: glutamate N-acetyltransferase activity0.00E+00
8GO:0005048: signal sequence binding0.00E+00
9GO:0004076: biotin synthase activity0.00E+00
10GO:0003937: IMP cyclohydrolase activity0.00E+00
11GO:0043136: glycerol-3-phosphatase activity0.00E+00
12GO:0000121: glycerol-1-phosphatase activity0.00E+00
13GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
14GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
15GO:0009029: tetraacyldisaccharide 4'-kinase activity0.00E+00
16GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
17GO:0050613: delta14-sterol reductase activity0.00E+00
18GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
19GO:0043014: alpha-tubulin binding0.00E+00
20GO:0051721: protein phosphatase 2A binding0.00E+00
21GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.54E-06
22GO:0016851: magnesium chelatase activity7.03E-05
23GO:0001053: plastid sigma factor activity1.23E-04
24GO:0016987: sigma factor activity1.23E-04
25GO:0030570: pectate lyase activity4.50E-04
26GO:0004853: uroporphyrinogen decarboxylase activity4.64E-04
27GO:0004832: valine-tRNA ligase activity4.64E-04
28GO:0052856: NADHX epimerase activity4.64E-04
29GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.64E-04
30GO:0052857: NADPHX epimerase activity4.64E-04
31GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.64E-04
32GO:0050139: nicotinate-N-glucosyltransferase activity4.64E-04
33GO:0005227: calcium activated cation channel activity4.64E-04
34GO:0004733: pyridoxamine-phosphate oxidase activity4.64E-04
35GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.64E-04
36GO:0051777: ent-kaurenoate oxidase activity4.64E-04
37GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.64E-04
38GO:0004813: alanine-tRNA ligase activity4.64E-04
39GO:0003747: translation release factor activity8.40E-04
40GO:0009977: proton motive force dependent protein transmembrane transporter activity1.00E-03
41GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.00E-03
42GO:0004817: cysteine-tRNA ligase activity1.00E-03
43GO:0009973: adenylyl-sulfate reductase activity1.00E-03
44GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.00E-03
45GO:0003919: FMN adenylyltransferase activity1.00E-03
46GO:0004829: threonine-tRNA ligase activity1.00E-03
47GO:0019156: isoamylase activity1.00E-03
48GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.00E-03
49GO:0004557: alpha-galactosidase activity1.63E-03
50GO:0052692: raffinose alpha-galactosidase activity1.63E-03
51GO:0015462: ATPase-coupled protein transmembrane transporter activity1.63E-03
52GO:0046524: sucrose-phosphate synthase activity1.63E-03
53GO:0003913: DNA photolyase activity1.63E-03
54GO:0002161: aminoacyl-tRNA editing activity1.63E-03
55GO:0016788: hydrolase activity, acting on ester bonds1.96E-03
56GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.37E-03
57GO:0043023: ribosomal large subunit binding2.37E-03
58GO:0001872: (1->3)-beta-D-glucan binding2.37E-03
59GO:0019201: nucleotide kinase activity2.37E-03
60GO:0048487: beta-tubulin binding2.37E-03
61GO:0016149: translation release factor activity, codon specific2.37E-03
62GO:0019199: transmembrane receptor protein kinase activity3.18E-03
63GO:0042277: peptide binding3.18E-03
64GO:0046556: alpha-L-arabinofuranosidase activity3.18E-03
65GO:0004659: prenyltransferase activity3.18E-03
66GO:0016279: protein-lysine N-methyltransferase activity3.18E-03
67GO:0004045: aminoacyl-tRNA hydrolase activity3.18E-03
68GO:0009044: xylan 1,4-beta-xylosidase activity3.18E-03
69GO:0004176: ATP-dependent peptidase activity3.28E-03
70GO:0003723: RNA binding3.82E-03
71GO:0004040: amidase activity4.08E-03
72GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.08E-03
73GO:0043621: protein self-association4.09E-03
74GO:0005525: GTP binding4.29E-03
75GO:0004812: aminoacyl-tRNA ligase activity4.62E-03
76GO:0042578: phosphoric ester hydrolase activity5.05E-03
77GO:0080030: methyl indole-3-acetate esterase activity5.05E-03
78GO:0004332: fructose-bisphosphate aldolase activity5.05E-03
79GO:0004526: ribonuclease P activity5.05E-03
80GO:0004556: alpha-amylase activity5.05E-03
81GO:0003924: GTPase activity5.51E-03
82GO:0003730: mRNA 3'-UTR binding6.09E-03
83GO:0004144: diacylglycerol O-acyltransferase activity6.09E-03
84GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.09E-03
85GO:0004017: adenylate kinase activity6.09E-03
86GO:0016832: aldehyde-lyase activity6.09E-03
87GO:0004519: endonuclease activity6.38E-03
88GO:0005338: nucleotide-sugar transmembrane transporter activity7.20E-03
89GO:0009881: photoreceptor activity7.20E-03
90GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor7.60E-03
91GO:0043022: ribosome binding8.39E-03
92GO:0008312: 7S RNA binding8.39E-03
93GO:0008237: metallopeptidase activity8.60E-03
94GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.63E-03
95GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)9.63E-03
96GO:0005381: iron ion transmembrane transporter activity1.23E-02
97GO:0016829: lyase activity1.25E-02
98GO:0004805: trehalose-phosphatase activity1.37E-02
99GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.47E-02
100GO:0008559: xenobiotic-transporting ATPase activity1.52E-02
101GO:0000049: tRNA binding1.68E-02
102GO:0051539: 4 iron, 4 sulfur cluster binding1.84E-02
103GO:0004565: beta-galactosidase activity1.84E-02
104GO:0008083: growth factor activity2.00E-02
105GO:0003743: translation initiation factor activity2.08E-02
106GO:0051537: 2 iron, 2 sulfur cluster binding2.25E-02
107GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.35E-02
108GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.35E-02
109GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.35E-02
110GO:0003714: transcription corepressor activity2.53E-02
111GO:0051536: iron-sulfur cluster binding2.53E-02
112GO:0004407: histone deacetylase activity2.53E-02
113GO:0005528: FK506 binding2.53E-02
114GO:0051087: chaperone binding2.71E-02
115GO:0015079: potassium ion transmembrane transporter activity2.71E-02
116GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.80E-02
117GO:0005524: ATP binding3.52E-02
118GO:0047134: protein-disulfide reductase activity3.70E-02
119GO:0022857: transmembrane transporter activity3.76E-02
120GO:0008536: Ran GTPase binding4.12E-02
121GO:0010181: FMN binding4.34E-02
122GO:0004791: thioredoxin-disulfide reductase activity4.34E-02
123GO:0052689: carboxylic ester hydrolase activity4.37E-02
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Gene type



Gene DE type