Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G55370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030155: regulation of cell adhesion0.00E+00
2GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
3GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
4GO:0031116: positive regulation of microtubule polymerization0.00E+00
5GO:0010068: protoderm histogenesis0.00E+00
6GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
7GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:1905177: tracheary element differentiation0.00E+00
10GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
11GO:0097164: ammonium ion metabolic process0.00E+00
12GO:0015843: methylammonium transport0.00E+00
13GO:0031222: arabinan catabolic process0.00E+00
14GO:0070979: protein K11-linked ubiquitination0.00E+00
15GO:1905421: regulation of plant organ morphogenesis0.00E+00
16GO:0043488: regulation of mRNA stability0.00E+00
17GO:0061157: mRNA destabilization0.00E+00
18GO:0009734: auxin-activated signaling pathway1.37E-10
19GO:0009733: response to auxin1.81E-10
20GO:0046620: regulation of organ growth2.08E-10
21GO:0040008: regulation of growth2.87E-07
22GO:0009926: auxin polar transport4.67E-06
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.88E-05
24GO:0006468: protein phosphorylation3.39E-04
25GO:0005992: trehalose biosynthetic process6.71E-04
26GO:0051171: regulation of nitrogen compound metabolic process7.34E-04
27GO:0051418: microtubule nucleation by microtubule organizing center7.34E-04
28GO:0070509: calcium ion import7.34E-04
29GO:0010480: microsporocyte differentiation7.34E-04
30GO:0006264: mitochondrial DNA replication7.34E-04
31GO:0033259: plastid DNA replication7.34E-04
32GO:0034080: CENP-A containing nucleosome assembly7.34E-04
33GO:0000066: mitochondrial ornithine transport7.34E-04
34GO:0048528: post-embryonic root development9.05E-04
35GO:0007275: multicellular organism development9.34E-04
36GO:0007166: cell surface receptor signaling pathway1.00E-03
37GO:0007389: pattern specification process1.37E-03
38GO:0033566: gamma-tubulin complex localization1.58E-03
39GO:1900871: chloroplast mRNA modification1.58E-03
40GO:0070981: L-asparagine biosynthetic process1.58E-03
41GO:0007154: cell communication1.58E-03
42GO:0071497: cellular response to freezing1.58E-03
43GO:1900033: negative regulation of trichome patterning1.58E-03
44GO:0006423: cysteinyl-tRNA aminoacylation1.58E-03
45GO:0009786: regulation of asymmetric cell division1.58E-03
46GO:0006529: asparagine biosynthetic process1.58E-03
47GO:2000123: positive regulation of stomatal complex development1.58E-03
48GO:0015804: neutral amino acid transport1.58E-03
49GO:0000373: Group II intron splicing1.64E-03
50GO:0009658: chloroplast organization1.83E-03
51GO:0009638: phototropism1.95E-03
52GO:1900865: chloroplast RNA modification1.95E-03
53GO:0032502: developmental process2.31E-03
54GO:0048281: inflorescence morphogenesis2.62E-03
55GO:0051127: positive regulation of actin nucleation2.62E-03
56GO:0006954: inflammatory response2.62E-03
57GO:0031145: anaphase-promoting complex-dependent catabolic process2.62E-03
58GO:0010623: programmed cell death involved in cell development2.62E-03
59GO:0051604: protein maturation2.62E-03
60GO:0001578: microtubule bundle formation2.62E-03
61GO:0016050: vesicle organization2.62E-03
62GO:0007052: mitotic spindle organization2.62E-03
63GO:0009089: lysine biosynthetic process via diaminopimelate2.64E-03
64GO:0010252: auxin homeostasis2.72E-03
65GO:2000012: regulation of auxin polar transport3.45E-03
66GO:0009767: photosynthetic electron transport chain3.45E-03
67GO:0009226: nucleotide-sugar biosynthetic process3.81E-03
68GO:0048645: animal organ formation3.81E-03
69GO:0044211: CTP salvage3.81E-03
70GO:0019048: modulation by virus of host morphology or physiology3.81E-03
71GO:0010255: glucose mediated signaling pathway3.81E-03
72GO:0015696: ammonium transport3.81E-03
73GO:0046739: transport of virus in multicellular host3.81E-03
74GO:0032981: mitochondrial respiratory chain complex I assembly3.81E-03
75GO:0090307: mitotic spindle assembly3.81E-03
76GO:2000904: regulation of starch metabolic process3.81E-03
77GO:0031048: chromatin silencing by small RNA3.81E-03
78GO:0043572: plastid fission3.81E-03
79GO:0010148: transpiration3.81E-03
80GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.81E-03
81GO:0034508: centromere complex assembly3.81E-03
82GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.81E-03
83GO:0009067: aspartate family amino acid biosynthetic process3.81E-03
84GO:0051513: regulation of monopolar cell growth3.81E-03
85GO:0007231: osmosensory signaling pathway3.81E-03
86GO:0030071: regulation of mitotic metaphase/anaphase transition3.81E-03
87GO:0051639: actin filament network formation3.81E-03
88GO:0010020: chloroplast fission3.90E-03
89GO:0090351: seedling development4.38E-03
90GO:0070588: calcium ion transmembrane transport4.38E-03
91GO:0009740: gibberellic acid mediated signaling pathway4.54E-03
92GO:0071555: cell wall organization4.89E-03
93GO:0000160: phosphorelay signal transduction system5.12E-03
94GO:0051322: anaphase5.15E-03
95GO:0033500: carbohydrate homeostasis5.15E-03
96GO:2000038: regulation of stomatal complex development5.15E-03
97GO:0072488: ammonium transmembrane transport5.15E-03
98GO:0022622: root system development5.15E-03
99GO:0051567: histone H3-K9 methylation5.15E-03
100GO:0010508: positive regulation of autophagy5.15E-03
101GO:0007020: microtubule nucleation5.15E-03
102GO:0044206: UMP salvage5.15E-03
103GO:0009165: nucleotide biosynthetic process5.15E-03
104GO:1901141: regulation of lignin biosynthetic process5.15E-03
105GO:0048629: trichome patterning5.15E-03
106GO:0051764: actin crosslink formation5.15E-03
107GO:0009944: polarity specification of adaxial/abaxial axis5.43E-03
108GO:0010187: negative regulation of seed germination5.43E-03
109GO:0009742: brassinosteroid mediated signaling pathway5.44E-03
110GO:0010158: abaxial cell fate specification6.62E-03
111GO:0032876: negative regulation of DNA endoreduplication6.62E-03
112GO:0010375: stomatal complex patterning6.62E-03
113GO:0046785: microtubule polymerization6.62E-03
114GO:0006544: glycine metabolic process6.62E-03
115GO:1902183: regulation of shoot apical meristem development6.62E-03
116GO:0016123: xanthophyll biosynthetic process6.62E-03
117GO:0031348: negative regulation of defense response7.24E-03
118GO:0006839: mitochondrial transport7.71E-03
119GO:0009686: gibberellin biosynthetic process7.91E-03
120GO:0006655: phosphatidylglycerol biosynthetic process8.23E-03
121GO:0006139: nucleobase-containing compound metabolic process8.23E-03
122GO:0016554: cytidine to uridine editing8.23E-03
123GO:0016458: gene silencing8.23E-03
124GO:0006206: pyrimidine nucleobase metabolic process8.23E-03
125GO:0018258: protein O-linked glycosylation via hydroxyproline8.23E-03
126GO:0006563: L-serine metabolic process8.23E-03
127GO:0000741: karyogamy8.23E-03
128GO:0009228: thiamine biosynthetic process8.23E-03
129GO:0010405: arabinogalactan protein metabolic process8.23E-03
130GO:0009959: negative gravitropism8.23E-03
131GO:0009789: positive regulation of abscisic acid-activated signaling pathway9.35E-03
132GO:0042372: phylloquinone biosynthetic process9.97E-03
133GO:0009942: longitudinal axis specification9.97E-03
134GO:0030488: tRNA methylation9.97E-03
135GO:2000033: regulation of seed dormancy process9.97E-03
136GO:0009088: threonine biosynthetic process9.97E-03
137GO:0080086: stamen filament development9.97E-03
138GO:0010087: phloem or xylem histogenesis1.01E-02
139GO:0009958: positive gravitropism1.09E-02
140GO:0006855: drug transmembrane transport1.10E-02
141GO:0007623: circadian rhythm1.15E-02
142GO:0070370: cellular heat acclimation1.18E-02
143GO:0010050: vegetative phase change1.18E-02
144GO:0048437: floral organ development1.18E-02
145GO:0010444: guard mother cell differentiation1.18E-02
146GO:0030307: positive regulation of cell growth1.18E-02
147GO:0010103: stomatal complex morphogenesis1.18E-02
148GO:0032880: regulation of protein localization1.18E-02
149GO:0010161: red light signaling pathway1.18E-02
150GO:0009610: response to symbiotic fungus1.18E-02
151GO:0009736: cytokinin-activated signaling pathway1.33E-02
152GO:0006402: mRNA catabolic process1.38E-02
153GO:0009850: auxin metabolic process1.38E-02
154GO:0009690: cytokinin metabolic process1.38E-02
155GO:0009787: regulation of abscisic acid-activated signaling pathway1.38E-02
156GO:0010078: maintenance of root meristem identity1.38E-02
157GO:0009704: de-etiolation1.38E-02
158GO:0032875: regulation of DNA endoreduplication1.38E-02
159GO:0042255: ribosome assembly1.38E-02
160GO:0006353: DNA-templated transcription, termination1.38E-02
161GO:0070413: trehalose metabolism in response to stress1.38E-02
162GO:0010583: response to cyclopentenone1.45E-02
163GO:0001558: regulation of cell growth1.59E-02
164GO:0009827: plant-type cell wall modification1.59E-02
165GO:0010100: negative regulation of photomorphogenesis1.59E-02
166GO:0010497: plasmodesmata-mediated intercellular transport1.59E-02
167GO:0009657: plastid organization1.59E-02
168GO:0032544: plastid translation1.59E-02
169GO:0043562: cellular response to nitrogen levels1.59E-02
170GO:0010099: regulation of photomorphogenesis1.59E-02
171GO:0006002: fructose 6-phosphate metabolic process1.59E-02
172GO:0048367: shoot system development1.71E-02
173GO:0009051: pentose-phosphate shunt, oxidative branch1.80E-02
174GO:2000024: regulation of leaf development1.80E-02
175GO:0006783: heme biosynthetic process1.80E-02
176GO:0000902: cell morphogenesis1.80E-02
177GO:0051607: defense response to virus1.86E-02
178GO:0006355: regulation of transcription, DNA-templated1.91E-02
179GO:0042761: very long-chain fatty acid biosynthetic process2.03E-02
180GO:0035999: tetrahydrofolate interconversion2.03E-02
181GO:0010380: regulation of chlorophyll biosynthetic process2.03E-02
182GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.03E-02
183GO:0031425: chloroplast RNA processing2.03E-02
184GO:0071577: zinc II ion transmembrane transport2.03E-02
185GO:0016310: phosphorylation2.10E-02
186GO:0009627: systemic acquired resistance2.20E-02
187GO:0009299: mRNA transcription2.27E-02
188GO:0010162: seed dormancy process2.27E-02
189GO:0006535: cysteine biosynthetic process from serine2.27E-02
190GO:0030422: production of siRNA involved in RNA interference2.27E-02
191GO:0048829: root cap development2.27E-02
192GO:0045036: protein targeting to chloroplast2.27E-02
193GO:0009641: shade avoidance2.27E-02
194GO:0006949: syncytium formation2.27E-02
195GO:0006259: DNA metabolic process2.27E-02
196GO:0006265: DNA topological change2.52E-02
197GO:0006816: calcium ion transport2.52E-02
198GO:1903507: negative regulation of nucleic acid-templated transcription2.52E-02
199GO:0048229: gametophyte development2.52E-02
200GO:0006415: translational termination2.52E-02
201GO:0009684: indoleacetic acid biosynthetic process2.52E-02
202GO:0010015: root morphogenesis2.52E-02
203GO:0016024: CDP-diacylglycerol biosynthetic process2.77E-02
204GO:0010582: floral meristem determinacy2.77E-02
205GO:0006810: transport2.92E-02
206GO:0048527: lateral root development2.97E-02
207GO:0010588: cotyledon vascular tissue pattern formation3.04E-02
208GO:0006006: glucose metabolic process3.04E-02
209GO:0009785: blue light signaling pathway3.04E-02
210GO:0030036: actin cytoskeleton organization3.04E-02
211GO:0050826: response to freezing3.04E-02
212GO:0010075: regulation of meristem growth3.04E-02
213GO:0009725: response to hormone3.04E-02
214GO:0080167: response to karrikin3.05E-02
215GO:0006865: amino acid transport3.12E-02
216GO:0048467: gynoecium development3.31E-02
217GO:0010207: photosystem II assembly3.31E-02
218GO:0006541: glutamine metabolic process3.31E-02
219GO:0009934: regulation of meristem structural organization3.31E-02
220GO:0030154: cell differentiation3.52E-02
221GO:0010030: positive regulation of seed germination3.59E-02
222GO:0006631: fatty acid metabolic process3.87E-02
223GO:0006897: endocytosis3.87E-02
224GO:0010025: wax biosynthetic process3.88E-02
225GO:0009833: plant-type primary cell wall biogenesis3.88E-02
226GO:0006071: glycerol metabolic process3.88E-02
227GO:0006833: water transport3.88E-02
228GO:0051017: actin filament bundle assembly4.18E-02
229GO:0030150: protein import into mitochondrial matrix4.18E-02
230GO:0007010: cytoskeleton organization4.18E-02
231GO:0019344: cysteine biosynthetic process4.18E-02
232GO:0008283: cell proliferation4.20E-02
233GO:0006418: tRNA aminoacylation for protein translation4.48E-02
234GO:0043622: cortical microtubule organization4.48E-02
235GO:0006825: copper ion transport4.48E-02
236GO:0051302: regulation of cell division4.48E-02
237GO:0009965: leaf morphogenesis4.71E-02
238GO:0006306: DNA methylation4.79E-02
239GO:0003333: amino acid transmembrane transport4.79E-02
240GO:0016998: cell wall macromolecule catabolic process4.79E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0019136: deoxynucleoside kinase activity0.00E+00
4GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.44E-04
5GO:0004805: trehalose-phosphatase activity2.08E-04
6GO:0019199: transmembrane receptor protein kinase activity2.57E-04
7GO:0051777: ent-kaurenoate oxidase activity7.34E-04
8GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.34E-04
9GO:0005290: L-histidine transmembrane transporter activity7.34E-04
10GO:0004008: copper-exporting ATPase activity7.34E-04
11GO:0004071: aspartate-ammonia ligase activity7.34E-04
12GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.34E-04
13GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.34E-04
14GO:0010285: L,L-diaminopimelate aminotransferase activity7.34E-04
15GO:0010313: phytochrome binding7.34E-04
16GO:0050139: nicotinate-N-glucosyltransferase activity7.34E-04
17GO:0004817: cysteine-tRNA ligase activity1.58E-03
18GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.58E-03
19GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.58E-03
20GO:0000064: L-ornithine transmembrane transporter activity1.58E-03
21GO:0015929: hexosaminidase activity1.58E-03
22GO:0004563: beta-N-acetylhexosaminidase activity1.58E-03
23GO:0015172: acidic amino acid transmembrane transporter activity1.58E-03
24GO:0050017: L-3-cyanoalanine synthase activity1.58E-03
25GO:0017118: lipoyltransferase activity1.58E-03
26GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.58E-03
27GO:0043425: bHLH transcription factor binding1.58E-03
28GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.58E-03
29GO:0016301: kinase activity1.79E-03
30GO:0009672: auxin:proton symporter activity1.95E-03
31GO:0043621: protein self-association2.06E-03
32GO:0004674: protein serine/threonine kinase activity2.08E-03
33GO:0000156: phosphorelay response regulator activity2.51E-03
34GO:0070330: aromatase activity2.62E-03
35GO:0004557: alpha-galactosidase activity2.62E-03
36GO:0052692: raffinose alpha-galactosidase activity2.62E-03
37GO:0070180: large ribosomal subunit rRNA binding2.62E-03
38GO:0010329: auxin efflux transmembrane transporter activity3.45E-03
39GO:0005262: calcium channel activity3.45E-03
40GO:0004072: aspartate kinase activity3.81E-03
41GO:0015175: neutral amino acid transmembrane transporter activity3.81E-03
42GO:0017172: cysteine dioxygenase activity3.81E-03
43GO:0015181: arginine transmembrane transporter activity3.81E-03
44GO:0035197: siRNA binding3.81E-03
45GO:0015189: L-lysine transmembrane transporter activity3.81E-03
46GO:0015238: drug transmembrane transporter activity5.12E-03
47GO:0080032: methyl jasmonate esterase activity5.15E-03
48GO:0043015: gamma-tubulin binding5.15E-03
49GO:0042277: peptide binding5.15E-03
50GO:0046556: alpha-L-arabinofuranosidase activity5.15E-03
51GO:0004845: uracil phosphoribosyltransferase activity5.15E-03
52GO:0004345: glucose-6-phosphate dehydrogenase activity5.15E-03
53GO:0008409: 5'-3' exonuclease activity5.15E-03
54GO:0005215: transporter activity6.31E-03
55GO:0004372: glycine hydroxymethyltransferase activity6.62E-03
56GO:0016846: carbon-sulfur lyase activity6.62E-03
57GO:0018685: alkane 1-monooxygenase activity6.62E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor6.62E-03
59GO:0016208: AMP binding8.23E-03
60GO:0042578: phosphoric ester hydrolase activity8.23E-03
61GO:0008519: ammonium transmembrane transporter activity8.23E-03
62GO:0004605: phosphatidate cytidylyltransferase activity8.23E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity8.23E-03
64GO:0003727: single-stranded RNA binding8.61E-03
65GO:0004849: uridine kinase activity9.97E-03
66GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.97E-03
67GO:0003730: mRNA 3'-UTR binding9.97E-03
68GO:0004656: procollagen-proline 4-dioxygenase activity9.97E-03
69GO:0004124: cysteine synthase activity9.97E-03
70GO:0008195: phosphatidate phosphatase activity9.97E-03
71GO:0008536: Ran GTPase binding1.09E-02
72GO:0019899: enzyme binding1.18E-02
73GO:0003872: 6-phosphofructokinase activity1.18E-02
74GO:0004672: protein kinase activity1.28E-02
75GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.59E-02
76GO:0005375: copper ion transmembrane transporter activity1.59E-02
77GO:0016759: cellulose synthase activity1.64E-02
78GO:0008483: transaminase activity1.75E-02
79GO:0008889: glycerophosphodiester phosphodiesterase activity1.80E-02
80GO:0003747: translation release factor activity1.80E-02
81GO:0005524: ATP binding1.81E-02
82GO:0016597: amino acid binding1.86E-02
83GO:0004713: protein tyrosine kinase activity2.27E-02
84GO:0016788: hydrolase activity, acting on ester bonds2.28E-02
85GO:0005089: Rho guanyl-nucleotide exchange factor activity2.52E-02
86GO:0008327: methyl-CpG binding2.52E-02
87GO:0004521: endoribonuclease activity2.77E-02
88GO:0044212: transcription regulatory region DNA binding2.96E-02
89GO:0003725: double-stranded RNA binding3.04E-02
90GO:0016829: lyase activity3.04E-02
91GO:0015266: protein channel activity3.04E-02
92GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.04E-02
93GO:0004089: carbonate dehydratase activity3.04E-02
94GO:0009982: pseudouridine synthase activity3.04E-02
95GO:0030170: pyridoxal phosphate binding3.14E-02
96GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.31E-02
97GO:0008083: growth factor activity3.31E-02
98GO:0003723: RNA binding3.71E-02
99GO:0042393: histone binding3.71E-02
100GO:0003887: DNA-directed DNA polymerase activity3.88E-02
101GO:0015297: antiporter activity3.88E-02
102GO:0005528: FK506 binding4.18E-02
103GO:0003714: transcription corepressor activity4.18E-02
104GO:0031418: L-ascorbic acid binding4.18E-02
105GO:0005385: zinc ion transmembrane transporter activity4.18E-02
106GO:0004857: enzyme inhibitor activity4.18E-02
107GO:0004185: serine-type carboxypeptidase activity4.20E-02
108GO:0042803: protein homodimerization activity4.24E-02
109GO:0008017: microtubule binding4.35E-02
110GO:0008324: cation transmembrane transporter activity4.48E-02
111GO:0005345: purine nucleobase transmembrane transporter activity4.48E-02
112GO:0035251: UDP-glucosyltransferase activity4.79E-02
113GO:0004176: ATP-dependent peptidase activity4.79E-02
114GO:0033612: receptor serine/threonine kinase binding4.79E-02
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Gene type



Gene DE type