Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G52190

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
2GO:0097275: cellular ammonia homeostasis0.00E+00
3GO:0017038: protein import0.00E+00
4GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
5GO:0031054: pre-miRNA processing0.00E+00
6GO:2000121: regulation of removal of superoxide radicals0.00E+00
7GO:0051924: regulation of calcium ion transport0.00E+00
8GO:0090279: regulation of calcium ion import0.00E+00
9GO:0042817: pyridoxal metabolic process0.00E+00
10GO:0015882: L-ascorbic acid transport0.00E+00
11GO:0018023: peptidyl-lysine trimethylation0.00E+00
12GO:0071474: cellular hyperosmotic response0.00E+00
13GO:2001294: malonyl-CoA catabolic process0.00E+00
14GO:0009647: skotomorphogenesis4.07E-05
15GO:0006021: inositol biosynthetic process7.23E-05
16GO:0016120: carotene biosynthetic process1.13E-04
17GO:0009904: chloroplast accumulation movement1.13E-04
18GO:0045038: protein import into chloroplast thylakoid membrane1.13E-04
19GO:0009903: chloroplast avoidance movement2.22E-04
20GO:1902458: positive regulation of stomatal opening3.40E-04
21GO:0010028: xanthophyll cycle3.40E-04
22GO:0034337: RNA folding3.40E-04
23GO:0051171: regulation of nitrogen compound metabolic process3.40E-04
24GO:0010362: negative regulation of anion channel activity by blue light3.40E-04
25GO:0031426: polycistronic mRNA processing3.40E-04
26GO:0043266: regulation of potassium ion transport3.40E-04
27GO:0000481: maturation of 5S rRNA3.40E-04
28GO:0006659: phosphatidylserine biosynthetic process3.40E-04
29GO:0043686: co-translational protein modification3.40E-04
30GO:0043087: regulation of GTPase activity3.40E-04
31GO:2000021: regulation of ion homeostasis3.40E-04
32GO:2000070: regulation of response to water deprivation3.64E-04
33GO:0007018: microtubule-based movement4.11E-04
34GO:0009416: response to light stimulus5.08E-04
35GO:0016032: viral process5.35E-04
36GO:1900865: chloroplast RNA modification6.32E-04
37GO:0010155: regulation of proton transport7.40E-04
38GO:1903426: regulation of reactive oxygen species biosynthetic process7.40E-04
39GO:0006568: tryptophan metabolic process7.40E-04
40GO:0015804: neutral amino acid transport7.40E-04
41GO:0051262: protein tetramerization7.40E-04
42GO:0006739: NADP metabolic process7.40E-04
43GO:0030187: melatonin biosynthetic process7.40E-04
44GO:0007154: cell communication7.40E-04
45GO:0018026: peptidyl-lysine monomethylation7.40E-04
46GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation7.40E-04
47GO:0000256: allantoin catabolic process7.40E-04
48GO:1900033: negative regulation of trichome patterning7.40E-04
49GO:0009684: indoleacetic acid biosynthetic process8.49E-04
50GO:0015995: chlorophyll biosynthetic process9.63E-04
51GO:0000913: preprophase band assembly1.20E-03
52GO:0033591: response to L-ascorbic acid1.20E-03
53GO:0031022: nuclear migration along microfilament1.20E-03
54GO:0019419: sulfate reduction1.20E-03
55GO:0010136: ureide catabolic process1.20E-03
56GO:0010589: leaf proximal/distal pattern formation1.20E-03
57GO:0009405: pathogenesis1.20E-03
58GO:0051604: protein maturation1.20E-03
59GO:0006753: nucleoside phosphate metabolic process1.20E-03
60GO:0045493: xylan catabolic process1.20E-03
61GO:0019853: L-ascorbic acid biosynthetic process1.38E-03
62GO:0042753: positive regulation of circadian rhythm1.54E-03
63GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.72E-03
64GO:0006166: purine ribonucleoside salvage1.72E-03
65GO:0009102: biotin biosynthetic process1.72E-03
66GO:1901000: regulation of response to salt stress1.72E-03
67GO:0010239: chloroplast mRNA processing1.72E-03
68GO:0008615: pyridoxine biosynthetic process1.72E-03
69GO:0006145: purine nucleobase catabolic process1.72E-03
70GO:0010255: glucose mediated signaling pathway1.72E-03
71GO:0046739: transport of virus in multicellular host1.72E-03
72GO:0006164: purine nucleotide biosynthetic process1.72E-03
73GO:0006168: adenine salvage1.72E-03
74GO:0009963: positive regulation of flavonoid biosynthetic process1.72E-03
75GO:0007623: circadian rhythm1.92E-03
76GO:0048629: trichome patterning2.31E-03
77GO:0010109: regulation of photosynthesis2.31E-03
78GO:0009765: photosynthesis, light harvesting2.31E-03
79GO:0035279: mRNA cleavage involved in gene silencing by miRNA2.31E-03
80GO:0009649: entrainment of circadian clock2.31E-03
81GO:0006734: NADH metabolic process2.31E-03
82GO:0008295: spermidine biosynthetic process2.31E-03
83GO:0016117: carotenoid biosynthetic process2.90E-03
84GO:0031365: N-terminal protein amino acid modification2.96E-03
85GO:0016123: xanthophyll biosynthetic process2.96E-03
86GO:0044209: AMP salvage2.96E-03
87GO:0034052: positive regulation of plant-type hypersensitive response2.96E-03
88GO:0046283: anthocyanin-containing compound metabolic process2.96E-03
89GO:0010236: plastoquinone biosynthetic process2.96E-03
90GO:0009585: red, far-red light phototransduction2.97E-03
91GO:0045489: pectin biosynthetic process3.38E-03
92GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.65E-03
93GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.65E-03
94GO:0016554: cytidine to uridine editing3.65E-03
95GO:0048831: regulation of shoot system development3.65E-03
96GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.65E-03
97GO:0046855: inositol phosphate dephosphorylation3.65E-03
98GO:0009791: post-embryonic development3.89E-03
99GO:0009648: photoperiodism4.40E-03
100GO:0042372: phylloquinone biosynthetic process4.40E-03
101GO:0048280: vesicle fusion with Golgi apparatus4.40E-03
102GO:0030488: tRNA methylation4.40E-03
103GO:0035196: production of miRNAs involved in gene silencing by miRNA5.19E-03
104GO:0015937: coenzyme A biosynthetic process5.19E-03
105GO:0016559: peroxisome fission6.03E-03
106GO:0007155: cell adhesion6.03E-03
107GO:0016126: sterol biosynthetic process6.03E-03
108GO:0043068: positive regulation of programmed cell death6.03E-03
109GO:0006605: protein targeting6.03E-03
110GO:0010078: maintenance of root meristem identity6.03E-03
111GO:0032508: DNA duplex unwinding6.03E-03
112GO:0010027: thylakoid membrane organization6.03E-03
113GO:0043562: cellular response to nitrogen levels6.92E-03
114GO:0015996: chlorophyll catabolic process6.92E-03
115GO:0007186: G-protein coupled receptor signaling pathway6.92E-03
116GO:0098656: anion transmembrane transport7.85E-03
117GO:0010206: photosystem II repair7.85E-03
118GO:0048507: meristem development7.85E-03
119GO:0006783: heme biosynthetic process7.85E-03
120GO:0006189: 'de novo' IMP biosynthetic process7.85E-03
121GO:0000160: phosphorelay signal transduction system8.28E-03
122GO:0006811: ion transport8.69E-03
123GO:0009638: phototropism8.82E-03
124GO:0010267: production of ta-siRNAs involved in RNA interference8.82E-03
125GO:0010018: far-red light signaling pathway8.82E-03
126GO:0048354: mucilage biosynthetic process involved in seed coat development8.82E-03
127GO:0010380: regulation of chlorophyll biosynthetic process8.82E-03
128GO:0010119: regulation of stomatal movement9.11E-03
129GO:0045490: pectin catabolic process9.37E-03
130GO:0045036: protein targeting to chloroplast9.84E-03
131GO:0009641: shade avoidance9.84E-03
132GO:0010192: mucilage biosynthetic process9.84E-03
133GO:0006896: Golgi to vacuole transport9.84E-03
134GO:0006782: protoporphyrinogen IX biosynthetic process9.84E-03
135GO:0000103: sulfate assimilation9.84E-03
136GO:0055114: oxidation-reduction process1.06E-02
137GO:1903507: negative regulation of nucleic acid-templated transcription1.09E-02
138GO:0000272: polysaccharide catabolic process1.09E-02
139GO:0018119: peptidyl-cysteine S-nitrosylation1.09E-02
140GO:0006631: fatty acid metabolic process1.19E-02
141GO:0006790: sulfur compound metabolic process1.20E-02
142GO:0016024: CDP-diacylglycerol biosynthetic process1.20E-02
143GO:0045037: protein import into chloroplast stroma1.20E-02
144GO:0009640: photomorphogenesis1.29E-02
145GO:0030036: actin cytoskeleton organization1.31E-02
146GO:0009718: anthocyanin-containing compound biosynthetic process1.31E-02
147GO:0009767: photosynthetic electron transport chain1.31E-02
148GO:0030048: actin filament-based movement1.31E-02
149GO:0010588: cotyledon vascular tissue pattern formation1.31E-02
150GO:0009785: blue light signaling pathway1.31E-02
151GO:0006006: glucose metabolic process1.31E-02
152GO:0009266: response to temperature stimulus1.43E-02
153GO:0048467: gynoecium development1.43E-02
154GO:0010143: cutin biosynthetic process1.43E-02
155GO:0010207: photosystem II assembly1.43E-02
156GO:0006541: glutamine metabolic process1.43E-02
157GO:0010020: chloroplast fission1.43E-02
158GO:0019253: reductive pentose-phosphate cycle1.43E-02
159GO:0046854: phosphatidylinositol phosphorylation1.55E-02
160GO:0009825: multidimensional cell growth1.55E-02
161GO:0000162: tryptophan biosynthetic process1.67E-02
162GO:0019344: cysteine biosynthetic process1.80E-02
163GO:0080147: root hair cell development1.80E-02
164GO:0000027: ribosomal large subunit assembly1.80E-02
165GO:0007010: cytoskeleton organization1.80E-02
166GO:0006289: nucleotide-excision repair1.80E-02
167GO:0010187: negative regulation of seed germination1.80E-02
168GO:0010073: meristem maintenance1.93E-02
169GO:0008299: isoprenoid biosynthetic process1.93E-02
170GO:0007017: microtubule-based process1.93E-02
171GO:0009723: response to ethylene1.96E-02
172GO:0048511: rhythmic process2.07E-02
173GO:0048278: vesicle docking2.07E-02
174GO:0003333: amino acid transmembrane transport2.07E-02
175GO:0009814: defense response, incompatible interaction2.21E-02
176GO:0010017: red or far-red light signaling pathway2.21E-02
177GO:2000022: regulation of jasmonic acid mediated signaling pathway2.21E-02
178GO:0006012: galactose metabolic process2.35E-02
179GO:0051028: mRNA transport2.64E-02
180GO:0042147: retrograde transport, endosome to Golgi2.64E-02
181GO:0006886: intracellular protein transport2.79E-02
182GO:0000271: polysaccharide biosynthetic process2.79E-02
183GO:0080022: primary root development2.79E-02
184GO:0010087: phloem or xylem histogenesis2.79E-02
185GO:0009958: positive gravitropism2.94E-02
186GO:0010305: leaf vascular tissue pattern formation2.94E-02
187GO:0010182: sugar mediated signaling pathway2.94E-02
188GO:0061025: membrane fusion3.10E-02
189GO:0009646: response to absence of light3.10E-02
190GO:0009851: auxin biosynthetic process3.25E-02
191GO:0006623: protein targeting to vacuole3.25E-02
192GO:0010183: pollen tube guidance3.25E-02
193GO:0048825: cotyledon development3.25E-02
194GO:0008654: phospholipid biosynthetic process3.25E-02
195GO:0006891: intra-Golgi vesicle-mediated transport3.42E-02
196GO:0010583: response to cyclopentenone3.58E-02
197GO:0009409: response to cold3.68E-02
198GO:1901657: glycosyl compound metabolic process3.75E-02
199GO:0030163: protein catabolic process3.75E-02
200GO:0010090: trichome morphogenesis3.75E-02
201GO:0009639: response to red or far red light3.92E-02
202GO:0006413: translational initiation4.00E-02
203GO:0000910: cytokinesis4.26E-02
204GO:0009627: systemic acquired resistance4.80E-02
205GO:0006906: vesicle fusion4.80E-02
206GO:0010411: xyloglucan metabolic process4.98E-02
207GO:0048573: photoperiodism, flowering4.98E-02
208GO:0006888: ER to Golgi vesicle-mediated transport4.98E-02
RankGO TermAdjusted P value
1GO:0036033: mediator complex binding0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0004076: biotin synthase activity0.00E+00
4GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
5GO:0010349: L-galactose dehydrogenase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0050613: delta14-sterol reductase activity0.00E+00
9GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
10GO:0016166: phytoene dehydrogenase activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0015229: L-ascorbic acid transporter activity0.00E+00
13GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
14GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
15GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
16GO:0008017: microtubule binding6.30E-05
17GO:0000293: ferric-chelate reductase activity1.63E-04
18GO:0030570: pectate lyase activity2.43E-04
19GO:0010347: L-galactose-1-phosphate phosphatase activity3.40E-04
20GO:0050139: nicotinate-N-glucosyltransferase activity3.40E-04
21GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.40E-04
22GO:0005227: calcium activated cation channel activity3.40E-04
23GO:0004425: indole-3-glycerol-phosphate synthase activity3.40E-04
24GO:0004733: pyridoxamine-phosphate oxidase activity3.40E-04
25GO:0010945: CoA pyrophosphatase activity3.40E-04
26GO:0004853: uroporphyrinogen decarboxylase activity3.40E-04
27GO:0042586: peptide deformylase activity3.40E-04
28GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.40E-04
29GO:0052856: NADHX epimerase activity3.40E-04
30GO:0052857: NADPHX epimerase activity3.40E-04
31GO:0003777: microtubule motor activity5.74E-04
32GO:0042802: identical protein binding5.87E-04
33GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity7.40E-04
34GO:0033741: adenylyl-sulfate reductase (glutathione) activity7.40E-04
35GO:0004766: spermidine synthase activity7.40E-04
36GO:0052832: inositol monophosphate 3-phosphatase activity7.40E-04
37GO:0009973: adenylyl-sulfate reductase activity7.40E-04
38GO:0080097: L-tryptophan:pyruvate aminotransferase activity7.40E-04
39GO:0016630: protochlorophyllide reductase activity7.40E-04
40GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity7.40E-04
41GO:0008934: inositol monophosphate 1-phosphatase activity7.40E-04
42GO:0052833: inositol monophosphate 4-phosphatase activity7.40E-04
43GO:0004512: inositol-3-phosphate synthase activity7.40E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.40E-04
45GO:0015172: acidic amino acid transmembrane transporter activity7.40E-04
46GO:0048531: beta-1,3-galactosyltransferase activity7.40E-04
47GO:0070402: NADPH binding1.20E-03
48GO:0004049: anthranilate synthase activity1.20E-03
49GO:0015462: ATPase-coupled protein transmembrane transporter activity1.20E-03
50GO:0005504: fatty acid binding1.20E-03
51GO:0003913: DNA photolyase activity1.20E-03
52GO:0004848: ureidoglycolate hydrolase activity1.20E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.20E-03
54GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.23E-03
55GO:0016829: lyase activity1.33E-03
56GO:0035198: miRNA binding1.72E-03
57GO:0000254: C-4 methylsterol oxidase activity1.72E-03
58GO:0015175: neutral amino acid transmembrane transporter activity1.72E-03
59GO:0048027: mRNA 5'-UTR binding1.72E-03
60GO:0003999: adenine phosphoribosyltransferase activity1.72E-03
61GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.72E-03
62GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.72E-03
63GO:0016851: magnesium chelatase activity1.72E-03
64GO:0009882: blue light photoreceptor activity1.72E-03
65GO:0016279: protein-lysine N-methyltransferase activity2.31E-03
66GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.31E-03
67GO:0070628: proteasome binding2.31E-03
68GO:0045430: chalcone isomerase activity2.31E-03
69GO:0009044: xylan 1,4-beta-xylosidase activity2.31E-03
70GO:0046556: alpha-L-arabinofuranosidase activity2.31E-03
71GO:0016846: carbon-sulfur lyase activity2.96E-03
72GO:0004040: amidase activity2.96E-03
73GO:0010181: FMN binding3.63E-03
74GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.65E-03
75GO:0031593: polyubiquitin binding3.65E-03
76GO:0000210: NAD+ diphosphatase activity3.65E-03
77GO:0016208: AMP binding3.65E-03
78GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.65E-03
79GO:0102229: amylopectin maltohydrolase activity3.65E-03
80GO:0042578: phosphoric ester hydrolase activity3.65E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.40E-03
82GO:0016832: aldehyde-lyase activity4.40E-03
83GO:0016161: beta-amylase activity4.40E-03
84GO:0005261: cation channel activity4.40E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity4.40E-03
86GO:0009927: histidine phosphotransfer kinase activity4.40E-03
87GO:0005525: GTP binding4.96E-03
88GO:0005200: structural constituent of cytoskeleton5.37E-03
89GO:0043022: ribosome binding6.03E-03
90GO:0004033: aldo-keto reductase (NADP) activity6.03E-03
91GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen6.42E-03
92GO:0008173: RNA methyltransferase activity6.92E-03
93GO:0030247: polysaccharide binding7.10E-03
94GO:0008236: serine-type peptidase activity7.48E-03
95GO:0003924: GTPase activity9.40E-03
96GO:0003993: acid phosphatase activity1.05E-02
97GO:0047372: acylglycerol lipase activity1.09E-02
98GO:0000149: SNARE binding1.09E-02
99GO:0005484: SNAP receptor activity1.29E-02
100GO:0000155: phosphorelay sensor kinase activity1.31E-02
101GO:0003725: double-stranded RNA binding1.31E-02
102GO:0008081: phosphoric diester hydrolase activity1.31E-02
103GO:0005315: inorganic phosphate transmembrane transporter activity1.31E-02
104GO:0035091: phosphatidylinositol binding1.40E-02
105GO:0003774: motor activity1.43E-02
106GO:0008146: sulfotransferase activity1.55E-02
107GO:0043130: ubiquitin binding1.80E-02
108GO:0003714: transcription corepressor activity1.80E-02
109GO:0051087: chaperone binding1.93E-02
110GO:0019706: protein-cysteine S-palmitoyltransferase activity2.07E-02
111GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.21E-02
112GO:0008514: organic anion transmembrane transporter activity2.49E-02
113GO:0016746: transferase activity, transferring acyl groups2.56E-02
114GO:0008080: N-acetyltransferase activity2.94E-02
115GO:0001085: RNA polymerase II transcription factor binding2.94E-02
116GO:0016853: isomerase activity3.10E-02
117GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.35E-02
118GO:0046872: metal ion binding3.50E-02
119GO:0016491: oxidoreductase activity3.51E-02
120GO:0000156: phosphorelay response regulator activity3.75E-02
121GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.75E-02
122GO:0004519: endonuclease activity3.87E-02
123GO:0003684: damaged DNA binding3.92E-02
124GO:0016791: phosphatase activity3.92E-02
125GO:0016722: oxidoreductase activity, oxidizing metal ions4.09E-02
126GO:0008237: metallopeptidase activity4.09E-02
127GO:0004672: protein kinase activity4.20E-02
128GO:0102483: scopolin beta-glucosidase activity4.98E-02
129GO:0004721: phosphoprotein phosphatase activity4.98E-02
130GO:0003743: translation initiation factor activity4.99E-02
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Gene type



Gene DE type