Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G53450

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0030155: regulation of cell adhesion0.00E+00
7GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
8GO:0044249: cellular biosynthetic process0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0090071: negative regulation of ribosome biogenesis0.00E+00
11GO:1903224: regulation of endodermal cell differentiation0.00E+00
12GO:1905177: tracheary element differentiation0.00E+00
13GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
14GO:0045184: establishment of protein localization0.00E+00
15GO:0009658: chloroplast organization9.83E-11
16GO:0046620: regulation of organ growth5.36E-09
17GO:0009734: auxin-activated signaling pathway2.87E-07
18GO:0009657: plastid organization8.90E-07
19GO:0009733: response to auxin1.97E-06
20GO:0040008: regulation of growth3.78E-06
21GO:0042793: transcription from plastid promoter7.71E-06
22GO:0006418: tRNA aminoacylation for protein translation2.68E-05
23GO:0016556: mRNA modification8.48E-05
24GO:0009926: auxin polar transport1.23E-04
25GO:1901259: chloroplast rRNA processing4.22E-04
26GO:0005975: carbohydrate metabolic process4.92E-04
27GO:0006730: one-carbon metabolic process4.95E-04
28GO:0006747: FAD biosynthetic process5.18E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.18E-04
30GO:0006419: alanyl-tRNA aminoacylation5.18E-04
31GO:0000476: maturation of 4.5S rRNA5.18E-04
32GO:0000967: rRNA 5'-end processing5.18E-04
33GO:0051418: microtubule nucleation by microtubule organizing center5.18E-04
34GO:0042659: regulation of cell fate specification5.18E-04
35GO:0070509: calcium ion import5.18E-04
36GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.18E-04
37GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.18E-04
38GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.18E-04
39GO:0006438: valyl-tRNA aminoacylation5.18E-04
40GO:0010063: positive regulation of trichoblast fate specification5.18E-04
41GO:0090558: plant epidermis development5.18E-04
42GO:0010480: microsporocyte differentiation5.18E-04
43GO:0042547: cell wall modification involved in multidimensional cell growth5.18E-04
44GO:0042371: vitamin K biosynthetic process5.18E-04
45GO:0019478: D-amino acid catabolic process5.18E-04
46GO:0035987: endodermal cell differentiation5.18E-04
47GO:0006436: tryptophanyl-tRNA aminoacylation5.18E-04
48GO:0034080: CENP-A containing nucleosome assembly5.18E-04
49GO:0048528: post-embryonic root development5.41E-04
50GO:0048437: floral organ development5.41E-04
51GO:0006353: DNA-templated transcription, termination6.75E-04
52GO:0008033: tRNA processing7.56E-04
53GO:0009790: embryo development8.74E-04
54GO:0000373: Group II intron splicing9.82E-04
55GO:0000902: cell morphogenesis9.82E-04
56GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.04E-03
57GO:2000123: positive regulation of stomatal complex development1.11E-03
58GO:0034470: ncRNA processing1.11E-03
59GO:1900871: chloroplast mRNA modification1.11E-03
60GO:0033566: gamma-tubulin complex localization1.11E-03
61GO:0060359: response to ammonium ion1.11E-03
62GO:1902326: positive regulation of chlorophyll biosynthetic process1.11E-03
63GO:0018026: peptidyl-lysine monomethylation1.11E-03
64GO:0009220: pyrimidine ribonucleotide biosynthetic process1.11E-03
65GO:1904143: positive regulation of carotenoid biosynthetic process1.11E-03
66GO:0001682: tRNA 5'-leader removal1.11E-03
67GO:0031425: chloroplast RNA processing1.16E-03
68GO:0032502: developmental process1.18E-03
69GO:0010015: root morphogenesis1.56E-03
70GO:0006415: translational termination1.56E-03
71GO:0009793: embryo development ending in seed dormancy1.72E-03
72GO:0010027: thylakoid membrane organization1.73E-03
73GO:0007052: mitotic spindle organization1.82E-03
74GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.82E-03
75GO:0045910: negative regulation of DNA recombination1.82E-03
76GO:0048281: inflorescence morphogenesis1.82E-03
77GO:0006954: inflammatory response1.82E-03
78GO:0090708: specification of plant organ axis polarity1.82E-03
79GO:0010623: programmed cell death involved in cell development1.82E-03
80GO:0042780: tRNA 3'-end processing1.82E-03
81GO:0001578: microtubule bundle formation1.82E-03
82GO:0043157: response to cation stress1.82E-03
83GO:0005977: glycogen metabolic process1.82E-03
84GO:0010207: photosystem II assembly2.29E-03
85GO:0010020: chloroplast fission2.29E-03
86GO:0071732: cellular response to nitric oxide2.57E-03
87GO:1902476: chloride transmembrane transport2.64E-03
88GO:0010071: root meristem specification2.64E-03
89GO:0051513: regulation of monopolar cell growth2.64E-03
90GO:0010306: rhamnogalacturonan II biosynthetic process2.64E-03
91GO:0009226: nucleotide-sugar biosynthetic process2.64E-03
92GO:0010239: chloroplast mRNA processing2.64E-03
93GO:0044211: CTP salvage2.64E-03
94GO:0046739: transport of virus in multicellular host2.64E-03
95GO:0019048: modulation by virus of host morphology or physiology2.64E-03
96GO:2000904: regulation of starch metabolic process2.64E-03
97GO:0090307: mitotic spindle assembly2.64E-03
98GO:0031048: chromatin silencing by small RNA2.64E-03
99GO:0010148: transpiration2.64E-03
100GO:0043572: plastid fission2.64E-03
101GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.64E-03
102GO:0034508: centromere complex assembly2.64E-03
103GO:0007275: multicellular organism development2.75E-03
104GO:0051302: regulation of cell division3.51E-03
105GO:0042274: ribosomal small subunit biogenesis3.56E-03
106GO:0030104: water homeostasis3.56E-03
107GO:0051322: anaphase3.56E-03
108GO:2000038: regulation of stomatal complex development3.56E-03
109GO:0044205: 'de novo' UMP biosynthetic process3.56E-03
110GO:0051567: histone H3-K9 methylation3.56E-03
111GO:0010508: positive regulation of autophagy3.56E-03
112GO:0007020: microtubule nucleation3.56E-03
113GO:0044206: UMP salvage3.56E-03
114GO:0010021: amylopectin biosynthetic process3.56E-03
115GO:0006508: proteolysis3.94E-03
116GO:0031348: negative regulation of defense response4.23E-03
117GO:0009107: lipoate biosynthetic process4.57E-03
118GO:0010158: abaxial cell fate specification4.57E-03
119GO:0046785: microtubule polymerization4.57E-03
120GO:0010375: stomatal complex patterning4.57E-03
121GO:0032543: mitochondrial translation4.57E-03
122GO:0010236: plastoquinone biosynthetic process4.57E-03
123GO:0071369: cellular response to ethylene stimulus4.62E-03
124GO:0009451: RNA modification5.25E-03
125GO:0009959: negative gravitropism5.66E-03
126GO:0006655: phosphatidylglycerol biosynthetic process5.66E-03
127GO:0016458: gene silencing5.66E-03
128GO:0006206: pyrimidine nucleobase metabolic process5.66E-03
129GO:0050665: hydrogen peroxide biosynthetic process5.66E-03
130GO:0032973: amino acid export5.66E-03
131GO:0018258: protein O-linked glycosylation via hydroxyproline5.66E-03
132GO:0010405: arabinogalactan protein metabolic process5.66E-03
133GO:0009741: response to brassinosteroid6.36E-03
134GO:0048868: pollen tube development6.36E-03
135GO:0080086: stamen filament development6.83E-03
136GO:0009648: photoperiodism6.83E-03
137GO:2000067: regulation of root morphogenesis6.83E-03
138GO:0042372: phylloquinone biosynthetic process6.83E-03
139GO:0019509: L-methionine salvage from methylthioadenosine6.83E-03
140GO:0009082: branched-chain amino acid biosynthetic process6.83E-03
141GO:0006458: 'de novo' protein folding6.83E-03
142GO:0017148: negative regulation of translation6.83E-03
143GO:0009942: longitudinal axis specification6.83E-03
144GO:0042026: protein refolding6.83E-03
145GO:0009099: valine biosynthetic process6.83E-03
146GO:0030488: tRNA methylation6.83E-03
147GO:0009854: oxidative photosynthetic carbon pathway6.83E-03
148GO:0051603: proteolysis involved in cellular protein catabolic process6.98E-03
149GO:0009772: photosynthetic electron transport in photosystem II8.09E-03
150GO:0043090: amino acid import8.09E-03
151GO:0006821: chloride transport8.09E-03
152GO:0070370: cellular heat acclimation8.09E-03
153GO:0010050: vegetative phase change8.09E-03
154GO:0010444: guard mother cell differentiation8.09E-03
155GO:0006400: tRNA modification8.09E-03
156GO:0030307: positive regulation of cell growth8.09E-03
157GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.09E-03
158GO:0010103: stomatal complex morphogenesis8.09E-03
159GO:0071281: cellular response to iron ion8.97E-03
160GO:0001522: pseudouridine synthesis9.42E-03
161GO:0048564: photosystem I assembly9.42E-03
162GO:0009850: auxin metabolic process9.42E-03
163GO:0009704: de-etiolation9.42E-03
164GO:0042255: ribosome assembly9.42E-03
165GO:0070413: trehalose metabolism in response to stress9.42E-03
166GO:0055075: potassium ion homeostasis9.42E-03
167GO:0009231: riboflavin biosynthetic process9.42E-03
168GO:0010252: auxin homeostasis9.56E-03
169GO:0001558: regulation of cell growth1.08E-02
170GO:0009827: plant-type cell wall modification1.08E-02
171GO:0009097: isoleucine biosynthetic process1.08E-02
172GO:0010204: defense response signaling pathway, resistance gene-independent1.08E-02
173GO:0010497: plasmodesmata-mediated intercellular transport1.08E-02
174GO:0007389: pattern specification process1.08E-02
175GO:0009742: brassinosteroid mediated signaling pathway1.13E-02
176GO:0080144: amino acid homeostasis1.23E-02
177GO:0006098: pentose-phosphate shunt1.23E-02
178GO:0080167: response to karrikin1.37E-02
179GO:2000280: regulation of root development1.38E-02
180GO:0009638: phototropism1.38E-02
181GO:1900865: chloroplast RNA modification1.38E-02
182GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.38E-02
183GO:0048481: plant ovule development1.50E-02
184GO:0006298: mismatch repair1.55E-02
185GO:0006949: syncytium formation1.55E-02
186GO:0006259: DNA metabolic process1.55E-02
187GO:0006535: cysteine biosynthetic process from serine1.55E-02
188GO:0030422: production of siRNA involved in RNA interference1.55E-02
189GO:0009641: shade avoidance1.55E-02
190GO:0006265: DNA topological change1.71E-02
191GO:0009089: lysine biosynthetic process via diaminopimelate1.71E-02
192GO:0009073: aromatic amino acid family biosynthetic process1.71E-02
193GO:0009773: photosynthetic electron transport in photosystem I1.71E-02
194GO:0048229: gametophyte development1.71E-02
195GO:0016024: CDP-diacylglycerol biosynthetic process1.89E-02
196GO:0045037: protein import into chloroplast stroma1.89E-02
197GO:0010582: floral meristem determinacy1.89E-02
198GO:0009416: response to light stimulus1.98E-02
199GO:0010075: regulation of meristem growth2.07E-02
200GO:0006094: gluconeogenesis2.07E-02
201GO:0009767: photosynthetic electron transport chain2.07E-02
202GO:2000012: regulation of auxin polar transport2.07E-02
203GO:0010628: positive regulation of gene expression2.07E-02
204GO:0009785: blue light signaling pathway2.07E-02
205GO:0009691: cytokinin biosynthetic process2.07E-02
206GO:0050826: response to freezing2.07E-02
207GO:0009934: regulation of meristem structural organization2.25E-02
208GO:0090351: seedling development2.44E-02
209GO:0070588: calcium ion transmembrane transport2.44E-02
210GO:0071555: cell wall organization2.54E-02
211GO:0006833: water transport2.64E-02
212GO:0009965: leaf morphogenesis2.76E-02
213GO:0019344: cysteine biosynthetic process2.84E-02
214GO:0009944: polarity specification of adaxial/abaxial axis2.84E-02
215GO:0009116: nucleoside metabolic process2.84E-02
216GO:0030150: protein import into mitochondrial matrix2.84E-02
217GO:0007010: cytoskeleton organization2.84E-02
218GO:0005992: trehalose biosynthetic process2.84E-02
219GO:0043622: cortical microtubule organization3.05E-02
220GO:0006825: copper ion transport3.05E-02
221GO:0009664: plant-type cell wall organization3.08E-02
222GO:0061077: chaperone-mediated protein folding3.26E-02
223GO:0006306: DNA methylation3.26E-02
224GO:0016998: cell wall macromolecule catabolic process3.26E-02
225GO:0015992: proton transport3.26E-02
226GO:0006364: rRNA processing3.31E-02
227GO:0009814: defense response, incompatible interaction3.48E-02
228GO:0006417: regulation of translation3.66E-02
229GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.70E-02
230GO:0010082: regulation of root meristem growth3.70E-02
231GO:0009686: gibberellin biosynthetic process3.70E-02
232GO:0001944: vasculature development3.70E-02
233GO:0042254: ribosome biogenesis3.72E-02
234GO:0010089: xylem development3.93E-02
235GO:0042127: regulation of cell proliferation3.93E-02
236GO:0048367: shoot system development4.03E-02
237GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.16E-02
238GO:0048653: anther development4.40E-02
239GO:0000226: microtubule cytoskeleton organization4.40E-02
240GO:0009553: embryo sac development4.55E-02
241GO:0006342: chromatin silencing4.64E-02
242GO:0010268: brassinosteroid homeostasis4.64E-02
243GO:0006662: glycerol ether metabolic process4.64E-02
244GO:0010305: leaf vascular tissue pattern formation4.64E-02
245GO:0006396: RNA processing4.83E-02
246GO:0007059: chromosome segregation4.88E-02
247GO:0009646: response to absence of light4.88E-02
248GO:0048544: recognition of pollen4.88E-02
249GO:0006468: protein phosphorylation4.92E-02
RankGO TermAdjusted P value
1GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
2GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
3GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
4GO:0004823: leucine-tRNA ligase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0015267: channel activity0.00E+00
8GO:0004176: ATP-dependent peptidase activity1.26E-06
9GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.18E-05
10GO:0004812: aminoacyl-tRNA ligase activity6.45E-05
11GO:0001872: (1->3)-beta-D-glucan binding8.48E-05
12GO:0008237: metallopeptidase activity2.00E-04
13GO:0051777: ent-kaurenoate oxidase activity5.18E-04
14GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.18E-04
15GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.18E-04
16GO:0004813: alanine-tRNA ligase activity5.18E-04
17GO:0004008: copper-exporting ATPase activity5.18E-04
18GO:0004832: valine-tRNA ligase activity5.18E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.18E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.18E-04
21GO:0004830: tryptophan-tRNA ligase activity5.18E-04
22GO:0010285: L,L-diaminopimelate aminotransferase activity5.18E-04
23GO:0052381: tRNA dimethylallyltransferase activity5.18E-04
24GO:0004160: dihydroxy-acid dehydratase activity5.18E-04
25GO:0019843: rRNA binding6.65E-04
26GO:0004519: endonuclease activity7.07E-04
27GO:0003747: translation release factor activity9.82E-04
28GO:0016415: octanoyltransferase activity1.11E-03
29GO:0019156: isoamylase activity1.11E-03
30GO:0003919: FMN adenylyltransferase activity1.11E-03
31GO:0017118: lipoyltransferase activity1.11E-03
32GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.24E-03
33GO:0052692: raffinose alpha-galactosidase activity1.82E-03
34GO:0070330: aromatase activity1.82E-03
35GO:0002161: aminoacyl-tRNA editing activity1.82E-03
36GO:0042781: 3'-tRNA processing endoribonuclease activity1.82E-03
37GO:0004557: alpha-galactosidase activity1.82E-03
38GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.29E-03
39GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.64E-03
40GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.64E-03
41GO:0009678: hydrogen-translocating pyrophosphatase activity2.64E-03
42GO:0016149: translation release factor activity, codon specific2.64E-03
43GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.64E-03
44GO:0035197: siRNA binding2.64E-03
45GO:0043023: ribosomal large subunit binding2.64E-03
46GO:0004222: metalloendopeptidase activity2.76E-03
47GO:0003723: RNA binding3.21E-03
48GO:0016829: lyase activity3.50E-03
49GO:0004845: uracil phosphoribosyltransferase activity3.56E-03
50GO:0016836: hydro-lyase activity3.56E-03
51GO:0043015: gamma-tubulin binding3.56E-03
52GO:0005253: anion channel activity3.56E-03
53GO:0019199: transmembrane receptor protein kinase activity3.56E-03
54GO:0042277: peptide binding3.56E-03
55GO:0008891: glycolate oxidase activity3.56E-03
56GO:0046556: alpha-L-arabinofuranosidase activity3.56E-03
57GO:0004659: prenyltransferase activity3.56E-03
58GO:0016279: protein-lysine N-methyltransferase activity3.56E-03
59GO:0004185: serine-type carboxypeptidase activity4.56E-03
60GO:0018685: alkane 1-monooxygenase activity4.57E-03
61GO:0016773: phosphotransferase activity, alcohol group as acceptor4.57E-03
62GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.57E-03
63GO:0030570: pectate lyase activity4.62E-03
64GO:0030983: mismatched DNA binding5.66E-03
65GO:0004605: phosphatidate cytidylyltransferase activity5.66E-03
66GO:0080030: methyl indole-3-acetate esterase activity5.66E-03
67GO:1990714: hydroxyproline O-galactosyltransferase activity5.66E-03
68GO:0004332: fructose-bisphosphate aldolase activity5.66E-03
69GO:0004526: ribonuclease P activity5.66E-03
70GO:0004556: alpha-amylase activity5.66E-03
71GO:0005247: voltage-gated chloride channel activity5.66E-03
72GO:0004124: cysteine synthase activity6.83E-03
73GO:0008195: phosphatidate phosphatase activity6.83E-03
74GO:0004849: uridine kinase activity6.83E-03
75GO:0003730: mRNA 3'-UTR binding6.83E-03
76GO:0004656: procollagen-proline 4-dioxygenase activity6.83E-03
77GO:0004427: inorganic diphosphatase activity8.09E-03
78GO:0043022: ribosome binding9.42E-03
79GO:0003684: damaged DNA binding9.56E-03
80GO:0016788: hydrolase activity, acting on ester bonds1.02E-02
81GO:0008173: RNA methyltransferase activity1.08E-02
82GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.08E-02
83GO:0005375: copper ion transmembrane transporter activity1.08E-02
84GO:0016597: amino acid binding1.08E-02
85GO:0005524: ATP binding1.30E-02
86GO:0030247: polysaccharide binding1.35E-02
87GO:0009672: auxin:proton symporter activity1.38E-02
88GO:0004805: trehalose-phosphatase activity1.55E-02
89GO:0016887: ATPase activity1.57E-02
90GO:0044183: protein binding involved in protein folding1.71E-02
91GO:0005525: GTP binding1.72E-02
92GO:0004521: endoribonuclease activity1.89E-02
93GO:0000049: tRNA binding1.89E-02
94GO:0005262: calcium channel activity2.07E-02
95GO:0009982: pseudouridine synthase activity2.07E-02
96GO:0004565: beta-galactosidase activity2.07E-02
97GO:0010329: auxin efflux transmembrane transporter activity2.07E-02
98GO:0015266: protein channel activity2.07E-02
99GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.07E-02
100GO:0004089: carbonate dehydratase activity2.07E-02
101GO:0003887: DNA-directed DNA polymerase activity2.64E-02
102GO:0043621: protein self-association2.66E-02
103GO:0031418: L-ascorbic acid binding2.84E-02
104GO:0008408: 3'-5' exonuclease activity3.26E-02
105GO:0030246: carbohydrate binding3.26E-02
106GO:0033612: receptor serine/threonine kinase binding3.26E-02
107GO:0003727: single-stranded RNA binding3.93E-02
108GO:0047134: protein-disulfide reductase activity4.16E-02
109GO:0004650: polygalacturonase activity4.29E-02
110GO:0004527: exonuclease activity4.64E-02
111GO:0004791: thioredoxin-disulfide reductase activity4.88E-02
112GO:0016853: isomerase activity4.88E-02
113GO:0010181: FMN binding4.88E-02
114GO:0008026: ATP-dependent helicase activity4.97E-02
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Gene type



Gene DE type