co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G47580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070979: protein K11-linked ubiquitination	0.00E+00
2	GO:0043488: regulation of mRNA stability	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0009157: deoxyribonucleoside monophosphate biosynthetic process	0.00E+00
6	GO:0045176: apical protein localization	0.00E+00
7	GO:0007037: vacuolar phosphate transport	0.00E+00
8	GO:0031129: inductive cell-cell signaling	0.00E+00
9	GO:2001294: malonyl-CoA catabolic process	0.00E+00
10	GO:0009902: chloroplast relocation	8.61E-05
11	GO:0010158: abaxial cell fate specification	1.34E-04
12	GO:1902183: regulation of shoot apical meristem development	1.34E-04
13	GO:0006177: GMP biosynthetic process	3.75E-04
14	GO:0010450: inflorescence meristem growth	3.75E-04
15	GO:0051171: regulation of nitrogen compound metabolic process	3.75E-04
16	GO:1902265: abscisic acid homeostasis	3.75E-04
17	GO:0010482: regulation of epidermal cell division	3.75E-04
18	GO:0071028: nuclear mRNA surveillance	3.75E-04
19	GO:0006264: mitochondrial DNA replication	3.75E-04
20	GO:0033259: plastid DNA replication	3.75E-04
21	GO:0045488: pectin metabolic process	3.75E-04
22	GO:0007155: cell adhesion	4.22E-04
23	GO:2000024: regulation of leaf development	6.19E-04
24	GO:0015804: neutral amino acid transport	8.15E-04
25	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	8.15E-04
26	GO:0034475: U4 snRNA 3'-end processing	8.15E-04
27	GO:2000039: regulation of trichome morphogenesis	8.15E-04
28	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	8.15E-04
29	GO:0010115: regulation of abscisic acid biosynthetic process	8.15E-04
30	GO:0007154: cell communication	8.15E-04
31	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	8.15E-04
32	GO:1900033: negative regulation of trichome patterning	8.15E-04
33	GO:0042814: monopolar cell growth	8.15E-04
34	GO:0031125: rRNA 3'-end processing	8.15E-04
35	GO:0016075: rRNA catabolic process	1.32E-03
36	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.32E-03
37	GO:0031022: nuclear migration along microfilament	1.32E-03
38	GO:0051127: positive regulation of actin nucleation	1.32E-03
39	GO:0045604: regulation of epidermal cell differentiation	1.32E-03
40	GO:0006753: nucleoside phosphate metabolic process	1.32E-03
41	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.32E-03
42	GO:0043693: monoterpene biosynthetic process	1.32E-03
43	GO:0045493: xylan catabolic process	1.32E-03
44	GO:0045165: cell fate commitment	1.32E-03
45	GO:0030071: regulation of mitotic metaphase/anaphase transition	1.91E-03
46	GO:0051639: actin filament network formation	1.91E-03
47	GO:0006164: purine nucleotide biosynthetic process	1.91E-03
48	GO:0010255: glucose mediated signaling pathway	1.91E-03
49	GO:0048530: fruit morphogenesis	1.91E-03
50	GO:0006168: adenine salvage	1.91E-03
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.91E-03
52	GO:0006166: purine ribonucleoside salvage	1.91E-03
53	GO:0009944: polarity specification of adaxial/abaxial axis	1.97E-03
54	GO:0010187: negative regulation of seed germination	1.97E-03
55	GO:0051764: actin crosslink formation	2.56E-03
56	GO:0051322: anaphase	2.56E-03
57	GO:0015846: polyamine transport	2.56E-03
58	GO:0009165: nucleotide biosynthetic process	2.56E-03
59	GO:0048629: trichome patterning	2.56E-03
60	GO:0032876: negative regulation of DNA endoreduplication	3.28E-03
61	GO:0006544: glycine metabolic process	3.28E-03
62	GO:0045038: protein import into chloroplast thylakoid membrane	3.28E-03
63	GO:0044209: AMP salvage	3.28E-03
64	GO:0009585: red, far-red light phototransduction	3.60E-03
65	GO:0010087: phloem or xylem histogenesis	3.64E-03
66	GO:0010154: fruit development	3.92E-03
67	GO:0010182: sugar mediated signaling pathway	3.92E-03
68	GO:0009959: negative gravitropism	4.05E-03
69	GO:0016554: cytidine to uridine editing	4.05E-03
70	GO:0006139: nucleobase-containing compound metabolic process	4.05E-03
71	GO:0000741: karyogamy	4.05E-03
72	GO:0009117: nucleotide metabolic process	4.05E-03
73	GO:0006561: proline biosynthetic process	4.05E-03
74	GO:0006563: L-serine metabolic process	4.05E-03
75	GO:0048827: phyllome development	4.05E-03
76	GO:0048825: cotyledon development	4.53E-03
77	GO:0009658: chloroplast organization	4.72E-03
78	GO:0042372: phylloquinone biosynthetic process	4.88E-03
79	GO:0009082: branched-chain amino acid biosynthetic process	4.88E-03
80	GO:2000033: regulation of seed dormancy process	4.88E-03
81	GO:0048280: vesicle fusion with Golgi apparatus	4.88E-03
82	GO:0009099: valine biosynthetic process	4.88E-03
83	GO:0009903: chloroplast avoidance movement	4.88E-03
84	GO:0048444: floral organ morphogenesis	4.88E-03
85	GO:0080086: stamen filament development	4.88E-03
86	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	4.88E-03
87	GO:0010583: response to cyclopentenone	5.18E-03
88	GO:0009740: gibberellic acid mediated signaling pathway	5.24E-03
89	GO:0009395: phospholipid catabolic process	5.77E-03
90	GO:0010196: nonphotochemical quenching	5.77E-03
91	GO:0015937: coenzyme A biosynthetic process	5.77E-03
92	GO:0050829: defense response to Gram-negative bacterium	5.77E-03
93	GO:0010161: red light signaling pathway	5.77E-03
94	GO:0009787: regulation of abscisic acid-activated signaling pathway	6.70E-03
95	GO:0033386: geranylgeranyl diphosphate biosynthetic process	6.70E-03
96	GO:0042255: ribosome assembly	6.70E-03
97	GO:0046620: regulation of organ growth	6.70E-03
98	GO:0006353: DNA-templated transcription, termination	6.70E-03
99	GO:0010078: maintenance of root meristem identity	6.70E-03
100	GO:0009704: de-etiolation	6.70E-03
101	GO:0032875: regulation of DNA endoreduplication	6.70E-03
102	GO:0010029: regulation of seed germination	7.42E-03
103	GO:0010099: regulation of photomorphogenesis	7.69E-03
104	GO:0006002: fructose 6-phosphate metabolic process	7.69E-03
105	GO:0009097: isoleucine biosynthetic process	7.69E-03
106	GO:0010100: negative regulation of photomorphogenesis	7.69E-03
107	GO:0006997: nucleus organization	7.69E-03
108	GO:0043562: cellular response to nitrogen levels	7.69E-03
109	GO:0010093: specification of floral organ identity	7.69E-03
110	GO:0009627: systemic acquired resistance	7.84E-03
111	GO:0045337: farnesyl diphosphate biosynthetic process	8.73E-03
112	GO:0033384: geranyl diphosphate biosynthetic process	8.73E-03
113	GO:0006783: heme biosynthetic process	8.73E-03
114	GO:0000373: Group II intron splicing	8.73E-03
115	GO:0006189: 'de novo' IMP biosynthetic process	8.73E-03
116	GO:0009638: phototropism	9.82E-03
117	GO:0009098: leucine biosynthetic process	9.82E-03
118	GO:0010018: far-red light signaling pathway	9.82E-03
119	GO:0042761: very long-chain fatty acid biosynthetic process	9.82E-03
120	GO:1900865: chloroplast RNA modification	9.82E-03
121	GO:0048354: mucilage biosynthetic process involved in seed coat development	9.82E-03
122	GO:0010380: regulation of chlorophyll biosynthetic process	9.82E-03
123	GO:0040008: regulation of growth	1.07E-02
124	GO:0010192: mucilage biosynthetic process	1.10E-02
125	GO:0010162: seed dormancy process	1.10E-02
126	GO:0006896: Golgi to vacuole transport	1.10E-02
127	GO:0009299: mRNA transcription	1.10E-02
128	GO:0006535: cysteine biosynthetic process from serine	1.10E-02
129	GO:0009688: abscisic acid biosynthetic process	1.10E-02
130	GO:0045036: protein targeting to chloroplast	1.10E-02
131	GO:0009773: photosynthetic electron transport in photosystem I	1.21E-02
132	GO:0006415: translational termination	1.21E-02
133	GO:1903507: negative regulation of nucleic acid-templated transcription	1.21E-02
134	GO:0009750: response to fructose	1.21E-02
135	GO:0009684: indoleacetic acid biosynthetic process	1.21E-02
136	GO:0009733: response to auxin	1.25E-02
137	GO:0010588: cotyledon vascular tissue pattern formation	1.46E-02
138	GO:0030048: actin filament-based movement	1.46E-02
139	GO:0010628: positive regulation of gene expression	1.46E-02
140	GO:0010229: inflorescence development	1.46E-02
141	GO:0030036: actin cytoskeleton organization	1.46E-02
142	GO:0009725: response to hormone	1.46E-02
143	GO:0048467: gynoecium development	1.59E-02
144	GO:0006541: glutamine metabolic process	1.59E-02
145	GO:0009933: meristem structural organization	1.59E-02
146	GO:0010540: basipetal auxin transport	1.59E-02
147	GO:0009825: multidimensional cell growth	1.73E-02
148	GO:0090351: seedling development	1.73E-02
149	GO:0010030: positive regulation of seed germination	1.73E-02
150	GO:0000162: tryptophan biosynthetic process	1.87E-02
151	GO:0010025: wax biosynthetic process	1.87E-02
152	GO:0042753: positive regulation of circadian rhythm	1.87E-02
153	GO:0009833: plant-type primary cell wall biogenesis	1.87E-02
154	GO:0019344: cysteine biosynthetic process	2.01E-02
155	GO:0007010: cytoskeleton organization	2.01E-02
156	GO:0051017: actin filament bundle assembly	2.01E-02
157	GO:0005992: trehalose biosynthetic process	2.01E-02
158	GO:0008299: isoprenoid biosynthetic process	2.15E-02
159	GO:0003333: amino acid transmembrane transport	2.30E-02
160	GO:0035428: hexose transmembrane transport	2.46E-02
161	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.46E-02
162	GO:0048367: shoot system development	2.48E-02
163	GO:0009686: gibberellin biosynthetic process	2.62E-02
164	GO:0010091: trichome branching	2.78E-02
165	GO:0010214: seed coat development	2.78E-02
166	GO:0071555: cell wall organization	2.87E-02
167	GO:0016117: carotenoid biosynthetic process	2.94E-02
168	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.94E-02
169	GO:0042147: retrograde transport, endosome to Golgi	2.94E-02
170	GO:0042631: cellular response to water deprivation	3.11E-02
171	GO:0000226: microtubule cytoskeleton organization	3.11E-02
172	GO:0000271: polysaccharide biosynthetic process	3.11E-02
173	GO:0080022: primary root development	3.11E-02
174	GO:0008033: tRNA processing	3.11E-02
175	GO:0008360: regulation of cell shape	3.28E-02
176	GO:0009958: positive gravitropism	3.28E-02
177	GO:0045489: pectin biosynthetic process	3.28E-02
178	GO:0010197: polar nucleus fusion	3.28E-02
179	GO:0046323: glucose import	3.28E-02
180	GO:0007018: microtubule-based movement	3.45E-02
181	GO:0006623: protein targeting to vacuole	3.63E-02
182	GO:0009851: auxin biosynthetic process	3.63E-02
183	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.81E-02
184	GO:0006891: intra-Golgi vesicle-mediated transport	3.81E-02
185	GO:0016032: viral process	3.99E-02
186	GO:0032502: developmental process	3.99E-02
187	GO:0016042: lipid catabolic process	4.06E-02
188	GO:0009639: response to red or far red light	4.36E-02
189	GO:0071805: potassium ion transmembrane transport	4.55E-02
190	GO:0000910: cytokinesis	4.75E-02
191	GO:0016126: sterol biosynthetic process	4.94E-02
192	GO:0009911: positive regulation of flower development	4.94E-02
193	GO:0007623: circadian rhythm	4.98E-02
194	GO:0045490: pectin catabolic process	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0019136: deoxynucleoside kinase activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0019808: polyamine binding	0.00E+00
5	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:1990534: thermospermine oxidase activity	0.00E+00
9	GO:0050139: nicotinate-N-glucosyltransferase activity	3.75E-04
10	GO:0010945: CoA pyrophosphatase activity	3.75E-04
11	GO:0010313: phytochrome binding	3.75E-04
12	GO:0003938: IMP dehydrogenase activity	8.15E-04
13	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.15E-04
14	GO:0015929: hexosaminidase activity	8.15E-04
15	GO:0004563: beta-N-acetylhexosaminidase activity	8.15E-04
16	GO:0015172: acidic amino acid transmembrane transporter activity	8.15E-04
17	GO:0050017: L-3-cyanoalanine synthase activity	8.15E-04
18	GO:0043425: bHLH transcription factor binding	8.15E-04
19	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.15E-04
20	GO:0016788: hydrolase activity, acting on ester bonds	1.12E-03
21	GO:0004049: anthranilate synthase activity	1.32E-03
22	GO:0000254: C-4 methylsterol oxidase activity	1.91E-03
23	GO:0015175: neutral amino acid transmembrane transporter activity	1.91E-03
24	GO:0035529: NADH pyrophosphatase activity	1.91E-03
25	GO:0003999: adenine phosphoribosyltransferase activity	1.91E-03
26	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.91E-03
27	GO:0052656: L-isoleucine transaminase activity	1.91E-03
28	GO:0052654: L-leucine transaminase activity	1.91E-03
29	GO:0052655: L-valine transaminase activity	1.91E-03
30	GO:0008409: 5'-3' exonuclease activity	2.56E-03
31	GO:0080032: methyl jasmonate esterase activity	2.56E-03
32	GO:0004084: branched-chain-amino-acid transaminase activity	2.56E-03
33	GO:0009044: xylan 1,4-beta-xylosidase activity	2.56E-03
34	GO:0046556: alpha-L-arabinofuranosidase activity	2.56E-03
35	GO:0008017: microtubule binding	2.60E-03
36	GO:0003727: single-stranded RNA binding	3.11E-03
37	GO:0016846: carbon-sulfur lyase activity	3.28E-03
38	GO:0004372: glycine hydroxymethyltransferase activity	3.28E-03
39	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.28E-03
40	GO:0000210: NAD+ diphosphatase activity	4.05E-03
41	GO:0016208: AMP binding	4.05E-03
42	GO:0042578: phosphoric ester hydrolase activity	4.05E-03
43	GO:0016462: pyrophosphatase activity	4.05E-03
44	GO:0004124: cysteine synthase activity	4.88E-03
45	GO:0003730: mRNA 3'-UTR binding	4.88E-03
46	GO:0003872: 6-phosphofructokinase activity	5.77E-03
47	GO:0004311: farnesyltranstransferase activity	6.70E-03
48	GO:0052689: carboxylic ester hydrolase activity	7.63E-03
49	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.79E-03
50	GO:0030247: polysaccharide binding	8.27E-03
51	GO:0004337: geranyltranstransferase activity	8.73E-03
52	GO:0003747: translation release factor activity	8.73E-03
53	GO:0005506: iron ion binding	9.72E-03
54	GO:0004805: trehalose-phosphatase activity	1.10E-02
55	GO:0003824: catalytic activity	1.20E-02
56	GO:0008794: arsenate reductase (glutaredoxin) activity	1.21E-02
57	GO:0004161: dimethylallyltranstransferase activity	1.21E-02
58	GO:0047372: acylglycerol lipase activity	1.21E-02
59	GO:0000175: 3'-5'-exoribonuclease activity	1.46E-02
60	GO:0003725: double-stranded RNA binding	1.46E-02
61	GO:0008081: phosphoric diester hydrolase activity	1.46E-02
62	GO:0004022: alcohol dehydrogenase (NAD) activity	1.46E-02
63	GO:0042802: identical protein binding	1.54E-02
64	GO:0019825: oxygen binding	1.58E-02
65	GO:0008131: primary amine oxidase activity	1.59E-02
66	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.59E-02
67	GO:0003887: DNA-directed DNA polymerase activity	1.87E-02
68	GO:0005528: FK506 binding	2.01E-02
69	GO:0003714: transcription corepressor activity	2.01E-02
70	GO:0015079: potassium ion transmembrane transporter activity	2.15E-02
71	GO:0003777: microtubule motor activity	2.25E-02
72	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.30E-02
73	GO:0008408: 3'-5' exonuclease activity	2.30E-02
74	GO:0020037: heme binding	2.40E-02
75	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.46E-02
76	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.48E-02
77	GO:0004497: monooxygenase activity	2.59E-02
78	GO:0030570: pectate lyase activity	2.62E-02
79	GO:0016760: cellulose synthase (UDP-forming) activity	2.62E-02
80	GO:0001085: RNA polymerase II transcription factor binding	3.28E-02
81	GO:0046872: metal ion binding	3.38E-02
82	GO:0004871: signal transducer activity	3.44E-02
83	GO:0005355: glucose transmembrane transporter activity	3.45E-02
84	GO:0010181: FMN binding	3.45E-02
85	GO:0019901: protein kinase binding	3.63E-02
86	GO:0016740: transferase activity	3.73E-02
87	GO:0000156: phosphorelay response regulator activity	4.17E-02
88	GO:0051015: actin filament binding	4.17E-02
89	GO:0016759: cellulose synthase activity	4.36E-02
90	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.65E-02