co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G55360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
2	GO:0071474: cellular hyperosmotic response	0.00E+00
3	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
7	GO:0031054: pre-miRNA processing	0.00E+00
8	GO:0090279: regulation of calcium ion import	0.00E+00
9	GO:2001294: malonyl-CoA catabolic process	0.00E+00
10	GO:0007155: cell adhesion	1.22E-05
11	GO:0006021: inositol biosynthetic process	7.90E-05
12	GO:0010143: cutin biosynthetic process	9.75E-05
13	GO:1902183: regulation of shoot apical meristem development	1.23E-04
14	GO:0010158: abaxial cell fate specification	1.23E-04
15	GO:0045038: protein import into chloroplast thylakoid membrane	1.23E-04
16	GO:0043686: co-translational protein modification	3.57E-04
17	GO:0071461: cellular response to redox state	3.57E-04
18	GO:0046167: glycerol-3-phosphate biosynthetic process	3.57E-04
19	GO:1902458: positive regulation of stomatal opening	3.57E-04
20	GO:0034337: RNA folding	3.57E-04
21	GO:0010450: inflorescence meristem growth	3.57E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	3.57E-04
23	GO:0015969: guanosine tetraphosphate metabolic process	3.57E-04
24	GO:0031426: polycistronic mRNA processing	3.57E-04
25	GO:0000481: maturation of 5S rRNA	3.57E-04
26	GO:0006659: phosphatidylserine biosynthetic process	3.57E-04
27	GO:2000024: regulation of leaf development	5.76E-04
28	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.80E-04
29	GO:0010155: regulation of proton transport	7.77E-04
30	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.77E-04
31	GO:0051262: protein tetramerization	7.77E-04
32	GO:0080005: photosystem stoichiometry adjustment	7.77E-04
33	GO:1900871: chloroplast mRNA modification	7.77E-04
34	GO:0030187: melatonin biosynthetic process	7.77E-04
35	GO:0010541: acropetal auxin transport	7.77E-04
36	GO:0007154: cell communication	7.77E-04
37	GO:0006650: glycerophospholipid metabolic process	7.77E-04
38	GO:0009641: shade avoidance	7.93E-04
39	GO:0010192: mucilage biosynthetic process	7.93E-04
40	GO:0016024: CDP-diacylglycerol biosynthetic process	1.04E-03
41	GO:0055114: oxidation-reduction process	1.06E-03
42	GO:0045165: cell fate commitment	1.26E-03
43	GO:0046168: glycerol-3-phosphate catabolic process	1.26E-03
44	GO:0009405: pathogenesis	1.26E-03
45	GO:0010589: leaf proximal/distal pattern formation	1.26E-03
46	GO:0010160: formation of animal organ boundary	1.26E-03
47	GO:0080055: low-affinity nitrate transport	1.26E-03
48	GO:0006753: nucleoside phosphate metabolic process	1.26E-03
49	GO:0010207: photosystem II assembly	1.33E-03
50	GO:0048527: lateral root development	1.44E-03
51	GO:0009637: response to blue light	1.62E-03
52	GO:0042753: positive regulation of circadian rhythm	1.66E-03
53	GO:2001141: regulation of RNA biosynthetic process	1.81E-03
54	GO:0006166: purine ribonucleoside salvage	1.81E-03
55	GO:0010239: chloroplast mRNA processing	1.81E-03
56	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.81E-03
57	GO:0006072: glycerol-3-phosphate metabolic process	1.81E-03
58	GO:0009647: skotomorphogenesis	1.81E-03
59	GO:0046739: transport of virus in multicellular host	1.81E-03
60	GO:0006164: purine nucleotide biosynthetic process	1.81E-03
61	GO:0009963: positive regulation of flavonoid biosynthetic process	1.81E-03
62	GO:1990019: protein storage vacuole organization	1.81E-03
63	GO:0006168: adenine salvage	1.81E-03
64	GO:0009944: polarity specification of adaxial/abaxial axis	1.83E-03
65	GO:0006631: fatty acid metabolic process	2.02E-03
66	GO:0048442: sepal development	2.44E-03
67	GO:2000306: positive regulation of photomorphogenesis	2.44E-03
68	GO:0035279: mRNA cleavage involved in gene silencing by miRNA	2.44E-03
69	GO:0009649: entrainment of circadian clock	2.44E-03
70	GO:0008295: spermidine biosynthetic process	2.44E-03
71	GO:0032366: intracellular sterol transport	2.44E-03
72	GO:0048443: stamen development	2.89E-03
73	GO:0031365: N-terminal protein amino acid modification	3.11E-03
74	GO:0044209: AMP salvage	3.11E-03
75	GO:0034052: positive regulation of plant-type hypersensitive response	3.11E-03
76	GO:0046283: anthocyanin-containing compound metabolic process	3.11E-03
77	GO:0009904: chloroplast accumulation movement	3.11E-03
78	GO:0010236: plastoquinone biosynthetic process	3.11E-03
79	GO:0009585: red, far-red light phototransduction	3.28E-03
80	GO:0009958: positive gravitropism	3.64E-03
81	GO:0010154: fruit development	3.64E-03
82	GO:0006751: glutathione catabolic process	3.85E-03
83	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.85E-03
84	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.85E-03
85	GO:0006655: phosphatidylglycerol biosynthetic process	3.85E-03
86	GO:0045962: positive regulation of development, heterochronic	3.85E-03
87	GO:0060918: auxin transport	3.85E-03
88	GO:0000741: karyogamy	3.85E-03
89	GO:0046855: inositol phosphate dephosphorylation	3.85E-03
90	GO:0007018: microtubule-based movement	3.92E-03
91	GO:0008654: phospholipid biosynthetic process	4.20E-03
92	GO:0009791: post-embryonic development	4.20E-03
93	GO:0009903: chloroplast avoidance movement	4.64E-03
94	GO:0030488: tRNA methylation	4.64E-03
95	GO:0009648: photoperiodism	4.64E-03
96	GO:0042372: phylloquinone biosynthetic process	4.64E-03
97	GO:0010076: maintenance of floral meristem identity	4.64E-03
98	GO:0048280: vesicle fusion with Golgi apparatus	4.64E-03
99	GO:0010583: response to cyclopentenone	4.81E-03
100	GO:0009639: response to red or far red light	5.46E-03
101	GO:0035196: production of miRNAs involved in gene silencing by miRNA	5.48E-03
102	GO:0009395: phospholipid catabolic process	5.48E-03
103	GO:0015937: coenzyme A biosynthetic process	5.48E-03
104	GO:2000070: regulation of response to water deprivation	6.37E-03
105	GO:0016559: peroxisome fission	6.37E-03
106	GO:0043068: positive regulation of programmed cell death	6.37E-03
107	GO:0010078: maintenance of root meristem identity	6.37E-03
108	GO:0032508: DNA duplex unwinding	6.37E-03
109	GO:0044550: secondary metabolite biosynthetic process	6.64E-03
110	GO:0043562: cellular response to nitrogen levels	7.30E-03
111	GO:0010093: specification of floral organ identity	7.30E-03
112	GO:0009932: cell tip growth	7.30E-03
113	GO:0071482: cellular response to light stimulus	7.30E-03
114	GO:0015996: chlorophyll catabolic process	7.30E-03
115	GO:0007186: G-protein coupled receptor signaling pathway	7.30E-03
116	GO:0009416: response to light stimulus	7.52E-03
117	GO:0006189: 'de novo' IMP biosynthetic process	8.29E-03
118	GO:0010206: photosystem II repair	8.29E-03
119	GO:0048507: meristem development	8.29E-03
120	GO:0009638: phototropism	9.31E-03
121	GO:0010267: production of ta-siRNAs involved in RNA interference	9.31E-03
122	GO:0010018: far-red light signaling pathway	9.31E-03
123	GO:1900865: chloroplast RNA modification	9.31E-03
124	GO:0006811: ion transport	9.39E-03
125	GO:0010119: regulation of stomatal movement	9.85E-03
126	GO:0043069: negative regulation of programmed cell death	1.04E-02
127	GO:0006896: Golgi to vacuole transport	1.04E-02
128	GO:0048441: petal development	1.04E-02
129	GO:0006535: cysteine biosynthetic process from serine	1.04E-02
130	GO:0018119: peptidyl-cysteine S-nitrosylation	1.15E-02
131	GO:0009684: indoleacetic acid biosynthetic process	1.15E-02
132	GO:0000038: very long-chain fatty acid metabolic process	1.15E-02
133	GO:0006352: DNA-templated transcription, initiation	1.15E-02
134	GO:0008361: regulation of cell size	1.27E-02
135	GO:0006790: sulfur compound metabolic process	1.27E-02
136	GO:0045037: protein import into chloroplast stroma	1.27E-02
137	GO:0030036: actin cytoskeleton organization	1.39E-02
138	GO:0009718: anthocyanin-containing compound biosynthetic process	1.39E-02
139	GO:0009767: photosynthetic electron transport chain	1.39E-02
140	GO:0010588: cotyledon vascular tissue pattern formation	1.39E-02
141	GO:0030048: actin filament-based movement	1.39E-02
142	GO:0009785: blue light signaling pathway	1.39E-02
143	GO:0006006: glucose metabolic process	1.39E-02
144	GO:0009640: photomorphogenesis	1.40E-02
145	GO:0010223: secondary shoot formation	1.51E-02
146	GO:0009887: animal organ morphogenesis	1.51E-02
147	GO:0010540: basipetal auxin transport	1.51E-02
148	GO:0048467: gynoecium development	1.51E-02
149	GO:0048440: carpel development	1.51E-02
150	GO:0006541: glutamine metabolic process	1.51E-02
151	GO:0010020: chloroplast fission	1.51E-02
152	GO:0009933: meristem structural organization	1.51E-02
153	GO:0019253: reductive pentose-phosphate cycle	1.51E-02
154	GO:0046854: phosphatidylinositol phosphorylation	1.64E-02
155	GO:0042343: indole glucosinolate metabolic process	1.64E-02
156	GO:0009825: multidimensional cell growth	1.64E-02
157	GO:0019853: L-ascorbic acid biosynthetic process	1.64E-02
158	GO:0000162: tryptophan biosynthetic process	1.77E-02
159	GO:0010025: wax biosynthetic process	1.77E-02
160	GO:0019344: cysteine biosynthetic process	1.90E-02
161	GO:0000027: ribosomal large subunit assembly	1.90E-02
162	GO:0007010: cytoskeleton organization	1.90E-02
163	GO:0006857: oligopeptide transport	2.02E-02
164	GO:0008299: isoprenoid biosynthetic process	2.04E-02
165	GO:0007017: microtubule-based process	2.04E-02
166	GO:0048511: rhythmic process	2.18E-02
167	GO:0098542: defense response to other organism	2.18E-02
168	GO:0019915: lipid storage	2.18E-02
169	GO:0019748: secondary metabolic process	2.33E-02
170	GO:0009814: defense response, incompatible interaction	2.33E-02
171	GO:0035428: hexose transmembrane transport	2.33E-02
172	GO:0071369: cellular response to ethylene stimulus	2.48E-02
173	GO:0071215: cellular response to abscisic acid stimulus	2.48E-02
174	GO:0009294: DNA mediated transformation	2.48E-02
175	GO:0019722: calcium-mediated signaling	2.63E-02
176	GO:0042147: retrograde transport, endosome to Golgi	2.79E-02
177	GO:0010087: phloem or xylem histogenesis	2.95E-02
178	GO:0080022: primary root development	2.95E-02
179	GO:0010197: polar nucleus fusion	3.11E-02
180	GO:0010182: sugar mediated signaling pathway	3.11E-02
181	GO:0046323: glucose import	3.11E-02
182	GO:0045489: pectin biosynthetic process	3.11E-02
183	GO:0006520: cellular amino acid metabolic process	3.11E-02
184	GO:0010305: leaf vascular tissue pattern formation	3.11E-02
185	GO:0009851: auxin biosynthetic process	3.44E-02
186	GO:0006623: protein targeting to vacuole	3.44E-02
187	GO:0010183: pollen tube guidance	3.44E-02
188	GO:0048825: cotyledon development	3.44E-02
189	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.61E-02
190	GO:0006891: intra-Golgi vesicle-mediated transport	3.61E-02
191	GO:0007264: small GTPase mediated signal transduction	3.78E-02
192	GO:0016032: viral process	3.78E-02
193	GO:0030163: protein catabolic process	3.96E-02
194	GO:0006464: cellular protein modification process	4.14E-02
195	GO:0006633: fatty acid biosynthetic process	4.22E-02
196	GO:0007267: cell-cell signaling	4.32E-02
197	GO:0045490: pectin catabolic process	4.63E-02
198	GO:0007623: circadian rhythm	4.63E-02
199	GO:0010027: thylakoid membrane organization	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0036033: mediator complex binding	0.00E+00
3	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
4	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
5	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
7	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
8	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
9	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
10	GO:0008017: microtubule binding	7.64E-05
11	GO:0000293: ferric-chelate reductase activity	1.78E-04
12	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.78E-04
13	GO:0004328: formamidase activity	3.57E-04
14	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.57E-04
15	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	3.57E-04
16	GO:0005227: calcium activated cation channel activity	3.57E-04
17	GO:0010945: CoA pyrophosphatase activity	3.57E-04
18	GO:0080132: fatty acid alpha-hydroxylase activity	3.57E-04
19	GO:0042586: peptide deformylase activity	3.57E-04
20	GO:0031957: very long-chain fatty acid-CoA ligase activity	3.57E-04
21	GO:0016491: oxidoreductase activity	5.77E-04
22	GO:0003777: microtubule motor activity	6.45E-04
23	GO:0050017: L-3-cyanoalanine synthase activity	7.77E-04
24	GO:0017118: lipoyltransferase activity	7.77E-04
25	GO:0080045: quercetin 3'-O-glucosyltransferase activity	7.77E-04
26	GO:0003839: gamma-glutamylcyclotransferase activity	7.77E-04
27	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.77E-04
28	GO:0004766: spermidine synthase activity	7.77E-04
29	GO:0052832: inositol monophosphate 3-phosphatase activity	7.77E-04
30	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	7.77E-04
31	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.77E-04
32	GO:0008934: inositol monophosphate 1-phosphatase activity	7.77E-04
33	GO:0052833: inositol monophosphate 4-phosphatase activity	7.77E-04
34	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	7.77E-04
35	GO:0015929: hexosaminidase activity	7.77E-04
36	GO:0004563: beta-N-acetylhexosaminidase activity	7.77E-04
37	GO:0004512: inositol-3-phosphate synthase activity	7.77E-04
38	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	7.77E-04
39	GO:0048531: beta-1,3-galactosyltransferase activity	7.77E-04
40	GO:0008728: GTP diphosphokinase activity	7.77E-04
41	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.26E-03
42	GO:0070402: NADPH binding	1.26E-03
43	GO:0004049: anthranilate synthase activity	1.26E-03
44	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.26E-03
45	GO:0050734: hydroxycinnamoyltransferase activity	1.26E-03
46	GO:0005504: fatty acid binding	1.26E-03
47	GO:0003913: DNA photolyase activity	1.26E-03
48	GO:0004148: dihydrolipoyl dehydrogenase activity	1.26E-03
49	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.26E-03
50	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.33E-03
51	GO:0003993: acid phosphatase activity	1.72E-03
52	GO:0009882: blue light photoreceptor activity	1.81E-03
53	GO:0035198: miRNA binding	1.81E-03
54	GO:0048027: mRNA 5'-UTR binding	1.81E-03
55	GO:0003999: adenine phosphoribosyltransferase activity	1.81E-03
56	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.81E-03
57	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.81E-03
58	GO:0001053: plastid sigma factor activity	2.44E-03
59	GO:0016987: sigma factor activity	2.44E-03
60	GO:0045430: chalcone isomerase activity	2.44E-03
61	GO:0030570: pectate lyase activity	2.66E-03
62	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.11E-03
63	GO:0016846: carbon-sulfur lyase activity	3.11E-03
64	GO:0042802: identical protein binding	3.12E-03
65	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.85E-03
66	GO:0080046: quercetin 4'-O-glucosyltransferase activity	3.85E-03
67	GO:0000210: NAD+ diphosphatase activity	3.85E-03
68	GO:0035673: oligopeptide transmembrane transporter activity	3.85E-03
69	GO:0016208: AMP binding	3.85E-03
70	GO:0042578: phosphoric ester hydrolase activity	3.85E-03
71	GO:0004124: cysteine synthase activity	4.64E-03
72	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.64E-03
73	GO:0051753: mannan synthase activity	4.64E-03
74	GO:0102391: decanoate--CoA ligase activity	4.64E-03
75	GO:0005261: cation channel activity	4.64E-03
76	GO:0009927: histidine phosphotransfer kinase activity	4.64E-03
77	GO:0004467: long-chain fatty acid-CoA ligase activity	5.48E-03
78	GO:0016722: oxidoreductase activity, oxidizing metal ions	5.80E-03
79	GO:0043022: ribosome binding	6.37E-03
80	GO:0008173: RNA methyltransferase activity	7.30E-03
81	GO:0030247: polysaccharide binding	7.67E-03
82	GO:0005506: iron ion binding	8.40E-03
83	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	8.65E-03
84	GO:0047372: acylglycerol lipase activity	1.15E-02
85	GO:0015198: oligopeptide transporter activity	1.27E-02
86	GO:0019825: oxygen binding	1.39E-02
87	GO:0000155: phosphorelay sensor kinase activity	1.39E-02
88	GO:0003725: double-stranded RNA binding	1.39E-02
89	GO:0010329: auxin efflux transmembrane transporter activity	1.39E-02
90	GO:0008081: phosphoric diester hydrolase activity	1.39E-02
91	GO:0004185: serine-type carboxypeptidase activity	1.40E-02
92	GO:0003774: motor activity	1.51E-02
93	GO:0008131: primary amine oxidase activity	1.51E-02
94	GO:0008146: sulfotransferase activity	1.64E-02
95	GO:0016788: hydrolase activity, acting on ester bonds	1.84E-02
96	GO:0020037: heme binding	2.08E-02
97	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.31E-02
98	GO:0046872: metal ion binding	2.62E-02
99	GO:0052689: carboxylic ester hydrolase activity	2.68E-02
100	GO:0016746: transferase activity, transferring acyl groups	2.77E-02
101	GO:0008080: N-acetyltransferase activity	3.11E-02
102	GO:0016853: isomerase activity	3.27E-02
103	GO:0005355: glucose transmembrane transporter activity	3.27E-02
104	GO:0010181: FMN binding	3.27E-02
105	GO:0048038: quinone binding	3.61E-02
106	GO:0016829: lyase activity	3.64E-02
107	GO:0016791: phosphatase activity	4.14E-02
108	GO:0005200: structural constituent of cytoskeleton	4.32E-02