Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903224: regulation of endodermal cell differentiation0.00E+00
2GO:0045184: establishment of protein localization0.00E+00
3GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
4GO:0006399: tRNA metabolic process0.00E+00
5GO:1905421: regulation of plant organ morphogenesis0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
9GO:0009658: chloroplast organization2.06E-08
10GO:0009657: plastid organization2.81E-07
11GO:0009451: RNA modification7.11E-07
12GO:0042793: transcription from plastid promoter3.18E-06
13GO:1900865: chloroplast RNA modification3.44E-05
14GO:0016556: mRNA modification4.69E-05
15GO:0010020: chloroplast fission1.04E-04
16GO:0009793: embryo development ending in seed dormancy1.10E-04
17GO:0006418: tRNA aminoacylation for protein translation1.95E-04
18GO:0042026: protein refolding2.52E-04
19GO:1901259: chloroplast rRNA processing2.52E-04
20GO:0048437: floral organ development3.27E-04
21GO:0009790: embryo development3.47E-04
22GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.67E-04
23GO:0070509: calcium ion import3.67E-04
24GO:0006438: valyl-tRNA aminoacylation3.67E-04
25GO:0090558: plant epidermis development3.67E-04
26GO:0010063: positive regulation of trichoblast fate specification3.67E-04
27GO:0010480: microsporocyte differentiation3.67E-04
28GO:0042371: vitamin K biosynthetic process3.67E-04
29GO:0035987: endodermal cell differentiation3.67E-04
30GO:0006436: tryptophanyl-tRNA aminoacylation3.67E-04
31GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.67E-04
32GO:0006419: alanyl-tRNA aminoacylation3.67E-04
33GO:0042659: regulation of cell fate specification3.67E-04
34GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process3.67E-04
35GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process3.67E-04
36GO:0000373: Group II intron splicing6.01E-04
37GO:0010583: response to cyclopentenone6.22E-04
38GO:0048255: mRNA stabilization8.00E-04
39GO:1900871: chloroplast mRNA modification8.00E-04
40GO:1902326: positive regulation of chlorophyll biosynthetic process8.00E-04
41GO:0018026: peptidyl-lysine monomethylation8.00E-04
42GO:0015712: hexose phosphate transport8.00E-04
43GO:0009662: etioplast organization8.00E-04
44GO:0009220: pyrimidine ribonucleotide biosynthetic process8.00E-04
45GO:1904143: positive regulation of carotenoid biosynthetic process8.00E-04
46GO:0001682: tRNA 5'-leader removal8.00E-04
47GO:2000123: positive regulation of stomatal complex development8.00E-04
48GO:0006420: arginyl-tRNA aminoacylation8.00E-04
49GO:0060359: response to ammonium ion8.00E-04
50GO:0006508: proteolysis8.54E-04
51GO:0010027: thylakoid membrane organization9.11E-04
52GO:0006954: inflammatory response1.29E-03
53GO:0035436: triose phosphate transmembrane transport1.29E-03
54GO:0042780: tRNA 3'-end processing1.29E-03
55GO:0001578: microtubule bundle formation1.29E-03
56GO:0043157: response to cation stress1.29E-03
57GO:0005977: glycogen metabolic process1.29E-03
58GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.29E-03
59GO:0001927: exocyst assembly1.29E-03
60GO:0045910: negative regulation of DNA recombination1.29E-03
61GO:0048281: inflorescence morphogenesis1.29E-03
62GO:0090708: specification of plant organ axis polarity1.29E-03
63GO:0010207: photosystem II assembly1.38E-03
64GO:0051601: exocyst localization1.87E-03
65GO:0031048: chromatin silencing by small RNA1.87E-03
66GO:0010148: transpiration1.87E-03
67GO:0051289: protein homotetramerization1.87E-03
68GO:2001141: regulation of RNA biosynthetic process1.87E-03
69GO:1902476: chloride transmembrane transport1.87E-03
70GO:0010071: root meristem specification1.87E-03
71GO:0051513: regulation of monopolar cell growth1.87E-03
72GO:0051085: chaperone mediated protein folding requiring cofactor1.87E-03
73GO:0010239: chloroplast mRNA processing1.87E-03
74GO:0010306: rhamnogalacturonan II biosynthetic process1.87E-03
75GO:0019048: modulation by virus of host morphology or physiology1.87E-03
76GO:0051302: regulation of cell division2.11E-03
77GO:0009416: response to light stimulus2.35E-03
78GO:2000038: regulation of stomatal complex development2.51E-03
79GO:0006221: pyrimidine nucleotide biosynthetic process2.51E-03
80GO:0051567: histone H3-K9 methylation2.51E-03
81GO:0015713: phosphoglycerate transport2.51E-03
82GO:0044205: 'de novo' UMP biosynthetic process2.51E-03
83GO:0010021: amylopectin biosynthetic process2.51E-03
84GO:0006479: protein methylation2.51E-03
85GO:0051322: anaphase2.51E-03
86GO:0030104: water homeostasis2.51E-03
87GO:0006730: one-carbon metabolic process2.54E-03
88GO:0009664: plant-type cell wall organization3.16E-03
89GO:0010236: plastoquinone biosynthetic process3.21E-03
90GO:0048497: maintenance of floral organ identity3.21E-03
91GO:0009107: lipoate biosynthetic process3.21E-03
92GO:0010158: abaxial cell fate specification3.21E-03
93GO:0010375: stomatal complex patterning3.21E-03
94GO:0008033: tRNA processing3.53E-03
95GO:0048868: pollen tube development3.80E-03
96GO:0016458: gene silencing3.96E-03
97GO:0050665: hydrogen peroxide biosynthetic process3.96E-03
98GO:0009959: negative gravitropism3.96E-03
99GO:0009913: epidermal cell differentiation3.96E-03
100GO:0006655: phosphatidylglycerol biosynthetic process3.96E-03
101GO:0016554: cytidine to uridine editing3.96E-03
102GO:0009082: branched-chain amino acid biosynthetic process4.78E-03
103GO:0006458: 'de novo' protein folding4.78E-03
104GO:0009942: longitudinal axis specification4.78E-03
105GO:0009099: valine biosynthetic process4.78E-03
106GO:0009854: oxidative photosynthetic carbon pathway4.78E-03
107GO:2000067: regulation of root morphogenesis4.78E-03
108GO:0042372: phylloquinone biosynthetic process4.78E-03
109GO:0010050: vegetative phase change5.64E-03
110GO:0010444: guard mother cell differentiation5.64E-03
111GO:0006400: tRNA modification5.64E-03
112GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process5.64E-03
113GO:0010103: stomatal complex morphogenesis5.64E-03
114GO:0048528: post-embryonic root development5.64E-03
115GO:0009772: photosynthetic electron transport in photosystem II5.64E-03
116GO:0006821: chloride transport5.64E-03
117GO:0070370: cellular heat acclimation5.64E-03
118GO:0009828: plant-type cell wall loosening5.69E-03
119GO:0009850: auxin metabolic process6.56E-03
120GO:0006353: DNA-templated transcription, termination6.56E-03
121GO:0070413: trehalose metabolism in response to stress6.56E-03
122GO:0055075: potassium ion homeostasis6.56E-03
123GO:0048564: photosystem I assembly6.56E-03
124GO:0001522: pseudouridine synthesis6.56E-03
125GO:0001510: RNA methylation7.52E-03
126GO:0009097: isoleucine biosynthetic process7.52E-03
127GO:0010204: defense response signaling pathway, resistance gene-independent7.52E-03
128GO:0007389: pattern specification process7.52E-03
129GO:0071482: cellular response to light stimulus7.52E-03
130GO:0001558: regulation of cell growth7.52E-03
131GO:0060321: acceptance of pollen7.52E-03
132GO:0005975: carbohydrate metabolic process7.70E-03
133GO:0000902: cell morphogenesis8.54E-03
134GO:0006098: pentose-phosphate shunt8.54E-03
135GO:0048481: plant ovule development8.88E-03
136GO:0031425: chloroplast RNA processing9.60E-03
137GO:0009638: phototropism9.60E-03
138GO:2000280: regulation of root development9.60E-03
139GO:0009098: leucine biosynthetic process9.60E-03
140GO:0006535: cysteine biosynthetic process from serine1.07E-02
141GO:0030422: production of siRNA involved in RNA interference1.07E-02
142GO:0006298: mismatch repair1.07E-02
143GO:0006259: DNA metabolic process1.07E-02
144GO:0009073: aromatic amino acid family biosynthetic process1.19E-02
145GO:0006352: DNA-templated transcription, initiation1.19E-02
146GO:0048229: gametophyte development1.19E-02
147GO:0010015: root morphogenesis1.19E-02
148GO:0006265: DNA topological change1.19E-02
149GO:0016024: CDP-diacylglycerol biosynthetic process1.31E-02
150GO:0045037: protein import into chloroplast stroma1.31E-02
151GO:0010582: floral meristem determinacy1.31E-02
152GO:0009785: blue light signaling pathway1.43E-02
153GO:0009691: cytokinin biosynthetic process1.43E-02
154GO:0050826: response to freezing1.43E-02
155GO:0010075: regulation of meristem growth1.43E-02
156GO:0006094: gluconeogenesis1.43E-02
157GO:0009934: regulation of meristem structural organization1.56E-02
158GO:0090351: seedling development1.69E-02
159GO:0070588: calcium ion transmembrane transport1.69E-02
160GO:0006833: water transport1.82E-02
161GO:0005992: trehalose biosynthetic process1.96E-02
162GO:0019344: cysteine biosynthetic process1.96E-02
163GO:0009116: nucleoside metabolic process1.96E-02
164GO:0009944: polarity specification of adaxial/abaxial axis1.96E-02
165GO:0006364: rRNA processing1.97E-02
166GO:0051603: proteolysis involved in cellular protein catabolic process2.04E-02
167GO:0010073: meristem maintenance2.11E-02
168GO:0019953: sexual reproduction2.11E-02
169GO:0006306: DNA methylation2.25E-02
170GO:0016998: cell wall macromolecule catabolic process2.25E-02
171GO:0015992: proton transport2.25E-02
172GO:0061077: chaperone-mediated protein folding2.25E-02
173GO:0007005: mitochondrion organization2.40E-02
174GO:0016226: iron-sulfur cluster assembly2.40E-02
175GO:0080167: response to karrikin2.49E-02
176GO:0010082: regulation of root meristem growth2.56E-02
177GO:0001944: vasculature development2.56E-02
178GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.56E-02
179GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.60E-02
180GO:0042127: regulation of cell proliferation2.71E-02
181GO:0009306: protein secretion2.71E-02
182GO:0009553: embryo sac development2.72E-02
183GO:0000226: microtubule cytoskeleton organization3.04E-02
184GO:0048653: anther development3.04E-02
185GO:0006662: glycerol ether metabolic process3.20E-02
186GO:0010305: leaf vascular tissue pattern formation3.20E-02
187GO:0006342: chromatin silencing3.20E-02
188GO:0009741: response to brassinosteroid3.20E-02
189GO:0048544: recognition of pollen3.37E-02
190GO:0007059: chromosome segregation3.37E-02
191GO:0009646: response to absence of light3.37E-02
192GO:0048825: cotyledon development3.55E-02
193GO:0019252: starch biosynthetic process3.55E-02
194GO:0008654: phospholipid biosynthetic process3.55E-02
195GO:0009851: auxin biosynthetic process3.55E-02
196GO:0002229: defense response to oomycetes3.72E-02
197GO:0032502: developmental process3.90E-02
198GO:0009630: gravitropism3.90E-02
199GO:0006464: cellular protein modification process4.27E-02
200GO:0010252: auxin homeostasis4.27E-02
201GO:0007267: cell-cell signaling4.45E-02
202GO:0051607: defense response to virus4.64E-02
203GO:0000910: cytokinesis4.64E-02
204GO:0001666: response to hypoxia4.83E-02
RankGO TermAdjusted P value
1GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
2GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
3GO:0004056: argininosuccinate lyase activity0.00E+00
4GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
7GO:0004519: endonuclease activity4.03E-09
8GO:0003723: RNA binding1.25E-06
9GO:0008237: metallopeptidase activity4.58E-06
10GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.07E-06
11GO:0004176: ATP-dependent peptidase activity1.16E-05
12GO:0001872: (1->3)-beta-D-glucan binding4.69E-05
13GO:0004812: aminoacyl-tRNA ligase activity3.56E-04
14GO:0016274: protein-arginine N-methyltransferase activity3.67E-04
15GO:0004813: alanine-tRNA ligase activity3.67E-04
16GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.67E-04
17GO:0052381: tRNA dimethylallyltransferase activity3.67E-04
18GO:0004160: dihydroxy-acid dehydratase activity3.67E-04
19GO:0004832: valine-tRNA ligase activity3.67E-04
20GO:0004830: tryptophan-tRNA ligase activity3.67E-04
21GO:0005227: calcium activated cation channel activity3.67E-04
22GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity3.67E-04
23GO:0019156: isoamylase activity8.00E-04
24GO:0017118: lipoyltransferase activity8.00E-04
25GO:0003852: 2-isopropylmalate synthase activity8.00E-04
26GO:0004814: arginine-tRNA ligase activity8.00E-04
27GO:0016415: octanoyltransferase activity8.00E-04
28GO:0004047: aminomethyltransferase activity8.00E-04
29GO:0044183: protein binding involved in protein folding9.51E-04
30GO:0042781: 3'-tRNA processing endoribonuclease activity1.29E-03
31GO:0016805: dipeptidase activity1.29E-03
32GO:0071917: triose-phosphate transmembrane transporter activity1.29E-03
33GO:0017150: tRNA dihydrouridine synthase activity1.29E-03
34GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.38E-03
35GO:0004222: metalloendopeptidase activity1.44E-03
36GO:0009041: uridylate kinase activity1.87E-03
37GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.87E-03
38GO:0035197: siRNA binding1.87E-03
39GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.87E-03
40GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.87E-03
41GO:0009678: hydrogen-translocating pyrophosphatase activity1.87E-03
42GO:0019199: transmembrane receptor protein kinase activity2.51E-03
43GO:0005253: anion channel activity2.51E-03
44GO:0042277: peptide binding2.51E-03
45GO:0008891: glycolate oxidase activity2.51E-03
46GO:0015120: phosphoglycerate transmembrane transporter activity2.51E-03
47GO:0004659: prenyltransferase activity2.51E-03
48GO:0016279: protein-lysine N-methyltransferase activity2.51E-03
49GO:0001053: plastid sigma factor activity2.51E-03
50GO:0016836: hydro-lyase activity2.51E-03
51GO:0016987: sigma factor activity2.51E-03
52GO:0043621: protein self-association2.62E-03
53GO:0005275: amine transmembrane transporter activity3.21E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor3.21E-03
55GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.21E-03
56GO:0005524: ATP binding3.89E-03
57GO:0004556: alpha-amylase activity3.96E-03
58GO:0005247: voltage-gated chloride channel activity3.96E-03
59GO:0030983: mismatched DNA binding3.96E-03
60GO:0004605: phosphatidate cytidylyltransferase activity3.96E-03
61GO:0004332: fructose-bisphosphate aldolase activity3.96E-03
62GO:0004526: ribonuclease P activity3.96E-03
63GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.08E-03
64GO:0004124: cysteine synthase activity4.78E-03
65GO:0008195: phosphatidate phosphatase activity4.78E-03
66GO:0004427: inorganic diphosphatase activity5.64E-03
67GO:0016887: ATPase activity6.40E-03
68GO:0016597: amino acid binding6.42E-03
69GO:0043022: ribosome binding6.56E-03
70GO:0019843: rRNA binding7.24E-03
71GO:0008173: RNA methyltransferase activity7.52E-03
72GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.52E-03
73GO:0030247: polysaccharide binding8.01E-03
74GO:0009672: auxin:proton symporter activity9.60E-03
75GO:0004805: trehalose-phosphatase activity1.07E-02
76GO:0003993: acid phosphatase activity1.18E-02
77GO:0051539: 4 iron, 4 sulfur cluster binding1.29E-02
78GO:0000049: tRNA binding1.31E-02
79GO:0004521: endoribonuclease activity1.31E-02
80GO:0004565: beta-galactosidase activity1.43E-02
81GO:0010329: auxin efflux transmembrane transporter activity1.43E-02
82GO:0005262: calcium channel activity1.43E-02
83GO:0009982: pseudouridine synthase activity1.43E-02
84GO:0004185: serine-type carboxypeptidase activity1.46E-02
85GO:0008168: methyltransferase activity1.81E-02
86GO:0033612: receptor serine/threonine kinase binding2.25E-02
87GO:0008408: 3'-5' exonuclease activity2.25E-02
88GO:0004650: polygalacturonase activity2.56E-02
89GO:0051082: unfolded protein binding2.81E-02
90GO:0047134: protein-disulfide reductase activity2.87E-02
91GO:0008026: ATP-dependent helicase activity2.98E-02
92GO:0004527: exonuclease activity3.20E-02
93GO:0001085: RNA polymerase II transcription factor binding3.20E-02
94GO:0010181: FMN binding3.37E-02
95GO:0004791: thioredoxin-disulfide reductase activity3.37E-02
96GO:0005355: glucose transmembrane transporter activity3.37E-02
97GO:0019901: protein kinase binding3.55E-02
98GO:0016762: xyloglucan:xyloglucosyl transferase activity3.72E-02
99GO:0016829: lyase activity3.80E-02
100GO:0004518: nuclease activity3.90E-02
101GO:0003924: GTPase activity4.04E-02
102GO:0000156: phosphorelay response regulator activity4.08E-02
103GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.08E-02
104GO:0016791: phosphatase activity4.27E-02
105GO:0003684: damaged DNA binding4.27E-02
106GO:0016722: oxidoreductase activity, oxidizing metal ions4.45E-02
107GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity4.45E-02
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Gene type



Gene DE type