co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G45474

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0032544: plastid translation	7.23E-10
3	GO:0015979: photosynthesis	1.22E-08
4	GO:0009773: photosynthetic electron transport in photosystem I	5.18E-07
5	GO:0010207: photosystem II assembly	1.32E-06
6	GO:0009768: photosynthesis, light harvesting in photosystem I	3.56E-06
7	GO:0009735: response to cytokinin	3.98E-06
8	GO:0006412: translation	8.05E-06
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.72E-05
10	GO:0006810: transport	5.78E-05
11	GO:0015995: chlorophyll biosynthetic process	5.89E-05
12	GO:0018298: protein-chromophore linkage	7.16E-05
13	GO:0010189: vitamin E biosynthetic process	1.56E-04
14	GO:0009854: oxidative photosynthetic carbon pathway	1.56E-04
15	GO:0009645: response to low light intensity stimulus	2.04E-04
16	GO:0048564: photosystem I assembly	2.58E-04
17	GO:0032259: methylation	2.68E-04
18	GO:0043953: protein transport by the Tat complex	2.70E-04
19	GO:0065002: intracellular protein transmembrane transport	2.70E-04
20	GO:0080093: regulation of photorespiration	2.70E-04
21	GO:0031998: regulation of fatty acid beta-oxidation	2.70E-04
22	GO:0034337: RNA folding	2.70E-04
23	GO:0019252: starch biosynthetic process	2.90E-04
24	GO:0071482: cellular response to light stimulus	3.19E-04
25	GO:0009658: chloroplast organization	4.56E-04
26	GO:0042254: ribosome biogenesis	4.71E-04
27	GO:0010027: thylakoid membrane organization	5.15E-04
28	GO:0071457: cellular response to ozone	5.94E-04
29	GO:0006729: tetrahydrobiopterin biosynthetic process	5.94E-04
30	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.94E-04
31	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.94E-04
32	GO:0018119: peptidyl-cysteine S-nitrosylation	6.14E-04
33	GO:0006094: gluconeogenesis	7.96E-04
34	GO:0009767: photosynthetic electron transport chain	7.96E-04
35	GO:0005986: sucrose biosynthetic process	7.96E-04
36	GO:0010218: response to far red light	8.15E-04
37	GO:0019253: reductive pentose-phosphate cycle	8.95E-04
38	GO:0090391: granum assembly	9.62E-04
39	GO:0006518: peptide metabolic process	9.62E-04
40	GO:0044375: regulation of peroxisome size	9.62E-04
41	GO:0005977: glycogen metabolic process	9.62E-04
42	GO:0006000: fructose metabolic process	9.62E-04
43	GO:0009637: response to blue light	9.69E-04
44	GO:0042742: defense response to bacterium	1.13E-03
45	GO:0010114: response to red light	1.33E-03
46	GO:0006165: nucleoside diphosphate phosphorylation	1.38E-03
47	GO:0042989: sequestering of actin monomers	1.38E-03
48	GO:0006228: UTP biosynthetic process	1.38E-03
49	GO:1901332: negative regulation of lateral root development	1.38E-03
50	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.38E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.38E-03
52	GO:0071484: cellular response to light intensity	1.38E-03
53	GO:0006241: CTP biosynthetic process	1.38E-03
54	GO:0010021: amylopectin biosynthetic process	1.84E-03
55	GO:0015976: carbon utilization	1.84E-03
56	GO:0071486: cellular response to high light intensity	1.84E-03
57	GO:0009765: photosynthesis, light harvesting	1.84E-03
58	GO:0006183: GTP biosynthetic process	1.84E-03
59	GO:0045727: positive regulation of translation	1.84E-03
60	GO:0015994: chlorophyll metabolic process	1.84E-03
61	GO:0006536: glutamate metabolic process	1.84E-03
62	GO:0010600: regulation of auxin biosynthetic process	1.84E-03
63	GO:0006656: phosphatidylcholine biosynthetic process	2.35E-03
64	GO:0043097: pyrimidine nucleoside salvage	2.35E-03
65	GO:0030041: actin filament polymerization	2.35E-03
66	GO:0010236: plastoquinone biosynthetic process	2.35E-03
67	GO:0006097: glyoxylate cycle	2.35E-03
68	GO:0009107: lipoate biosynthetic process	2.35E-03
69	GO:0071493: cellular response to UV-B	2.35E-03
70	GO:0055114: oxidation-reduction process	2.86E-03
71	GO:0006206: pyrimidine nucleobase metabolic process	2.90E-03
72	GO:0010190: cytochrome b6f complex assembly	2.90E-03
73	GO:0050665: hydrogen peroxide biosynthetic process	2.90E-03
74	GO:0042549: photosystem II stabilization	2.90E-03
75	GO:1901259: chloroplast rRNA processing	3.49E-03
76	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.49E-03
77	GO:1900057: positive regulation of leaf senescence	4.12E-03
78	GO:0051510: regulation of unidimensional cell growth	4.12E-03
79	GO:0010161: red light signaling pathway	4.12E-03
80	GO:0010196: nonphotochemical quenching	4.12E-03
81	GO:0009704: de-etiolation	4.77E-03
82	GO:0016559: peroxisome fission	4.77E-03
83	GO:0010928: regulation of auxin mediated signaling pathway	4.77E-03
84	GO:0019430: removal of superoxide radicals	5.47E-03
85	GO:0006002: fructose 6-phosphate metabolic process	5.47E-03
86	GO:0006783: heme biosynthetic process	6.20E-03
87	GO:0006779: porphyrin-containing compound biosynthetic process	6.96E-03
88	GO:0009853: photorespiration	7.11E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	7.75E-03
90	GO:0006352: DNA-templated transcription, initiation	8.58E-03
91	GO:0009644: response to high light intensity	9.94E-03
92	GO:0006807: nitrogen compound metabolic process	1.03E-02
93	GO:0006108: malate metabolic process	1.03E-02
94	GO:0009266: response to temperature stimulus	1.12E-02
95	GO:0090351: seedling development	1.22E-02
96	GO:0007031: peroxisome organization	1.22E-02
97	GO:0006364: rRNA processing	1.24E-02
98	GO:0009585: red, far-red light phototransduction	1.24E-02
99	GO:0006636: unsaturated fatty acid biosynthetic process	1.32E-02
100	GO:0019762: glucosinolate catabolic process	1.32E-02
101	GO:0007010: cytoskeleton organization	1.42E-02
102	GO:0016226: iron-sulfur cluster assembly	1.73E-02
103	GO:0019748: secondary metabolic process	1.73E-02
104	GO:0010017: red or far-red light signaling pathway	1.73E-02
105	GO:0009411: response to UV	1.84E-02
106	GO:0009625: response to insect	1.84E-02
107	GO:0009561: megagametogenesis	1.95E-02
108	GO:0009409: response to cold	2.08E-02
109	GO:0006606: protein import into nucleus	2.19E-02
110	GO:0042631: cellular response to water deprivation	2.19E-02
111	GO:0071472: cellular response to salt stress	2.31E-02
112	GO:0009845: seed germination	2.40E-02
113	GO:0006814: sodium ion transport	2.43E-02
114	GO:0005975: carbohydrate metabolic process	2.52E-02
115	GO:0009791: post-embryonic development	2.55E-02
116	GO:0000302: response to reactive oxygen species	2.68E-02
117	GO:0009567: double fertilization forming a zygote and endosperm	3.07E-02
118	GO:0009734: auxin-activated signaling pathway	3.50E-02
119	GO:0042128: nitrate assimilation	3.77E-02
120	GO:0006950: response to stress	3.91E-02
121	GO:0009817: defense response to fungus, incompatible interaction	4.21E-02
122	GO:0010311: lateral root formation	4.36E-02
123	GO:0009416: response to light stimulus	4.64E-02
124	GO:0048527: lateral root development	4.66E-02
125	GO:0007568: aging	4.66E-02
126	GO:0016051: carbohydrate biosynthetic process	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
4	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
5	GO:0045550: geranylgeranyl reductase activity	0.00E+00
6	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
7	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
8	GO:0008974: phosphoribulokinase activity	0.00E+00
9	GO:0008465: glycerate dehydrogenase activity	0.00E+00
10	GO:0046408: chlorophyll synthetase activity	0.00E+00
11	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
12	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
13	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
14	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
15	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
16	GO:0090711: FMN hydrolase activity	0.00E+00
17	GO:0019843: rRNA binding	4.88E-11
18	GO:0003735: structural constituent of ribosome	2.22E-08
19	GO:0031409: pigment binding	2.23E-06
20	GO:0048038: quinone binding	2.04E-05
21	GO:0016168: chlorophyll binding	4.79E-05
22	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.90E-05
23	GO:0008266: poly(U) RNA binding	5.23E-05
24	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.70E-04
25	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.70E-04
26	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.70E-04
27	GO:0008168: methyltransferase activity	4.24E-04
28	GO:0018708: thiol S-methyltransferase activity	5.94E-04
29	GO:0019156: isoamylase activity	5.94E-04
30	GO:0000234: phosphoethanolamine N-methyltransferase activity	5.94E-04
31	GO:0008883: glutamyl-tRNA reductase activity	5.94E-04
32	GO:0047746: chlorophyllase activity	5.94E-04
33	GO:0042389: omega-3 fatty acid desaturase activity	5.94E-04
34	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.94E-04
35	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.94E-04
36	GO:0031072: heat shock protein binding	7.96E-04
37	GO:0050307: sucrose-phosphate phosphatase activity	9.62E-04
38	GO:0016992: lipoate synthase activity	9.62E-04
39	GO:0003746: translation elongation factor activity	9.69E-04
40	GO:0005528: FK506 binding	1.23E-03
41	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.38E-03
42	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.38E-03
43	GO:0004550: nucleoside diphosphate kinase activity	1.38E-03
44	GO:0008097: 5S rRNA binding	1.38E-03
45	GO:0004351: glutamate decarboxylase activity	1.38E-03
46	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.38E-03
47	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.38E-03
48	GO:0009011: starch synthase activity	1.84E-03
49	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.84E-03
50	GO:0008891: glycolate oxidase activity	1.84E-03
51	GO:0001053: plastid sigma factor activity	1.84E-03
52	GO:0008453: alanine-glyoxylate transaminase activity	1.84E-03
53	GO:0016987: sigma factor activity	1.84E-03
54	GO:0003785: actin monomer binding	2.35E-03
55	GO:0008374: O-acyltransferase activity	2.35E-03
56	GO:0004130: cytochrome-c peroxidase activity	2.90E-03
57	GO:0004784: superoxide dismutase activity	2.90E-03
58	GO:0042578: phosphoric ester hydrolase activity	2.90E-03
59	GO:0004556: alpha-amylase activity	2.90E-03
60	GO:0016615: malate dehydrogenase activity	2.90E-03
61	GO:0004332: fructose-bisphosphate aldolase activity	2.90E-03
62	GO:0030060: L-malate dehydrogenase activity	3.49E-03
63	GO:0004849: uridine kinase activity	3.49E-03
64	GO:0051920: peroxiredoxin activity	3.49E-03
65	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.49E-03
66	GO:0004033: aldo-keto reductase (NADP) activity	4.77E-03
67	GO:0016209: antioxidant activity	4.77E-03
68	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.47E-03
69	GO:0008135: translation factor activity, RNA binding	5.47E-03
70	GO:0004222: metalloendopeptidase activity	6.19E-03
71	GO:0071949: FAD binding	6.20E-03
72	GO:0016491: oxidoreductase activity	6.55E-03
73	GO:0030234: enzyme regulator activity	7.75E-03
74	GO:0042802: identical protein binding	8.25E-03
75	GO:0051537: 2 iron, 2 sulfur cluster binding	9.94E-03
76	GO:0005315: inorganic phosphate transmembrane transporter activity	1.03E-02
77	GO:0004089: carbonate dehydratase activity	1.03E-02
78	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.07E-02
79	GO:0051536: iron-sulfur cluster binding	1.42E-02
80	GO:0016787: hydrolase activity	1.68E-02
81	GO:0051082: unfolded protein binding	1.77E-02
82	GO:0008514: organic anion transmembrane transporter activity	1.95E-02
83	GO:0010181: FMN binding	2.43E-02
84	GO:0050662: coenzyme binding	2.43E-02
85	GO:0009055: electron carrier activity	2.49E-02
86	GO:0004721: phosphoprotein phosphatase activity	3.91E-02
87	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.06E-02
88	GO:0004601: peroxidase activity	4.72E-02