Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G54500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0035998: 7,8-dihydroneopterin 3'-triphosphate biosynthetic process0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0042407: cristae formation0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0090279: regulation of calcium ion import0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0015882: L-ascorbic acid transport0.00E+00
13GO:0018023: peptidyl-lysine trimethylation0.00E+00
14GO:0071474: cellular hyperosmotic response0.00E+00
15GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
16GO:0034337: RNA folding0.00E+00
17GO:0015995: chlorophyll biosynthetic process7.52E-16
18GO:0006782: protoporphyrinogen IX biosynthetic process6.16E-09
19GO:0006779: porphyrin-containing compound biosynthetic process3.64E-07
20GO:0015979: photosynthesis3.83E-07
21GO:0009735: response to cytokinin8.00E-06
22GO:0006783: heme biosynthetic process1.63E-05
23GO:0010021: amylopectin biosynthetic process6.01E-05
24GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.37E-04
25GO:1901259: chloroplast rRNA processing1.88E-04
26GO:0009443: pyridoxal 5'-phosphate salvage3.04E-04
27GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.04E-04
28GO:0043489: RNA stabilization3.04E-04
29GO:0043953: protein transport by the Tat complex3.04E-04
30GO:0015671: oxygen transport3.04E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process3.04E-04
32GO:0000481: maturation of 5S rRNA3.04E-04
33GO:1904964: positive regulation of phytol biosynthetic process3.04E-04
34GO:0065002: intracellular protein transmembrane transport3.04E-04
35GO:0043686: co-translational protein modification3.04E-04
36GO:0010028: xanthophyll cycle3.04E-04
37GO:0048363: mucilage pectin metabolic process3.04E-04
38GO:0048564: photosystem I assembly3.09E-04
39GO:0032544: plastid translation3.80E-04
40GO:0048354: mucilage biosynthetic process involved in seed coat development5.40E-04
41GO:0009658: chloroplast organization6.24E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process6.66E-04
43GO:0006423: cysteinyl-tRNA aminoacylation6.66E-04
44GO:0018026: peptidyl-lysine monomethylation6.66E-04
45GO:0006435: threonyl-tRNA aminoacylation6.66E-04
46GO:0000256: allantoin catabolic process6.66E-04
47GO:0071668: plant-type cell wall assembly6.66E-04
48GO:0080183: response to photooxidative stress6.66E-04
49GO:0006729: tetrahydrobiopterin biosynthetic process6.66E-04
50GO:0051262: protein tetramerization6.66E-04
51GO:0009089: lysine biosynthetic process via diaminopimelate7.28E-04
52GO:0000913: preprophase band assembly1.08E-03
53GO:0031022: nuclear migration along microfilament1.08E-03
54GO:0010136: ureide catabolic process1.08E-03
55GO:0034051: negative regulation of plant-type hypersensitive response1.08E-03
56GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.08E-03
57GO:0005977: glycogen metabolic process1.08E-03
58GO:1901000: regulation of response to salt stress1.55E-03
59GO:0009152: purine ribonucleotide biosynthetic process1.55E-03
60GO:0046653: tetrahydrofolate metabolic process1.55E-03
61GO:0009052: pentose-phosphate shunt, non-oxidative branch1.55E-03
62GO:0033014: tetrapyrrole biosynthetic process1.55E-03
63GO:0006145: purine nucleobase catabolic process1.55E-03
64GO:2001141: regulation of RNA biosynthetic process1.55E-03
65GO:0010371: regulation of gibberellin biosynthetic process1.55E-03
66GO:0006020: inositol metabolic process1.55E-03
67GO:0009102: biotin biosynthetic process1.55E-03
68GO:0035428: hexose transmembrane transport1.92E-03
69GO:0006021: inositol biosynthetic process2.07E-03
70GO:0010109: regulation of photosynthesis2.07E-03
71GO:0000304: response to singlet oxygen2.65E-03
72GO:0006564: L-serine biosynthetic process2.65E-03
73GO:0009904: chloroplast accumulation movement2.65E-03
74GO:0045038: protein import into chloroplast thylakoid membrane2.65E-03
75GO:0031365: N-terminal protein amino acid modification2.65E-03
76GO:0046323: glucose import2.88E-03
77GO:0055114: oxidation-reduction process2.89E-03
78GO:0006655: phosphatidylglycerol biosynthetic process3.27E-03
79GO:0010190: cytochrome b6f complex assembly3.27E-03
80GO:0046855: inositol phosphate dephosphorylation3.27E-03
81GO:0019252: starch biosynthetic process3.31E-03
82GO:0046654: tetrahydrofolate biosynthetic process3.93E-03
83GO:0009903: chloroplast avoidance movement3.93E-03
84GO:0009854: oxidative photosynthetic carbon pathway3.93E-03
85GO:0005975: carbohydrate metabolic process4.17E-03
86GO:0006412: translation4.32E-03
87GO:0006614: SRP-dependent cotranslational protein targeting to membrane4.64E-03
88GO:0010027: thylakoid membrane organization5.13E-03
89GO:0006605: protein targeting5.39E-03
90GO:0032508: DNA duplex unwinding5.39E-03
91GO:2000070: regulation of response to water deprivation5.39E-03
92GO:0016559: peroxisome fission5.39E-03
93GO:0071482: cellular response to light stimulus6.18E-03
94GO:0022900: electron transport chain6.18E-03
95GO:0009827: plant-type cell wall modification6.18E-03
96GO:0017004: cytochrome complex assembly6.18E-03
97GO:0018298: protein-chromophore linkage6.69E-03
98GO:0098656: anion transmembrane transport7.01E-03
99GO:0010206: photosystem II repair7.01E-03
100GO:0019432: triglyceride biosynthetic process7.01E-03
101GO:0007568: aging7.74E-03
102GO:0043067: regulation of programmed cell death7.87E-03
103GO:0031425: chloroplast RNA processing7.87E-03
104GO:0010228: vegetative to reproductive phase transition of meristem8.07E-03
105GO:0009853: photorespiration8.49E-03
106GO:0006535: cysteine biosynthetic process from serine8.77E-03
107GO:0019684: photosynthesis, light reaction9.71E-03
108GO:0009773: photosynthetic electron transport in photosystem I9.71E-03
109GO:0008285: negative regulation of cell proliferation9.71E-03
110GO:0006352: DNA-templated transcription, initiation9.71E-03
111GO:0006631: fatty acid metabolic process1.01E-02
112GO:0006790: sulfur compound metabolic process1.07E-02
113GO:0005983: starch catabolic process1.07E-02
114GO:0016024: CDP-diacylglycerol biosynthetic process1.07E-02
115GO:0009725: response to hormone1.17E-02
116GO:0006094: gluconeogenesis1.17E-02
117GO:0010020: chloroplast fission1.27E-02
118GO:0009266: response to temperature stimulus1.27E-02
119GO:0006855: drug transmembrane transport1.28E-02
120GO:0042254: ribosome biogenesis1.36E-02
121GO:0046854: phosphatidylinositol phosphorylation1.38E-02
122GO:0006636: unsaturated fatty acid biosynthetic process1.49E-02
123GO:0019762: glucosinolate catabolic process1.49E-02
124GO:0006289: nucleotide-excision repair1.60E-02
125GO:0019344: cysteine biosynthetic process1.60E-02
126GO:0008299: isoprenoid biosynthetic process1.72E-02
127GO:0007017: microtubule-based process1.72E-02
128GO:0009768: photosynthesis, light harvesting in photosystem I1.72E-02
129GO:0010073: meristem maintenance1.72E-02
130GO:0006096: glycolytic process1.75E-02
131GO:0061077: chaperone-mediated protein folding1.84E-02
132GO:0031408: oxylipin biosynthetic process1.84E-02
133GO:0016114: terpenoid biosynthetic process1.84E-02
134GO:0010431: seed maturation1.84E-02
135GO:0016226: iron-sulfur cluster assembly1.96E-02
136GO:0019748: secondary metabolic process1.96E-02
137GO:0009625: response to insect2.09E-02
138GO:0010227: floral organ abscission2.09E-02
139GO:0051028: mRNA transport2.35E-02
140GO:0042335: cuticle development2.48E-02
141GO:0000271: polysaccharide biosynthetic process2.48E-02
142GO:0015031: protein transport2.52E-02
143GO:0045489: pectin biosynthetic process2.62E-02
144GO:0010197: polar nucleus fusion2.62E-02
145GO:0009741: response to brassinosteroid2.62E-02
146GO:0009793: embryo development ending in seed dormancy2.71E-02
147GO:0007018: microtubule-based movement2.76E-02
148GO:0009646: response to absence of light2.76E-02
149GO:0009058: biosynthetic process2.79E-02
150GO:0006629: lipid metabolic process2.85E-02
151GO:0009791: post-embryonic development2.90E-02
152GO:0006397: mRNA processing3.00E-02
153GO:0000302: response to reactive oxygen species3.04E-02
154GO:0016032: viral process3.19E-02
155GO:0006633: fatty acid biosynthetic process3.32E-02
156GO:0010090: trichome morphogenesis3.33E-02
157GO:0009567: double fertilization forming a zygote and endosperm3.49E-02
158GO:0010286: heat acclimation3.64E-02
159GO:0007623: circadian rhythm3.65E-02
160GO:0009451: RNA modification3.73E-02
161GO:0000910: cytokinesis3.79E-02
162GO:0016126: sterol biosynthetic process3.95E-02
163GO:0009817: defense response to fungus, incompatible interaction4.77E-02
164GO:0009813: flavonoid biosynthetic process4.94E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
4GO:0003934: GTP cyclohydrolase I activity0.00E+00
5GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
6GO:0008887: glycerate kinase activity0.00E+00
7GO:0050613: delta14-sterol reductase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0004853: uroporphyrinogen decarboxylase activity0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0015229: L-ascorbic acid transporter activity0.00E+00
13GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
14GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
15GO:0005048: signal sequence binding0.00E+00
16GO:0004076: biotin synthase activity0.00E+00
17GO:0070402: NADPH binding3.14E-08
18GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase4.22E-06
19GO:0019843: rRNA binding1.54E-05
20GO:0016851: magnesium chelatase activity3.35E-05
21GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.04E-04
22GO:0005227: calcium activated cation channel activity3.04E-04
23GO:0004856: xylulokinase activity3.04E-04
24GO:0004325: ferrochelatase activity3.04E-04
25GO:0042586: peptide deformylase activity3.04E-04
26GO:0005080: protein kinase C binding3.04E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.04E-04
28GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.04E-04
29GO:0005344: oxygen transporter activity3.04E-04
30GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity3.04E-04
31GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity3.04E-04
32GO:0004033: aldo-keto reductase (NADP) activity3.09E-04
33GO:0052832: inositol monophosphate 3-phosphatase activity6.66E-04
34GO:0033201: alpha-1,4-glucan synthase activity6.66E-04
35GO:0004817: cysteine-tRNA ligase activity6.66E-04
36GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity6.66E-04
37GO:0016630: protochlorophyllide reductase activity6.66E-04
38GO:0008934: inositol monophosphate 1-phosphatase activity6.66E-04
39GO:0052833: inositol monophosphate 4-phosphatase activity6.66E-04
40GO:0004829: threonine-tRNA ligase activity6.66E-04
41GO:0019156: isoamylase activity6.66E-04
42GO:0050017: L-3-cyanoalanine synthase activity6.66E-04
43GO:0042389: omega-3 fatty acid desaturase activity6.66E-04
44GO:0009977: proton motive force dependent protein transmembrane transporter activity6.66E-04
45GO:0004617: phosphoglycerate dehydrogenase activity6.66E-04
46GO:0004565: beta-galactosidase activity9.40E-04
47GO:0008266: poly(U) RNA binding1.06E-03
48GO:0015462: ATPase-coupled protein transmembrane transporter activity1.08E-03
49GO:0004373: glycogen (starch) synthase activity1.08E-03
50GO:0005504: fatty acid binding1.08E-03
51GO:0003913: DNA photolyase activity1.08E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.08E-03
53GO:0004751: ribose-5-phosphate isomerase activity1.08E-03
54GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.08E-03
55GO:0008864: formyltetrahydrofolate deformylase activity1.08E-03
56GO:0003729: mRNA binding1.31E-03
57GO:0004792: thiosulfate sulfurtransferase activity1.55E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.55E-03
59GO:0043023: ribosomal large subunit binding1.55E-03
60GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.02E-03
61GO:0016987: sigma factor activity2.07E-03
62GO:0070628: proteasome binding2.07E-03
63GO:0045430: chalcone isomerase activity2.07E-03
64GO:0009011: starch synthase activity2.07E-03
65GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.07E-03
66GO:0043495: protein anchor2.07E-03
67GO:0016279: protein-lysine N-methyltransferase activity2.07E-03
68GO:0001053: plastid sigma factor activity2.07E-03
69GO:0022891: substrate-specific transmembrane transporter activity2.10E-03
70GO:0003735: structural constituent of ribosome2.63E-03
71GO:0008374: O-acyltransferase activity2.65E-03
72GO:0003959: NADPH dehydrogenase activity2.65E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor2.65E-03
74GO:0005355: glucose transmembrane transporter activity3.09E-03
75GO:0004332: fructose-bisphosphate aldolase activity3.27E-03
76GO:0031593: polyubiquitin binding3.27E-03
77GO:0004130: cytochrome-c peroxidase activity3.27E-03
78GO:0004556: alpha-amylase activity3.27E-03
79GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.27E-03
80GO:0005525: GTP binding3.59E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.93E-03
82GO:0004017: adenylate kinase activity3.93E-03
83GO:0005261: cation channel activity3.93E-03
84GO:0004124: cysteine synthase activity3.93E-03
85GO:0009881: photoreceptor activity4.64E-03
86GO:0019899: enzyme binding4.64E-03
87GO:0008312: 7S RNA binding5.39E-03
88GO:0005337: nucleoside transmembrane transporter activity5.39E-03
89GO:0016168: chlorophyll binding5.42E-03
90GO:0003723: RNA binding5.59E-03
91GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.18E-03
92GO:0008135: translation factor activity, RNA binding6.18E-03
93GO:0015144: carbohydrate transmembrane transporter activity6.34E-03
94GO:0071949: FAD binding7.01E-03
95GO:0003924: GTPase activity7.34E-03
96GO:0005351: sugar:proton symporter activity7.39E-03
97GO:0004743: pyruvate kinase activity7.87E-03
98GO:0030955: potassium ion binding7.87E-03
99GO:0003746: translation elongation factor activity8.49E-03
100GO:0016491: oxidoreductase activity9.25E-03
101GO:0008559: xenobiotic-transporting ATPase activity9.71E-03
102GO:0005315: inorganic phosphate transmembrane transporter activity1.17E-02
103GO:0031072: heat shock protein binding1.17E-02
104GO:0051537: 2 iron, 2 sulfur cluster binding1.19E-02
105GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.27E-02
106GO:0016887: ATPase activity1.43E-02
107GO:0031409: pigment binding1.49E-02
108GO:0043130: ubiquitin binding1.60E-02
109GO:0005528: FK506 binding1.60E-02
110GO:0051536: iron-sulfur cluster binding1.60E-02
111GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.96E-02
112GO:0003824: catalytic activity1.97E-02
113GO:0008514: organic anion transmembrane transporter activity2.22E-02
114GO:0016787: hydrolase activity2.35E-02
115GO:0008080: N-acetyltransferase activity2.62E-02
116GO:0016853: isomerase activity2.76E-02
117GO:0004872: receptor activity2.90E-02
118GO:0004252: serine-type endopeptidase activity2.94E-02
119GO:0030170: pyridoxal phosphate binding2.94E-02
120GO:0003684: damaged DNA binding3.49E-02
121GO:0008483: transaminase activity3.64E-02
122GO:0005200: structural constituent of cytoskeleton3.64E-02
123GO:0016597: amino acid binding3.79E-02
124GO:0008017: microtubule binding3.82E-02
125GO:0005509: calcium ion binding4.37E-02
126GO:0008236: serine-type peptidase activity4.60E-02
127GO:0042802: identical protein binding4.62E-02
128GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.62E-02
129GO:0015238: drug transmembrane transporter activity4.94E-02
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Gene type



Gene DE type