Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G49975

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006982: response to lipid hydroperoxide0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0010335: response to non-ionic osmotic stress0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0033494: ferulate metabolic process0.00E+00
8GO:0090470: shoot organ boundary specification0.00E+00
9GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0071474: cellular hyperosmotic response0.00E+00
12GO:0046471: phosphatidylglycerol metabolic process0.00E+00
13GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
14GO:0034337: RNA folding0.00E+00
15GO:0015995: chlorophyll biosynthetic process2.15E-12
16GO:0010207: photosystem II assembly4.44E-09
17GO:0015979: photosynthesis8.36E-09
18GO:0055114: oxidation-reduction process2.76E-08
19GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.96E-07
20GO:0009658: chloroplast organization1.84E-05
21GO:0071482: cellular response to light stimulus4.00E-05
22GO:2001141: regulation of RNA biosynthetic process8.09E-05
23GO:0019252: starch biosynthetic process1.05E-04
24GO:0009773: photosynthetic electron transport in photosystem I1.14E-04
25GO:0015994: chlorophyll metabolic process1.40E-04
26GO:0010021: amylopectin biosynthetic process1.40E-04
27GO:0009904: chloroplast accumulation movement2.15E-04
28GO:0010027: thylakoid membrane organization2.28E-04
29GO:0009903: chloroplast avoidance movement4.05E-04
30GO:0019748: secondary metabolic process4.69E-04
31GO:0010362: negative regulation of anion channel activity by blue light5.03E-04
32GO:0046467: membrane lipid biosynthetic process5.03E-04
33GO:0015969: guanosine tetraphosphate metabolic process5.03E-04
34GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.03E-04
35GO:0031426: polycistronic mRNA processing5.03E-04
36GO:0043489: RNA stabilization5.03E-04
37GO:1904966: positive regulation of vitamin E biosynthetic process5.03E-04
38GO:0000481: maturation of 5S rRNA5.03E-04
39GO:1904964: positive regulation of phytol biosynthetic process5.03E-04
40GO:0043953: protein transport by the Tat complex5.03E-04
41GO:0065002: intracellular protein transmembrane transport5.03E-04
42GO:0010426: DNA methylation on cytosine within a CHH sequence5.03E-04
43GO:0043686: co-translational protein modification5.03E-04
44GO:0043087: regulation of GTPase activity5.03E-04
45GO:0071461: cellular response to redox state5.03E-04
46GO:0051775: response to redox state5.03E-04
47GO:0071277: cellular response to calcium ion5.03E-04
48GO:0046167: glycerol-3-phosphate biosynthetic process5.03E-04
49GO:0043007: maintenance of rDNA5.03E-04
50GO:1902458: positive regulation of stomatal opening5.03E-04
51GO:0009704: de-etiolation6.48E-04
52GO:0016559: peroxisome fission6.48E-04
53GO:0032544: plastid translation7.90E-04
54GO:0030388: fructose 1,6-bisphosphate metabolic process1.08E-03
55GO:0051262: protein tetramerization1.08E-03
56GO:0080005: photosystem stoichiometry adjustment1.08E-03
57GO:0042819: vitamin B6 biosynthetic process1.08E-03
58GO:1902326: positive regulation of chlorophyll biosynthetic process1.08E-03
59GO:0006650: glycerophospholipid metabolic process1.08E-03
60GO:0010155: regulation of proton transport1.08E-03
61GO:0006729: tetrahydrobiopterin biosynthetic process1.08E-03
62GO:1903426: regulation of reactive oxygen species biosynthetic process1.08E-03
63GO:0015790: UDP-xylose transport1.08E-03
64GO:0006810: transport1.09E-03
65GO:0006352: DNA-templated transcription, initiation1.50E-03
66GO:0009735: response to cytokinin1.55E-03
67GO:0016024: CDP-diacylglycerol biosynthetic process1.71E-03
68GO:0000913: preprophase band assembly1.77E-03
69GO:0031022: nuclear migration along microfilament1.77E-03
70GO:0034051: negative regulation of plant-type hypersensitive response1.77E-03
71GO:0006000: fructose metabolic process1.77E-03
72GO:0046168: glycerol-3-phosphate catabolic process1.77E-03
73GO:0044375: regulation of peroxisome size1.77E-03
74GO:0032259: methylation1.77E-03
75GO:0005977: glycogen metabolic process1.77E-03
76GO:0006094: gluconeogenesis1.95E-03
77GO:0010143: cutin biosynthetic process2.20E-03
78GO:0018298: protein-chromophore linkage2.30E-03
79GO:0071484: cellular response to light intensity2.57E-03
80GO:0009152: purine ribonucleotide biosynthetic process2.57E-03
81GO:0046653: tetrahydrofolate metabolic process2.57E-03
82GO:0006107: oxaloacetate metabolic process2.57E-03
83GO:0010239: chloroplast mRNA processing2.57E-03
84GO:0009052: pentose-phosphate shunt, non-oxidative branch2.57E-03
85GO:0033014: tetrapyrrole biosynthetic process2.57E-03
86GO:0008615: pyridoxine biosynthetic process2.57E-03
87GO:0010731: protein glutathionylation2.57E-03
88GO:1901332: negative regulation of lateral root development2.57E-03
89GO:0006072: glycerol-3-phosphate metabolic process2.57E-03
90GO:0042823: pyridoxal phosphate biosynthetic process2.57E-03
91GO:0010371: regulation of gibberellin biosynthetic process2.57E-03
92GO:0006020: inositol metabolic process2.57E-03
93GO:0006636: unsaturated fatty acid biosynthetic process2.75E-03
94GO:0005975: carbohydrate metabolic process3.21E-03
95GO:0034599: cellular response to oxidative stress3.30E-03
96GO:0009768: photosynthesis, light harvesting in photosystem I3.37E-03
97GO:0045727: positive regulation of translation3.46E-03
98GO:0006546: glycine catabolic process3.46E-03
99GO:0006021: inositol biosynthetic process3.46E-03
100GO:0006734: NADH metabolic process3.46E-03
101GO:0010600: regulation of auxin biosynthetic process3.46E-03
102GO:0044550: secondary metabolite biosynthetic process3.99E-03
103GO:0000304: response to singlet oxygen4.44E-03
104GO:0006465: signal peptide processing4.44E-03
105GO:0006564: L-serine biosynthetic process4.44E-03
106GO:0045038: protein import into chloroplast thylakoid membrane4.44E-03
107GO:0031365: N-terminal protein amino acid modification4.44E-03
108GO:0009107: lipoate biosynthetic process4.44E-03
109GO:0007623: circadian rhythm4.76E-03
110GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.50E-03
111GO:0006655: phosphatidylglycerol biosynthetic process5.50E-03
112GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.50E-03
113GO:0046855: inositol phosphate dephosphorylation5.50E-03
114GO:0042549: photosystem II stabilization5.50E-03
115GO:0042631: cellular response to water deprivation5.65E-03
116GO:0006520: cellular amino acid metabolic process6.10E-03
117GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.63E-03
118GO:0010189: vitamin E biosynthetic process6.63E-03
119GO:0009854: oxidative photosynthetic carbon pathway6.63E-03
120GO:1901259: chloroplast rRNA processing6.63E-03
121GO:0009791: post-embryonic development7.04E-03
122GO:0009772: photosynthetic electron transport in photosystem II7.85E-03
123GO:1900057: positive regulation of leaf senescence7.85E-03
124GO:0009645: response to low light intensity stimulus7.85E-03
125GO:0010161: red light signaling pathway7.85E-03
126GO:0007155: cell adhesion9.14E-03
127GO:0048564: photosystem I assembly9.14E-03
128GO:0010928: regulation of auxin mediated signaling pathway9.14E-03
129GO:0032508: DNA duplex unwinding9.14E-03
130GO:2000070: regulation of response to water deprivation9.14E-03
131GO:0042255: ribosome assembly9.14E-03
132GO:0006353: DNA-templated transcription, termination9.14E-03
133GO:0009932: cell tip growth1.05E-02
134GO:0006002: fructose 6-phosphate metabolic process1.05E-02
135GO:0015996: chlorophyll catabolic process1.05E-02
136GO:0006526: arginine biosynthetic process1.05E-02
137GO:0007186: G-protein coupled receptor signaling pathway1.05E-02
138GO:0009657: plastid organization1.05E-02
139GO:0010206: photosystem II repair1.19E-02
140GO:0090333: regulation of stomatal closure1.19E-02
141GO:0006783: heme biosynthetic process1.19E-02
142GO:0006754: ATP biosynthetic process1.19E-02
143GO:0048507: meristem development1.19E-02
144GO:0010267: production of ta-siRNAs involved in RNA interference1.34E-02
145GO:0009638: phototropism1.34E-02
146GO:0006779: porphyrin-containing compound biosynthetic process1.34E-02
147GO:0009817: defense response to fungus, incompatible interaction1.43E-02
148GO:0006535: cysteine biosynthetic process from serine1.50E-02
149GO:0043069: negative regulation of programmed cell death1.50E-02
150GO:0019684: photosynthesis, light reaction1.66E-02
151GO:0000272: polysaccharide catabolic process1.66E-02
152GO:0008285: negative regulation of cell proliferation1.66E-02
153GO:0018119: peptidyl-cysteine S-nitrosylation1.66E-02
154GO:0007568: aging1.66E-02
155GO:0006633: fatty acid biosynthetic process1.77E-02
156GO:0009853: photorespiration1.82E-02
157GO:0006790: sulfur compound metabolic process1.83E-02
158GO:0045037: protein import into chloroplast stroma1.83E-02
159GO:0009767: photosynthetic electron transport chain2.01E-02
160GO:0005986: sucrose biosynthetic process2.01E-02
161GO:0006108: malate metabolic process2.01E-02
162GO:0009785: blue light signaling pathway2.01E-02
163GO:0018107: peptidyl-threonine phosphorylation2.01E-02
164GO:0009718: anthocyanin-containing compound biosynthetic process2.01E-02
165GO:0009725: response to hormone2.01E-02
166GO:0006631: fatty acid metabolic process2.17E-02
167GO:0034605: cellular response to heat2.18E-02
168GO:0010020: chloroplast fission2.18E-02
169GO:0019253: reductive pentose-phosphate cycle2.18E-02
170GO:0009266: response to temperature stimulus2.18E-02
171GO:0007031: peroxisome organization2.37E-02
172GO:0042343: indole glucosinolate metabolic process2.37E-02
173GO:0046854: phosphatidylinositol phosphorylation2.37E-02
174GO:0019762: glucosinolate catabolic process2.56E-02
175GO:0009636: response to toxic substance2.64E-02
176GO:0019344: cysteine biosynthetic process2.76E-02
177GO:0006406: mRNA export from nucleus2.76E-02
178GO:0008299: isoprenoid biosynthetic process2.96E-02
179GO:0010073: meristem maintenance2.96E-02
180GO:0061077: chaperone-mediated protein folding3.16E-02
181GO:0031408: oxylipin biosynthetic process3.16E-02
182GO:0006306: DNA methylation3.16E-02
183GO:0048511: rhythmic process3.16E-02
184GO:0098542: defense response to other organism3.16E-02
185GO:0006364: rRNA processing3.17E-02
186GO:0016226: iron-sulfur cluster assembly3.38E-02
187GO:0010017: red or far-red light signaling pathway3.38E-02
188GO:0030433: ubiquitin-dependent ERAD pathway3.38E-02
189GO:0080092: regulation of pollen tube growth3.38E-02
190GO:0042254: ribosome biogenesis3.53E-02
191GO:0010227: floral organ abscission3.59E-02
192GO:0043086: negative regulation of catalytic activity3.75E-02
193GO:0006817: phosphate ion transport3.81E-02
194GO:0009306: protein secretion3.81E-02
195GO:0019722: calcium-mediated signaling3.81E-02
196GO:0009561: megagametogenesis3.81E-02
197GO:0006508: proteolysis4.07E-02
198GO:0006606: protein import into nucleus4.27E-02
199GO:0006662: glycerol ether metabolic process4.50E-02
200GO:0010182: sugar mediated signaling pathway4.50E-02
201GO:0009741: response to brassinosteroid4.50E-02
202GO:0006396: RNA processing4.63E-02
203GO:0009646: response to absence of light4.73E-02
204GO:0015986: ATP synthesis coupled proton transport4.73E-02
205GO:0007018: microtubule-based movement4.73E-02
206GO:0010183: pollen tube guidance4.97E-02
207GO:0008654: phospholipid biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
5GO:0045550: geranylgeranyl reductase activity0.00E+00
6GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
7GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
8GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
9GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
10GO:0008465: glycerate dehydrogenase activity0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
14GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
15GO:0036033: mediator complex binding0.00E+00
16GO:0019843: rRNA binding7.92E-08
17GO:0031072: heat shock protein binding1.72E-07
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.71E-06
19GO:0018708: thiol S-methyltransferase activity1.11E-05
20GO:0016491: oxidoreductase activity7.89E-05
21GO:0016851: magnesium chelatase activity8.09E-05
22GO:0048038: quinone binding1.19E-04
23GO:0009011: starch synthase activity1.40E-04
24GO:0016987: sigma factor activity1.40E-04
25GO:0001053: plastid sigma factor activity1.40E-04
26GO:0008266: poly(U) RNA binding2.03E-04
27GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.03E-04
28GO:0051082: unfolded protein binding4.10E-04
29GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity5.03E-04
30GO:0030794: (S)-coclaurine-N-methyltransferase activity5.03E-04
31GO:0005227: calcium activated cation channel activity5.03E-04
32GO:0016776: phosphotransferase activity, phosphate group as acceptor5.03E-04
33GO:0080132: fatty acid alpha-hydroxylase activity5.03E-04
34GO:0008746: NAD(P)+ transhydrogenase activity5.03E-04
35GO:0004325: ferrochelatase activity5.03E-04
36GO:0042586: peptide deformylase activity5.03E-04
37GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity5.03E-04
38GO:0035671: enone reductase activity5.03E-04
39GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity5.03E-04
40GO:0051287: NAD binding1.02E-03
41GO:0004617: phosphoglycerate dehydrogenase activity1.08E-03
42GO:0004047: aminomethyltransferase activity1.08E-03
43GO:0052832: inositol monophosphate 3-phosphatase activity1.08E-03
44GO:0033201: alpha-1,4-glucan synthase activity1.08E-03
45GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.08E-03
46GO:0016630: protochlorophyllide reductase activity1.08E-03
47GO:0019156: isoamylase activity1.08E-03
48GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.08E-03
49GO:0008728: GTP diphosphokinase activity1.08E-03
50GO:0008934: inositol monophosphate 1-phosphatase activity1.08E-03
51GO:0052833: inositol monophosphate 4-phosphatase activity1.08E-03
52GO:0005464: UDP-xylose transmembrane transporter activity1.08E-03
53GO:0050017: L-3-cyanoalanine synthase activity1.08E-03
54GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity1.08E-03
55GO:0047746: chlorophyllase activity1.08E-03
56GO:0042389: omega-3 fatty acid desaturase activity1.08E-03
57GO:0010297: heteropolysaccharide binding1.08E-03
58GO:0009977: proton motive force dependent protein transmembrane transporter activity1.08E-03
59GO:0042802: identical protein binding1.66E-03
60GO:0016168: chlorophyll binding1.76E-03
61GO:0010277: chlorophyllide a oxygenase [overall] activity1.77E-03
62GO:0005504: fatty acid binding1.77E-03
63GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.77E-03
64GO:0004373: glycogen (starch) synthase activity1.77E-03
65GO:0050734: hydroxycinnamoyltransferase activity1.77E-03
66GO:0016992: lipoate synthase activity1.77E-03
67GO:0004751: ribose-5-phosphate isomerase activity1.77E-03
68GO:0030267: glyoxylate reductase (NADP) activity1.77E-03
69GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.77E-03
70GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.77E-03
71GO:0070402: NADPH binding1.77E-03
72GO:0008864: formyltetrahydrofolate deformylase activity1.77E-03
73GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.77E-03
74GO:0004565: beta-galactosidase activity1.95E-03
75GO:0008168: methyltransferase activity2.20E-03
76GO:0048027: mRNA 5'-UTR binding2.57E-03
77GO:0009882: blue light photoreceptor activity2.57E-03
78GO:0043023: ribosomal large subunit binding2.57E-03
79GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.57E-03
80GO:0031409: pigment binding2.75E-03
81GO:0045430: chalcone isomerase activity3.46E-03
82GO:0043495: protein anchor3.46E-03
83GO:0004185: serine-type carboxypeptidase activity4.32E-03
84GO:0003959: NADPH dehydrogenase activity4.44E-03
85GO:0003727: single-stranded RNA binding4.82E-03
86GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.26E-03
87GO:0004332: fructose-bisphosphate aldolase activity5.50E-03
88GO:0004556: alpha-amylase activity5.50E-03
89GO:0004130: cytochrome-c peroxidase activity5.50E-03
90GO:0035673: oligopeptide transmembrane transporter activity5.50E-03
91GO:0016615: malate dehydrogenase activity5.50E-03
92GO:0042578: phosphoric ester hydrolase activity5.50E-03
93GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.50E-03
94GO:0004124: cysteine synthase activity6.63E-03
95GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.63E-03
96GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity6.63E-03
97GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.63E-03
98GO:0030060: L-malate dehydrogenase activity6.63E-03
99GO:0005261: cation channel activity6.63E-03
100GO:0003886: DNA (cytosine-5-)-methyltransferase activity6.63E-03
101GO:0019899: enzyme binding7.85E-03
102GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups8.17E-03
103GO:0005506: iron ion binding8.46E-03
104GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.05E-02
105GO:0008135: translation factor activity, RNA binding1.05E-02
106GO:0005515: protein binding1.18E-02
107GO:0071949: FAD binding1.19E-02
108GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.34E-02
109GO:0030234: enzyme regulator activity1.50E-02
110GO:0005525: GTP binding1.58E-02
111GO:0005089: Rho guanyl-nucleotide exchange factor activity1.66E-02
112GO:0003746: translation elongation factor activity1.82E-02
113GO:0015198: oligopeptide transporter activity1.83E-02
114GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.89E-02
115GO:0005315: inorganic phosphate transmembrane transporter activity2.01E-02
116GO:0000155: phosphorelay sensor kinase activity2.01E-02
117GO:0005509: calcium ion binding2.02E-02
118GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.18E-02
119GO:0004364: glutathione transferase activity2.26E-02
120GO:0035091: phosphatidylinositol binding2.55E-02
121GO:0051537: 2 iron, 2 sulfur cluster binding2.55E-02
122GO:0005528: FK506 binding2.76E-02
123GO:0051536: iron-sulfur cluster binding2.76E-02
124GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.17E-02
125GO:0003690: double-stranded DNA binding3.28E-02
126GO:0004601: peroxidase activity3.45E-02
127GO:0016788: hydrolase activity, acting on ester bonds3.53E-02
128GO:0022891: substrate-specific transmembrane transporter activity3.59E-02
129GO:0003735: structural constituent of ribosome3.66E-02
130GO:0047134: protein-disulfide reductase activity4.04E-02
131GO:0016787: hydrolase activity4.24E-02
132GO:0016887: ATPase activity4.36E-02
133GO:0008080: N-acetyltransferase activity4.50E-02
134GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.50E-02
135GO:0004791: thioredoxin-disulfide reductase activity4.73E-02
136GO:0016853: isomerase activity4.73E-02
137GO:0050662: coenzyme binding4.73E-02
138GO:0010181: FMN binding4.73E-02
139GO:0003729: mRNA binding4.86E-02
140GO:0004872: receptor activity4.97E-02
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Gene type



Gene DE type