Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G50840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0043488: regulation of mRNA stability0.00E+00
3GO:0061157: mRNA destabilization0.00E+00
4GO:0090706: specification of plant organ position0.00E+00
5GO:0071000: response to magnetism0.00E+00
6GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
7GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
8GO:0009583: detection of light stimulus0.00E+00
9GO:0010068: protoderm histogenesis0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0031129: inductive cell-cell signaling0.00E+00
12GO:0007172: signal complex assembly0.00E+00
13GO:0009638: phototropism9.86E-06
14GO:0009067: aspartate family amino acid biosynthetic process1.87E-05
15GO:1902183: regulation of shoot apical meristem development5.47E-05
16GO:0010158: abaxial cell fate specification5.47E-05
17GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.20E-05
18GO:0009099: valine biosynthetic process1.11E-04
19GO:0009088: threonine biosynthetic process1.11E-04
20GO:0009082: branched-chain amino acid biosynthetic process1.11E-04
21GO:0009787: regulation of abscisic acid-activated signaling pathway1.88E-04
22GO:0072387: flavin adenine dinucleotide metabolic process2.18E-04
23GO:0043087: regulation of GTPase activity2.18E-04
24GO:0048508: embryonic meristem development2.18E-04
25GO:0006177: GMP biosynthetic process2.18E-04
26GO:0010450: inflorescence meristem growth2.18E-04
27GO:0051171: regulation of nitrogen compound metabolic process2.18E-04
28GO:0010482: regulation of epidermal cell division2.18E-04
29GO:0009090: homoserine biosynthetic process2.18E-04
30GO:1902265: abscisic acid homeostasis2.18E-04
31GO:0071028: nuclear mRNA surveillance2.18E-04
32GO:0009097: isoleucine biosynthetic process2.33E-04
33GO:2000024: regulation of leaf development2.82E-04
34GO:0009089: lysine biosynthetic process via diaminopimelate4.56E-04
35GO:0042814: monopolar cell growth4.86E-04
36GO:0031648: protein destabilization4.86E-04
37GO:0031125: rRNA 3'-end processing4.86E-04
38GO:0015804: neutral amino acid transport4.86E-04
39GO:0071051: polyadenylation-dependent snoRNA 3'-end processing4.86E-04
40GO:0006420: arginyl-tRNA aminoacylation4.86E-04
41GO:0010343: singlet oxygen-mediated programmed cell death4.86E-04
42GO:0034475: U4 snRNA 3'-end processing4.86E-04
43GO:1901529: positive regulation of anion channel activity4.86E-04
44GO:1900871: chloroplast mRNA modification4.86E-04
45GO:0010617: circadian regulation of calcium ion oscillation4.86E-04
46GO:2000039: regulation of trichome morphogenesis4.86E-04
47GO:0007154: cell communication4.86E-04
48GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation4.86E-04
49GO:0009945: radial axis specification4.86E-04
50GO:0099402: plant organ development4.86E-04
51GO:0006468: protein phosphorylation4.90E-04
52GO:0090351: seedling development7.45E-04
53GO:0016050: vesicle organization7.90E-04
54GO:0045165: cell fate commitment7.90E-04
55GO:0016075: rRNA catabolic process7.90E-04
56GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'7.90E-04
57GO:0031022: nuclear migration along microfilament7.90E-04
58GO:0051127: positive regulation of actin nucleation7.90E-04
59GO:1902448: positive regulation of shade avoidance7.90E-04
60GO:0043693: monoterpene biosynthetic process7.90E-04
61GO:0045604: regulation of epidermal cell differentiation7.90E-04
62GO:1901672: positive regulation of systemic acquired resistance7.90E-04
63GO:0051604: protein maturation7.90E-04
64GO:0009944: polarity specification of adaxial/abaxial axis9.15E-04
65GO:0010187: negative regulation of seed germination9.15E-04
66GO:0006166: purine ribonucleoside salvage1.13E-03
67GO:0007231: osmosensory signaling pathway1.13E-03
68GO:0051639: actin filament network formation1.13E-03
69GO:0048645: animal organ formation1.13E-03
70GO:0010255: glucose mediated signaling pathway1.13E-03
71GO:0015696: ammonium transport1.13E-03
72GO:0048530: fruit morphogenesis1.13E-03
73GO:1901332: negative regulation of lateral root development1.13E-03
74GO:0006168: adenine salvage1.13E-03
75GO:0006164: purine nucleotide biosynthetic process1.13E-03
76GO:0009585: red, far-red light phototransduction1.31E-03
77GO:0009165: nucleotide biosynthetic process1.50E-03
78GO:0051764: actin crosslink formation1.50E-03
79GO:0051322: anaphase1.50E-03
80GO:0033500: carbohydrate homeostasis1.50E-03
81GO:0072488: ammonium transmembrane transport1.50E-03
82GO:0044205: 'de novo' UMP biosynthetic process1.50E-03
83GO:1902347: response to strigolactone1.50E-03
84GO:0009902: chloroplast relocation1.50E-03
85GO:0010154: fruit development1.78E-03
86GO:0009740: gibberellic acid mediated signaling pathway1.90E-03
87GO:0044209: AMP salvage1.91E-03
88GO:0016131: brassinosteroid metabolic process1.91E-03
89GO:0010117: photoprotection1.91E-03
90GO:0046283: anthocyanin-containing compound metabolic process1.91E-03
91GO:0006544: glycine metabolic process1.91E-03
92GO:0045038: protein import into chloroplast thylakoid membrane1.91E-03
93GO:0009646: response to absence of light1.92E-03
94GO:0009851: auxin biosynthetic process2.06E-03
95GO:0046777: protein autophosphorylation2.14E-03
96GO:0006563: L-serine metabolic process2.35E-03
97GO:0009959: negative gravitropism2.35E-03
98GO:0010583: response to cyclopentenone2.35E-03
99GO:0060918: auxin transport2.35E-03
100GO:0006139: nucleobase-containing compound metabolic process2.35E-03
101GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.35E-03
102GO:1901371: regulation of leaf morphogenesis2.35E-03
103GO:0009635: response to herbicide2.35E-03
104GO:0009903: chloroplast avoidance movement2.83E-03
105GO:0048444: floral organ morphogenesis2.83E-03
106GO:0010310: regulation of hydrogen peroxide metabolic process2.83E-03
107GO:0042372: phylloquinone biosynthetic process2.83E-03
108GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.83E-03
109GO:0009942: longitudinal axis specification2.83E-03
110GO:0010161: red light signaling pathway3.33E-03
111GO:0009610: response to symbiotic fungus3.33E-03
112GO:0051510: regulation of unidimensional cell growth3.33E-03
113GO:0010029: regulation of seed germination3.35E-03
114GO:0033386: geranylgeranyl diphosphate biosynthetic process3.86E-03
115GO:0010078: maintenance of root meristem identity3.86E-03
116GO:0009704: de-etiolation3.86E-03
117GO:0007623: circadian rhythm4.10E-03
118GO:0030244: cellulose biosynthetic process4.12E-03
119GO:0043562: cellular response to nitrogen levels4.42E-03
120GO:0009808: lignin metabolic process4.42E-03
121GO:0010093: specification of floral organ identity4.42E-03
122GO:0010099: regulation of photomorphogenesis4.42E-03
123GO:0006002: fructose 6-phosphate metabolic process4.42E-03
124GO:0010100: negative regulation of photomorphogenesis4.42E-03
125GO:0006526: arginine biosynthetic process4.42E-03
126GO:0006865: amino acid transport4.99E-03
127GO:0000373: Group II intron splicing5.00E-03
128GO:0006189: 'de novo' IMP biosynthetic process5.00E-03
129GO:0051865: protein autoubiquitination5.00E-03
130GO:0009051: pentose-phosphate shunt, oxidative branch5.00E-03
131GO:0045337: farnesyl diphosphate biosynthetic process5.00E-03
132GO:0033384: geranyl diphosphate biosynthetic process5.00E-03
133GO:0006783: heme biosynthetic process5.00E-03
134GO:0009637: response to blue light5.22E-03
135GO:1900426: positive regulation of defense response to bacterium5.62E-03
136GO:0009098: leucine biosynthetic process5.62E-03
137GO:0010018: far-red light signaling pathway5.62E-03
138GO:0009086: methionine biosynthetic process5.62E-03
139GO:1900865: chloroplast RNA modification5.62E-03
140GO:0010380: regulation of chlorophyll biosynthetic process5.62E-03
141GO:0010192: mucilage biosynthetic process6.25E-03
142GO:0009299: mRNA transcription6.25E-03
143GO:0006535: cysteine biosynthetic process from serine6.25E-03
144GO:0009684: indoleacetic acid biosynthetic process6.91E-03
145GO:0006816: calcium ion transport6.91E-03
146GO:0009773: photosynthetic electron transport in photosystem I6.91E-03
147GO:0006415: translational termination6.91E-03
148GO:0009644: response to high light intensity7.28E-03
149GO:0010152: pollen maturation7.60E-03
150GO:0030036: actin cytoskeleton organization8.30E-03
151GO:0010075: regulation of meristem growth8.30E-03
152GO:0009725: response to hormone8.30E-03
153GO:0030048: actin filament-based movement8.30E-03
154GO:0010588: cotyledon vascular tissue pattern formation8.30E-03
155GO:0010628: positive regulation of gene expression8.30E-03
156GO:0009785: blue light signaling pathway8.30E-03
157GO:0006006: glucose metabolic process8.30E-03
158GO:0009934: regulation of meristem structural organization9.03E-03
159GO:0048467: gynoecium development9.03E-03
160GO:0009933: meristem structural organization9.03E-03
161GO:0010030: positive regulation of seed germination9.79E-03
162GO:0070588: calcium ion transmembrane transport9.79E-03
163GO:0009833: plant-type primary cell wall biogenesis1.06E-02
164GO:0042753: positive regulation of circadian rhythm1.06E-02
165GO:0048367: shoot system development1.11E-02
166GO:2000377: regulation of reactive oxygen species metabolic process1.14E-02
167GO:0005992: trehalose biosynthetic process1.14E-02
168GO:0019344: cysteine biosynthetic process1.14E-02
169GO:0007010: cytoskeleton organization1.14E-02
170GO:0051017: actin filament bundle assembly1.14E-02
171GO:0016310: phosphorylation1.19E-02
172GO:0010073: meristem maintenance1.22E-02
173GO:0008299: isoprenoid biosynthetic process1.22E-02
174GO:0051260: protein homooligomerization1.30E-02
175GO:0003333: amino acid transmembrane transport1.30E-02
176GO:0010017: red or far-red light signaling pathway1.39E-02
177GO:2000022: regulation of jasmonic acid mediated signaling pathway1.39E-02
178GO:0035428: hexose transmembrane transport1.39E-02
179GO:0009686: gibberellin biosynthetic process1.48E-02
180GO:0010091: trichome branching1.57E-02
181GO:0055114: oxidation-reduction process1.58E-02
182GO:0016117: carotenoid biosynthetic process1.66E-02
183GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.66E-02
184GO:0010087: phloem or xylem histogenesis1.75E-02
185GO:0010118: stomatal movement1.75E-02
186GO:0048653: anther development1.75E-02
187GO:0042631: cellular response to water deprivation1.75E-02
188GO:0000226: microtubule cytoskeleton organization1.75E-02
189GO:0000271: polysaccharide biosynthetic process1.75E-02
190GO:0080022: primary root development1.75E-02
191GO:0042335: cuticle development1.75E-02
192GO:0010182: sugar mediated signaling pathway1.85E-02
193GO:0046323: glucose import1.85E-02
194GO:0008360: regulation of cell shape1.85E-02
195GO:0009958: positive gravitropism1.85E-02
196GO:0045489: pectin biosynthetic process1.85E-02
197GO:0042752: regulation of circadian rhythm1.95E-02
198GO:0048825: cotyledon development2.05E-02
199GO:0040008: regulation of growth2.14E-02
200GO:0016132: brassinosteroid biosynthetic process2.15E-02
201GO:0032502: developmental process2.25E-02
202GO:0009639: response to red or far red light2.46E-02
203GO:0006464: cellular protein modification process2.46E-02
204GO:0007165: signal transduction2.54E-02
205GO:0007166: cell surface receptor signaling pathway2.57E-02
206GO:0071805: potassium ion transmembrane transport2.57E-02
207GO:0000910: cytokinesis2.68E-02
208GO:0016126: sterol biosynthetic process2.79E-02
209GO:0009735: response to cytokinin2.84E-02
210GO:0015995: chlorophyll biosynthetic process3.14E-02
211GO:0009416: response to light stimulus3.17E-02
212GO:0009826: unidimensional cell growth3.34E-02
213GO:0018298: protein-chromophore linkage3.37E-02
214GO:0009658: chloroplast organization3.47E-02
215GO:0000160: phosphorelay signal transduction system3.49E-02
216GO:0009813: flavonoid biosynthetic process3.49E-02
217GO:0009832: plant-type cell wall biogenesis3.49E-02
218GO:0010218: response to far red light3.62E-02
219GO:0009910: negative regulation of flower development3.74E-02
220GO:0048527: lateral root development3.74E-02
221GO:0009853: photorespiration3.99E-02
222GO:0016051: carbohydrate biosynthetic process3.99E-02
223GO:0009723: response to ethylene4.01E-02
224GO:0006839: mitochondrial transport4.38E-02
225GO:0006897: endocytosis4.51E-02
226GO:0006631: fatty acid metabolic process4.51E-02
227GO:0010114: response to red light4.78E-02
228GO:0051707: response to other organism4.78E-02
229GO:0009640: photomorphogenesis4.78E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
3GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0004072: aspartate kinase activity1.87E-05
6GO:0005524: ATP binding8.28E-05
7GO:0016301: kinase activity1.65E-04
8GO:0050139: nicotinate-N-glucosyltransferase activity2.18E-04
9GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity2.18E-04
10GO:0003984: acetolactate synthase activity2.18E-04
11GO:0010313: phytochrome binding2.18E-04
12GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.18E-04
13GO:0004674: protein serine/threonine kinase activity3.29E-04
14GO:0015172: acidic amino acid transmembrane transporter activity4.86E-04
15GO:0050017: L-3-cyanoalanine synthase activity4.86E-04
16GO:0017118: lipoyltransferase activity4.86E-04
17GO:0043425: bHLH transcription factor binding4.86E-04
18GO:0004814: arginine-tRNA ligase activity4.86E-04
19GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity4.86E-04
20GO:0003938: IMP dehydrogenase activity4.86E-04
21GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity4.86E-04
22GO:0080097: L-tryptophan:pyruvate aminotransferase activity4.86E-04
23GO:0004412: homoserine dehydrogenase activity4.86E-04
24GO:0050661: NADP binding7.78E-04
25GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity7.90E-04
26GO:0043621: protein self-association9.99E-04
27GO:0042802: identical protein binding1.04E-03
28GO:0009882: blue light photoreceptor activity1.13E-03
29GO:0052654: L-leucine transaminase activity1.13E-03
30GO:0052655: L-valine transaminase activity1.13E-03
31GO:0000254: C-4 methylsterol oxidase activity1.13E-03
32GO:0015175: neutral amino acid transmembrane transporter activity1.13E-03
33GO:0003999: adenine phosphoribosyltransferase activity1.13E-03
34GO:0052656: L-isoleucine transaminase activity1.13E-03
35GO:0004737: pyruvate decarboxylase activity1.50E-03
36GO:0004345: glucose-6-phosphate dehydrogenase activity1.50E-03
37GO:0004084: branched-chain-amino-acid transaminase activity1.50E-03
38GO:0004372: glycine hydroxymethyltransferase activity1.91E-03
39GO:0016846: carbon-sulfur lyase activity1.91E-03
40GO:0016773: phosphotransferase activity, alcohol group as acceptor1.91E-03
41GO:0008519: ammonium transmembrane transporter activity2.35E-03
42GO:0030976: thiamine pyrophosphate binding2.35E-03
43GO:0004709: MAP kinase kinase kinase activity2.35E-03
44GO:0016208: AMP binding2.35E-03
45GO:0004124: cysteine synthase activity2.83E-03
46GO:0003730: mRNA 3'-UTR binding2.83E-03
47GO:0016597: amino acid binding2.99E-03
48GO:0003872: 6-phosphofructokinase activity3.33E-03
49GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.75E-03
50GO:0103075: indole-3-pyruvate monooxygenase activity3.86E-03
51GO:0004311: farnesyltranstransferase activity3.86E-03
52GO:0008017: microtubule binding4.35E-03
53GO:0004672: protein kinase activity4.40E-03
54GO:0003747: translation release factor activity5.00E-03
55GO:0004337: geranyltranstransferase activity5.00E-03
56GO:0071949: FAD binding5.00E-03
57GO:0004805: trehalose-phosphatase activity6.25E-03
58GO:0004713: protein tyrosine kinase activity6.25E-03
59GO:0004161: dimethylallyltranstransferase activity6.91E-03
60GO:0005089: Rho guanyl-nucleotide exchange factor activity6.91E-03
61GO:0035091: phosphatidylinositol binding7.28E-03
62GO:0005262: calcium channel activity8.30E-03
63GO:0000175: 3'-5'-exoribonuclease activity8.30E-03
64GO:0050660: flavin adenine dinucleotide binding8.60E-03
65GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.03E-03
66GO:0004497: monooxygenase activity9.40E-03
67GO:0003777: microtubule motor activity1.01E-02
68GO:0015171: amino acid transmembrane transporter activity1.01E-02
69GO:0005515: protein binding1.05E-02
70GO:0005528: FK506 binding1.14E-02
71GO:0015079: potassium ion transmembrane transporter activity1.22E-02
72GO:0042803: protein homodimerization activity1.25E-02
73GO:0004871: signal transducer activity1.25E-02
74GO:0019706: protein-cysteine S-palmitoyltransferase activity1.30E-02
75GO:0008408: 3'-5' exonuclease activity1.30E-02
76GO:0004176: ATP-dependent peptidase activity1.30E-02
77GO:0033612: receptor serine/threonine kinase binding1.30E-02
78GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.39E-02
79GO:0016760: cellulose synthase (UDP-forming) activity1.48E-02
80GO:0030570: pectate lyase activity1.48E-02
81GO:0003727: single-stranded RNA binding1.57E-02
82GO:0008514: organic anion transmembrane transporter activity1.57E-02
83GO:0004499: N,N-dimethylaniline monooxygenase activity1.57E-02
84GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.67E-02
85GO:0004252: serine-type endopeptidase activity1.80E-02
86GO:0001085: RNA polymerase II transcription factor binding1.85E-02
87GO:0005355: glucose transmembrane transporter activity1.95E-02
88GO:0050662: coenzyme binding1.95E-02
89GO:0010181: FMN binding1.95E-02
90GO:0051015: actin filament binding2.36E-02
91GO:0000156: phosphorelay response regulator activity2.36E-02
92GO:0016759: cellulose synthase activity2.46E-02
93GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.57E-02
94GO:0008237: metallopeptidase activity2.57E-02
95GO:0046872: metal ion binding2.68E-02
96GO:0003824: catalytic activity2.77E-02
97GO:0004721: phosphoprotein phosphatase activity3.14E-02
98GO:0030247: polysaccharide binding3.14E-02
99GO:0005096: GTPase activator activity3.49E-02
100GO:0015238: drug transmembrane transporter activity3.49E-02
101GO:0004222: metalloendopeptidase activity3.62E-02
102GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.74E-02
103GO:0050897: cobalt ion binding3.74E-02
104GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.74E-02
105GO:0004712: protein serine/threonine/tyrosine kinase activity4.25E-02
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Gene type



Gene DE type