GO Enrichment Analysis of Co-expressed Genes with
AT1G49890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002949: tRNA threonylcarbamoyladenosine modification | 0.00E+00 |
| 2 | GO:0009606: tropism | 0.00E+00 |
| 3 | GO:0009451: RNA modification | 8.83E-06 |
| 4 | GO:0034757: negative regulation of iron ion transport | 9.88E-05 |
| 5 | GO:1903866: palisade mesophyll development | 9.88E-05 |
| 6 | GO:1900865: chloroplast RNA modification | 1.06E-04 |
| 7 | GO:0009875: pollen-pistil interaction | 2.32E-04 |
| 8 | GO:0010254: nectary development | 2.32E-04 |
| 9 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.32E-04 |
| 10 | GO:0010434: bract formation | 2.32E-04 |
| 11 | GO:0048439: flower morphogenesis | 2.32E-04 |
| 12 | GO:0010271: regulation of chlorophyll catabolic process | 2.32E-04 |
| 13 | GO:0010541: acropetal auxin transport | 2.32E-04 |
| 14 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.32E-04 |
| 15 | GO:0080009: mRNA methylation | 2.32E-04 |
| 16 | GO:0030029: actin filament-based process | 3.86E-04 |
| 17 | GO:0009954: proximal/distal pattern formation | 3.86E-04 |
| 18 | GO:0009432: SOS response | 3.86E-04 |
| 19 | GO:0080117: secondary growth | 3.86E-04 |
| 20 | GO:0090391: granum assembly | 3.86E-04 |
| 21 | GO:0000730: DNA recombinase assembly | 5.54E-04 |
| 22 | GO:0010371: regulation of gibberellin biosynthetic process | 5.54E-04 |
| 23 | GO:1902476: chloride transmembrane transport | 5.54E-04 |
| 24 | GO:0051513: regulation of monopolar cell growth | 5.54E-04 |
| 25 | GO:0010239: chloroplast mRNA processing | 5.54E-04 |
| 26 | GO:1902290: positive regulation of defense response to oomycetes | 5.54E-04 |
| 27 | GO:1900864: mitochondrial RNA modification | 7.37E-04 |
| 28 | GO:0048497: maintenance of floral organ identity | 9.32E-04 |
| 29 | GO:0009734: auxin-activated signaling pathway | 1.10E-03 |
| 30 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.14E-03 |
| 31 | GO:0042549: photosystem II stabilization | 1.14E-03 |
| 32 | GO:0009959: negative gravitropism | 1.14E-03 |
| 33 | GO:0016554: cytidine to uridine editing | 1.14E-03 |
| 34 | GO:0010315: auxin efflux | 1.14E-03 |
| 35 | GO:0009913: epidermal cell differentiation | 1.14E-03 |
| 36 | GO:0048831: regulation of shoot system development | 1.14E-03 |
| 37 | GO:0009955: adaxial/abaxial pattern specification | 1.36E-03 |
| 38 | GO:1901259: chloroplast rRNA processing | 1.36E-03 |
| 39 | GO:0009082: branched-chain amino acid biosynthetic process | 1.36E-03 |
| 40 | GO:0048509: regulation of meristem development | 1.36E-03 |
| 41 | GO:0009099: valine biosynthetic process | 1.36E-03 |
| 42 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 1.59E-03 |
| 43 | GO:0006955: immune response | 1.59E-03 |
| 44 | GO:0042148: strand invasion | 1.59E-03 |
| 45 | GO:0006821: chloride transport | 1.59E-03 |
| 46 | GO:0009658: chloroplast organization | 1.77E-03 |
| 47 | GO:0030162: regulation of proteolysis | 1.84E-03 |
| 48 | GO:0042255: ribosome assembly | 1.84E-03 |
| 49 | GO:0006353: DNA-templated transcription, termination | 1.84E-03 |
| 50 | GO:0048766: root hair initiation | 1.84E-03 |
| 51 | GO:0001522: pseudouridine synthesis | 1.84E-03 |
| 52 | GO:0010212: response to ionizing radiation | 2.10E-03 |
| 53 | GO:0009097: isoleucine biosynthetic process | 2.10E-03 |
| 54 | GO:0007389: pattern specification process | 2.10E-03 |
| 55 | GO:0008283: cell proliferation | 2.27E-03 |
| 56 | GO:0000373: Group II intron splicing | 2.37E-03 |
| 57 | GO:1900426: positive regulation of defense response to bacterium | 2.65E-03 |
| 58 | GO:0006349: regulation of gene expression by genetic imprinting | 2.65E-03 |
| 59 | GO:0016571: histone methylation | 2.65E-03 |
| 60 | GO:0016573: histone acetylation | 2.65E-03 |
| 61 | GO:0010048: vernalization response | 2.95E-03 |
| 62 | GO:0048829: root cap development | 2.95E-03 |
| 63 | GO:0009736: cytokinin-activated signaling pathway | 3.04E-03 |
| 64 | GO:0006312: mitotic recombination | 3.57E-03 |
| 65 | GO:0010582: floral meristem determinacy | 3.57E-03 |
| 66 | GO:0009691: cytokinin biosynthetic process | 3.89E-03 |
| 67 | GO:0048364: root development | 4.01E-03 |
| 68 | GO:0009553: embryo sac development | 4.18E-03 |
| 69 | GO:0010540: basipetal auxin transport | 4.22E-03 |
| 70 | GO:0009266: response to temperature stimulus | 4.22E-03 |
| 71 | GO:0010020: chloroplast fission | 4.22E-03 |
| 72 | GO:0006338: chromatin remodeling | 5.28E-03 |
| 73 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.28E-03 |
| 74 | GO:0009845: seed germination | 5.83E-03 |
| 75 | GO:0010431: seed maturation | 6.03E-03 |
| 76 | GO:0003333: amino acid transmembrane transport | 6.03E-03 |
| 77 | GO:0016998: cell wall macromolecule catabolic process | 6.03E-03 |
| 78 | GO:0010227: floral organ abscission | 6.82E-03 |
| 79 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.82E-03 |
| 80 | GO:0071215: cellular response to abscisic acid stimulus | 6.82E-03 |
| 81 | GO:0010082: regulation of root meristem growth | 6.82E-03 |
| 82 | GO:0070417: cellular response to cold | 7.64E-03 |
| 83 | GO:0009416: response to light stimulus | 7.86E-03 |
| 84 | GO:0008033: tRNA processing | 8.07E-03 |
| 85 | GO:0010087: phloem or xylem histogenesis | 8.07E-03 |
| 86 | GO:0009741: response to brassinosteroid | 8.50E-03 |
| 87 | GO:0009960: endosperm development | 8.50E-03 |
| 88 | GO:0009958: positive gravitropism | 8.50E-03 |
| 89 | GO:0008380: RNA splicing | 8.86E-03 |
| 90 | GO:0006814: sodium ion transport | 8.94E-03 |
| 91 | GO:0009646: response to absence of light | 8.94E-03 |
| 92 | GO:0007018: microtubule-based movement | 8.94E-03 |
| 93 | GO:0009851: auxin biosynthetic process | 9.39E-03 |
| 94 | GO:0010183: pollen tube guidance | 9.39E-03 |
| 95 | GO:0048825: cotyledon development | 9.39E-03 |
| 96 | GO:0080156: mitochondrial mRNA modification | 9.85E-03 |
| 97 | GO:0032502: developmental process | 1.03E-02 |
| 98 | GO:0009630: gravitropism | 1.03E-02 |
| 99 | GO:0010583: response to cyclopentenone | 1.03E-02 |
| 100 | GO:0010252: auxin homeostasis | 1.13E-02 |
| 101 | GO:0009639: response to red or far red light | 1.13E-02 |
| 102 | GO:0009828: plant-type cell wall loosening | 1.13E-02 |
| 103 | GO:0006310: DNA recombination | 1.13E-02 |
| 104 | GO:0006970: response to osmotic stress | 1.24E-02 |
| 105 | GO:0010027: thylakoid membrane organization | 1.28E-02 |
| 106 | GO:0010029: regulation of seed germination | 1.33E-02 |
| 107 | GO:0006974: cellular response to DNA damage stimulus | 1.38E-02 |
| 108 | GO:0048767: root hair elongation | 1.60E-02 |
| 109 | GO:0000160: phosphorelay signal transduction system | 1.60E-02 |
| 110 | GO:0009793: embryo development ending in seed dormancy | 1.62E-02 |
| 111 | GO:0009407: toxin catabolic process | 1.65E-02 |
| 112 | GO:0009910: negative regulation of flower development | 1.71E-02 |
| 113 | GO:0006865: amino acid transport | 1.76E-02 |
| 114 | GO:0009926: auxin polar transport | 2.18E-02 |
| 115 | GO:0009636: response to toxic substance | 2.37E-02 |
| 116 | GO:0031347: regulation of defense response | 2.50E-02 |
| 117 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.50E-02 |
| 118 | GO:0009664: plant-type cell wall organization | 2.57E-02 |
| 119 | GO:0009651: response to salt stress | 2.81E-02 |
| 120 | GO:0009909: regulation of flower development | 2.90E-02 |
| 121 | GO:0006096: glycolytic process | 3.04E-02 |
| 122 | GO:0048367: shoot system development | 3.11E-02 |
| 123 | GO:0048316: seed development | 3.11E-02 |
| 124 | GO:0005975: carbohydrate metabolic process | 3.24E-02 |
| 125 | GO:0016569: covalent chromatin modification | 3.32E-02 |
| 126 | GO:0009742: brassinosteroid mediated signaling pathway | 3.62E-02 |
| 127 | GO:0009058: biosynthetic process | 4.22E-02 |
| 128 | GO:0007275: multicellular organism development | 4.46E-02 |
| 129 | GO:0009790: embryo development | 4.54E-02 |
| 130 | GO:0055085: transmembrane transport | 4.74E-02 |
| 131 | GO:0040008: regulation of growth | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061711: N(6)-L-threonylcarbamoyladenine synthase | 0.00E+00 |
| 2 | GO:0004519: endonuclease activity | 1.04E-05 |
| 3 | GO:0004016: adenylate cyclase activity | 9.88E-05 |
| 4 | GO:0042834: peptidoglycan binding | 9.88E-05 |
| 5 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 9.88E-05 |
| 6 | GO:0052381: tRNA dimethylallyltransferase activity | 9.88E-05 |
| 7 | GO:0004160: dihydroxy-acid dehydratase activity | 9.88E-05 |
| 8 | GO:0003723: RNA binding | 1.25E-04 |
| 9 | GO:0009982: pseudouridine synthase activity | 1.98E-04 |
| 10 | GO:0016868: intramolecular transferase activity, phosphotransferases | 2.32E-04 |
| 11 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 2.32E-04 |
| 12 | GO:0009884: cytokinin receptor activity | 2.32E-04 |
| 13 | GO:0017150: tRNA dihydrouridine synthase activity | 3.86E-04 |
| 14 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 3.86E-04 |
| 15 | GO:0005034: osmosensor activity | 3.86E-04 |
| 16 | GO:0003727: single-stranded RNA binding | 4.98E-04 |
| 17 | GO:0008508: bile acid:sodium symporter activity | 5.54E-04 |
| 18 | GO:0016836: hydro-lyase activity | 7.37E-04 |
| 19 | GO:0010328: auxin influx transmembrane transporter activity | 7.37E-04 |
| 20 | GO:0005253: anion channel activity | 7.37E-04 |
| 21 | GO:0005247: voltage-gated chloride channel activity | 1.14E-03 |
| 22 | GO:0019900: kinase binding | 1.36E-03 |
| 23 | GO:0004222: metalloendopeptidase activity | 1.54E-03 |
| 24 | GO:0000150: recombinase activity | 1.59E-03 |
| 25 | GO:0003697: single-stranded DNA binding | 1.77E-03 |
| 26 | GO:0004520: endodeoxyribonuclease activity | 1.84E-03 |
| 27 | GO:0000400: four-way junction DNA binding | 1.84E-03 |
| 28 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.01E-03 |
| 29 | GO:0009672: auxin:proton symporter activity | 2.65E-03 |
| 30 | GO:0004673: protein histidine kinase activity | 2.95E-03 |
| 31 | GO:0003690: double-stranded DNA binding | 3.14E-03 |
| 32 | GO:0008559: xenobiotic-transporting ATPase activity | 3.25E-03 |
| 33 | GO:0000155: phosphorelay sensor kinase activity | 3.89E-03 |
| 34 | GO:0010329: auxin efflux transmembrane transporter activity | 3.89E-03 |
| 35 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 4.22E-03 |
| 36 | GO:0005215: transporter activity | 5.30E-03 |
| 37 | GO:0019843: rRNA binding | 5.38E-03 |
| 38 | GO:0043424: protein histidine kinase binding | 5.65E-03 |
| 39 | GO:0008094: DNA-dependent ATPase activity | 6.03E-03 |
| 40 | GO:0004176: ATP-dependent peptidase activity | 6.03E-03 |
| 41 | GO:0018024: histone-lysine N-methyltransferase activity | 7.64E-03 |
| 42 | GO:0003713: transcription coactivator activity | 8.50E-03 |
| 43 | GO:0019901: protein kinase binding | 9.39E-03 |
| 44 | GO:0008237: metallopeptidase activity | 1.18E-02 |
| 45 | GO:0005200: structural constituent of cytoskeleton | 1.18E-02 |
| 46 | GO:0008375: acetylglucosaminyltransferase activity | 1.38E-02 |
| 47 | GO:0004364: glutathione transferase activity | 2.12E-02 |
| 48 | GO:0015293: symporter activity | 2.37E-02 |
| 49 | GO:0003777: microtubule motor activity | 2.90E-02 |
| 50 | GO:0015171: amino acid transmembrane transporter activity | 2.90E-02 |
| 51 | GO:0031625: ubiquitin protein ligase binding | 2.90E-02 |
| 52 | GO:0004672: protein kinase activity | 3.11E-02 |
| 53 | GO:0004650: polygalacturonase activity | 3.25E-02 |
| 54 | GO:0016887: ATPase activity | 3.27E-02 |
| 55 | GO:0016874: ligase activity | 3.32E-02 |
| 56 | GO:0004386: helicase activity | 3.69E-02 |
| 57 | GO:0003735: structural constituent of ribosome | 4.52E-02 |
| 58 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 4.86E-02 |