co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G44780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0035884: arabinan biosynthetic process	0.00E+00
4	GO:0097164: ammonium ion metabolic process	0.00E+00
5	GO:0045184: establishment of protein localization	0.00E+00
6	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
7	GO:0006399: tRNA metabolic process	0.00E+00
8	GO:0015843: methylammonium transport	0.00E+00
9	GO:0031222: arabinan catabolic process	0.00E+00
10	GO:0070979: protein K11-linked ubiquitination	0.00E+00
11	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
12	GO:0030155: regulation of cell adhesion	0.00E+00
13	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
14	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
15	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
16	GO:0009606: tropism	0.00E+00
17	GO:0046620: regulation of organ growth	7.56E-11
18	GO:0009734: auxin-activated signaling pathway	1.38E-09
19	GO:0009733: response to auxin	3.35E-08
20	GO:0009658: chloroplast organization	6.08E-08
21	GO:0009657: plastid organization	1.45E-06
22	GO:0009926: auxin polar transport	1.64E-06
23	GO:0040008: regulation of growth	8.40E-06
24	GO:0042793: transcription from plastid promoter	1.12E-05
25	GO:0000373: Group II intron splicing	8.09E-05
26	GO:0016556: mRNA modification	1.09E-04
27	GO:0032502: developmental process	2.11E-04
28	GO:0010020: chloroplast fission	2.90E-04
29	GO:0009451: RNA modification	4.25E-04
30	GO:2000067: regulation of root morphogenesis	5.24E-04
31	GO:0090558: plant epidermis development	5.98E-04
32	GO:0010063: positive regulation of trichoblast fate specification	5.98E-04
33	GO:0010480: microsporocyte differentiation	5.98E-04
34	GO:0035987: endodermal cell differentiation	5.98E-04
35	GO:0006436: tryptophanyl-tRNA aminoacylation	5.98E-04
36	GO:0034080: CENP-A containing nucleosome assembly	5.98E-04
37	GO:0000066: mitochondrial ornithine transport	5.98E-04
38	GO:0050801: ion homeostasis	5.98E-04
39	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	5.98E-04
40	GO:0042659: regulation of cell fate specification	5.98E-04
41	GO:0051418: microtubule nucleation by microtubule organizing center	5.98E-04
42	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	5.98E-04
43	GO:0070509: calcium ion import	5.98E-04
44	GO:0048437: floral organ development	6.70E-04
45	GO:0042255: ribosome assembly	8.34E-04
46	GO:0007389: pattern specification process	1.01E-03
47	GO:0000902: cell morphogenesis	1.21E-03
48	GO:0018026: peptidyl-lysine monomethylation	1.29E-03
49	GO:0071497: cellular response to freezing	1.29E-03
50	GO:0009220: pyrimidine ribonucleotide biosynthetic process	1.29E-03
51	GO:1904143: positive regulation of carotenoid biosynthetic process	1.29E-03
52	GO:0006529: asparagine biosynthetic process	1.29E-03
53	GO:0009875: pollen-pistil interaction	1.29E-03
54	GO:2000123: positive regulation of stomatal complex development	1.29E-03
55	GO:0033566: gamma-tubulin complex localization	1.29E-03
56	GO:0070981: L-asparagine biosynthetic process	1.29E-03
57	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.29E-03
58	GO:0031425: chloroplast RNA processing	1.43E-03
59	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.61E-03
60	GO:0010252: auxin homeostasis	1.83E-03
61	GO:0010015: root morphogenesis	1.94E-03
62	GO:0007275: multicellular organism development	2.07E-03
63	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.12E-03
64	GO:0006760: folic acid-containing compound metabolic process	2.12E-03
65	GO:0007052: mitotic spindle organization	2.12E-03
66	GO:0045910: negative regulation of DNA recombination	2.12E-03
67	GO:0010447: response to acidic pH	2.12E-03
68	GO:0048281: inflorescence morphogenesis	2.12E-03
69	GO:0051127: positive regulation of actin nucleation	2.12E-03
70	GO:0090708: specification of plant organ axis polarity	2.12E-03
71	GO:0006954: inflammatory response	2.12E-03
72	GO:0046739: transport of virus in multicellular host	3.07E-03
73	GO:2000904: regulation of starch metabolic process	3.07E-03
74	GO:0010148: transpiration	3.07E-03
75	GO:0043572: plastid fission	3.07E-03
76	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	3.07E-03
77	GO:2001141: regulation of RNA biosynthetic process	3.07E-03
78	GO:0034508: centromere complex assembly	3.07E-03
79	GO:1902476: chloride transmembrane transport	3.07E-03
80	GO:0010071: root meristem specification	3.07E-03
81	GO:0051513: regulation of monopolar cell growth	3.07E-03
82	GO:0007231: osmosensory signaling pathway	3.07E-03
83	GO:0030071: regulation of mitotic metaphase/anaphase transition	3.07E-03
84	GO:0051639: actin filament network formation	3.07E-03
85	GO:0010239: chloroplast mRNA processing	3.07E-03
86	GO:0044211: CTP salvage	3.07E-03
87	GO:0090307: mitotic spindle assembly	3.07E-03
88	GO:0015696: ammonium transport	3.07E-03
89	GO:0070588: calcium ion transmembrane transport	3.20E-03
90	GO:0009742: brassinosteroid mediated signaling pathway	3.37E-03
91	GO:0042254: ribosome biogenesis	3.88E-03
92	GO:0005992: trehalose biosynthetic process	3.96E-03
93	GO:0009944: polarity specification of adaxial/abaxial axis	3.96E-03
94	GO:0044205: 'de novo' UMP biosynthetic process	4.15E-03
95	GO:0044206: UMP salvage	4.15E-03
96	GO:1901141: regulation of lignin biosynthetic process	4.15E-03
97	GO:0051764: actin crosslink formation	4.15E-03
98	GO:0015846: polyamine transport	4.15E-03
99	GO:0030104: water homeostasis	4.15E-03
100	GO:0033500: carbohydrate homeostasis	4.15E-03
101	GO:0072488: ammonium transmembrane transport	4.15E-03
102	GO:2000038: regulation of stomatal complex development	4.15E-03
103	GO:0046656: folic acid biosynthetic process	4.15E-03
104	GO:0051302: regulation of cell division	4.38E-03
105	GO:0009904: chloroplast accumulation movement	5.32E-03
106	GO:0048497: maintenance of floral organ identity	5.32E-03
107	GO:0009107: lipoate biosynthetic process	5.32E-03
108	GO:1902183: regulation of shoot apical meristem development	5.32E-03
109	GO:0016123: xanthophyll biosynthetic process	5.32E-03
110	GO:0010438: cellular response to sulfur starvation	5.32E-03
111	GO:0010158: abaxial cell fate specification	5.32E-03
112	GO:0032876: negative regulation of DNA endoreduplication	5.32E-03
113	GO:0010375: stomatal complex patterning	5.32E-03
114	GO:0080167: response to karrikin	5.48E-03
115	GO:0010082: regulation of root meristem growth	5.77E-03
116	GO:0071555: cell wall organization	5.88E-03
117	GO:0010315: auxin efflux	6.60E-03
118	GO:0006206: pyrimidine nucleobase metabolic process	6.60E-03
119	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.60E-03
120	GO:0009228: thiamine biosynthetic process	6.60E-03
121	GO:0010405: arabinogalactan protein metabolic process	6.60E-03
122	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.60E-03
123	GO:0009913: epidermal cell differentiation	6.60E-03
124	GO:0006655: phosphatidylglycerol biosynthetic process	6.60E-03
125	GO:0008033: tRNA processing	7.36E-03
126	GO:0009741: response to brassinosteroid	7.95E-03
127	GO:0017148: negative regulation of translation	7.98E-03
128	GO:0009942: longitudinal axis specification	7.98E-03
129	GO:0046654: tetrahydrofolate biosynthetic process	7.98E-03
130	GO:1901259: chloroplast rRNA processing	7.98E-03
131	GO:0009903: chloroplast avoidance movement	7.98E-03
132	GO:0030488: tRNA methylation	7.98E-03
133	GO:0080086: stamen filament development	7.98E-03
134	GO:0009955: adaxial/abaxial pattern specification	7.98E-03
135	GO:0048544: recognition of pollen	8.55E-03
136	GO:0009646: response to absence of light	8.55E-03
137	GO:0006400: tRNA modification	9.45E-03
138	GO:0030307: positive regulation of cell growth	9.45E-03
139	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	9.45E-03
140	GO:0010103: stomatal complex morphogenesis	9.45E-03
141	GO:0048528: post-embryonic root development	9.45E-03
142	GO:0007050: cell cycle arrest	9.45E-03
143	GO:0006821: chloride transport	9.45E-03
144	GO:0070370: cellular heat acclimation	9.45E-03
145	GO:0010050: vegetative phase change	9.45E-03
146	GO:0009416: response to light stimulus	1.01E-02
147	GO:0009850: auxin metabolic process	1.10E-02
148	GO:0009704: de-etiolation	1.10E-02
149	GO:0032875: regulation of DNA endoreduplication	1.10E-02
150	GO:0006353: DNA-templated transcription, termination	1.10E-02
151	GO:0048766: root hair initiation	1.10E-02
152	GO:0070413: trehalose metabolism in response to stress	1.10E-02
153	GO:0055075: potassium ion homeostasis	1.10E-02
154	GO:0006096: glycolytic process	1.10E-02
155	GO:0010439: regulation of glucosinolate biosynthetic process	1.10E-02
156	GO:0001522: pseudouridine synthesis	1.10E-02
157	GO:0009828: plant-type cell wall loosening	1.20E-02
158	GO:0010497: plasmodesmata-mediated intercellular transport	1.27E-02
159	GO:0006526: arginine biosynthetic process	1.27E-02
160	GO:0006002: fructose 6-phosphate metabolic process	1.27E-02
161	GO:0071482: cellular response to light stimulus	1.27E-02
162	GO:0001558: regulation of cell growth	1.27E-02
163	GO:0009827: plant-type cell wall modification	1.27E-02
164	GO:0009051: pentose-phosphate shunt, oxidative branch	1.44E-02
165	GO:0006098: pentose-phosphate shunt	1.44E-02
166	GO:2000024: regulation of leaf development	1.44E-02
167	GO:0006974: cellular response to DNA damage stimulus	1.60E-02
168	GO:0009638: phototropism	1.62E-02
169	GO:0042761: very long-chain fatty acid biosynthetic process	1.62E-02
170	GO:2000280: regulation of root development	1.62E-02
171	GO:1900865: chloroplast RNA modification	1.62E-02
172	GO:0010411: xyloglucan metabolic process	1.69E-02
173	GO:0006535: cysteine biosynthetic process from serine	1.81E-02
174	GO:0009641: shade avoidance	1.81E-02
175	GO:0006298: mismatch repair	1.81E-02
176	GO:0006949: syncytium formation	1.81E-02
177	GO:0006259: DNA metabolic process	1.81E-02
178	GO:0048481: plant ovule development	1.87E-02
179	GO:0009682: induced systemic resistance	2.01E-02
180	GO:0006352: DNA-templated transcription, initiation	2.01E-02
181	GO:0048229: gametophyte development	2.01E-02
182	GO:0006265: DNA topological change	2.01E-02
183	GO:0006816: calcium ion transport	2.01E-02
184	GO:0009773: photosynthetic electron transport in photosystem I	2.01E-02
185	GO:0016024: CDP-diacylglycerol biosynthetic process	2.21E-02
186	GO:0045037: protein import into chloroplast stroma	2.21E-02
187	GO:0010582: floral meristem determinacy	2.21E-02
188	GO:0009790: embryo development	2.25E-02
189	GO:0009637: response to blue light	2.38E-02
190	GO:0010628: positive regulation of gene expression	2.42E-02
191	GO:0009785: blue light signaling pathway	2.42E-02
192	GO:0006006: glucose metabolic process	2.42E-02
193	GO:0009691: cytokinin biosynthetic process	2.42E-02
194	GO:0030036: actin cytoskeleton organization	2.42E-02
195	GO:0010075: regulation of meristem growth	2.42E-02
196	GO:0006094: gluconeogenesis	2.42E-02
197	GO:0009767: photosynthetic electron transport chain	2.42E-02
198	GO:2000012: regulation of auxin polar transport	2.42E-02
199	GO:0009934: regulation of meristem structural organization	2.64E-02
200	GO:0010207: photosystem II assembly	2.64E-02
201	GO:0006541: glutamine metabolic process	2.64E-02
202	GO:0006839: mitochondrial transport	2.71E-02
203	GO:0007623: circadian rhythm	2.78E-02
204	GO:0010039: response to iron ion	2.87E-02
205	GO:0008283: cell proliferation	3.07E-02
206	GO:0006071: glycerol metabolic process	3.10E-02
207	GO:0006833: water transport	3.10E-02
208	GO:0010025: wax biosynthetic process	3.10E-02
209	GO:0042546: cell wall biogenesis	3.19E-02
210	GO:0000027: ribosomal large subunit assembly	3.33E-02
211	GO:0030150: protein import into mitochondrial matrix	3.33E-02
212	GO:0051017: actin filament bundle assembly	3.33E-02
213	GO:0019344: cysteine biosynthetic process	3.33E-02
214	GO:0009116: nucleoside metabolic process	3.33E-02
215	GO:0009965: leaf morphogenesis	3.45E-02
216	GO:0008380: RNA splicing	3.47E-02
217	GO:0006508: proteolysis	3.51E-02
218	GO:0006825: copper ion transport	3.58E-02
219	GO:0006418: tRNA aminoacylation for protein translation	3.58E-02
220	GO:0016998: cell wall macromolecule catabolic process	3.82E-02
221	GO:0009664: plant-type cell wall organization	3.85E-02
222	GO:0006730: one-carbon metabolic process	4.08E-02
223	GO:0031348: negative regulation of defense response	4.08E-02
224	GO:0080092: regulation of pollen tube growth	4.08E-02
225	GO:0001944: vasculature development	4.34E-02
226	GO:0009625: response to insect	4.34E-02
227	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.34E-02
228	GO:0042127: regulation of cell proliferation	4.60E-02
229	GO:0010091: trichome branching	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0004056: argininosuccinate lyase activity	0.00E+00
2	GO:0004358: glutamate N-acetyltransferase activity	0.00E+00
3	GO:0004588: orotate phosphoribosyltransferase activity	0.00E+00
4	GO:0004590: orotidine-5'-phosphate decarboxylase activity	0.00E+00
5	GO:0019808: polyamine binding	0.00E+00
6	GO:0004519: endonuclease activity	7.52E-05
7	GO:0019843: rRNA binding	2.00E-04
8	GO:0005290: L-histidine transmembrane transporter activity	5.98E-04
9	GO:0004008: copper-exporting ATPase activity	5.98E-04
10	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	5.98E-04
11	GO:0004071: aspartate-ammonia ligase activity	5.98E-04
12	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	5.98E-04
13	GO:0052381: tRNA dimethylallyltransferase activity	5.98E-04
14	GO:0004830: tryptophan-tRNA ligase activity	5.98E-04
15	GO:0050139: nicotinate-N-glucosyltransferase activity	5.98E-04
16	GO:0000064: L-ornithine transmembrane transporter activity	1.29E-03
17	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.29E-03
18	GO:0017118: lipoyltransferase activity	1.29E-03
19	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.29E-03
20	GO:0016415: octanoyltransferase activity	1.29E-03
21	GO:0102083: 7,8-dihydromonapterin aldolase activity	1.29E-03
22	GO:0004150: dihydroneopterin aldolase activity	1.29E-03
23	GO:0008805: carbon-monoxide oxygenase activity	1.29E-03
24	GO:0009672: auxin:proton symporter activity	1.43E-03
25	GO:0004805: trehalose-phosphatase activity	1.67E-03
26	GO:0003723: RNA binding	1.70E-03
27	GO:0004557: alpha-galactosidase activity	2.12E-03
28	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.12E-03
29	GO:0052692: raffinose alpha-galactosidase activity	2.12E-03
30	GO:0070330: aromatase activity	2.12E-03
31	GO:0017150: tRNA dihydrouridine synthase activity	2.12E-03
32	GO:0010329: auxin efflux transmembrane transporter activity	2.52E-03
33	GO:0005262: calcium channel activity	2.52E-03
34	GO:0015181: arginine transmembrane transporter activity	3.07E-03
35	GO:0043023: ribosomal large subunit binding	3.07E-03
36	GO:0001872: (1->3)-beta-D-glucan binding	3.07E-03
37	GO:0015189: L-lysine transmembrane transporter activity	3.07E-03
38	GO:0019199: transmembrane receptor protein kinase activity	4.15E-03
39	GO:0005253: anion channel activity	4.15E-03
40	GO:0042277: peptide binding	4.15E-03
41	GO:0046556: alpha-L-arabinofuranosidase activity	4.15E-03
42	GO:0016279: protein-lysine N-methyltransferase activity	4.15E-03
43	GO:0001053: plastid sigma factor activity	4.15E-03
44	GO:0004845: uracil phosphoribosyltransferase activity	4.15E-03
45	GO:0004345: glucose-6-phosphate dehydrogenase activity	4.15E-03
46	GO:0016987: sigma factor activity	4.15E-03
47	GO:0043015: gamma-tubulin binding	4.15E-03
48	GO:0004176: ATP-dependent peptidase activity	4.82E-03
49	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.32E-03
50	GO:0018685: alkane 1-monooxygenase activity	5.32E-03
51	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.32E-03
52	GO:0003727: single-stranded RNA binding	6.27E-03
53	GO:0008519: ammonium transmembrane transporter activity	6.60E-03
54	GO:0005247: voltage-gated chloride channel activity	6.60E-03
55	GO:0030983: mismatched DNA binding	6.60E-03
56	GO:0004605: phosphatidate cytidylyltransferase activity	6.60E-03
57	GO:0080030: methyl indole-3-acetate esterase activity	6.60E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.60E-03
59	GO:0004332: fructose-bisphosphate aldolase activity	6.60E-03
60	GO:0043621: protein self-association	6.68E-03
61	GO:0004656: procollagen-proline 4-dioxygenase activity	7.98E-03
62	GO:0004124: cysteine synthase activity	7.98E-03
63	GO:0008195: phosphatidate phosphatase activity	7.98E-03
64	GO:0004849: uridine kinase activity	7.98E-03
65	GO:0003872: 6-phosphofructokinase activity	9.45E-03
66	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.84E-03
67	GO:0043022: ribosome binding	1.10E-02
68	GO:0008173: RNA methyltransferase activity	1.27E-02
69	GO:0005375: copper ion transmembrane transporter activity	1.27E-02
70	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.27E-02
71	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.44E-02
72	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.69E-02
73	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.01E-02
74	GO:0000976: transcription regulatory region sequence-specific DNA binding	2.21E-02
75	GO:0003746: translation elongation factor activity	2.38E-02
76	GO:0004022: alcohol dehydrogenase (NAD) activity	2.42E-02
77	GO:0015266: protein channel activity	2.42E-02
78	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.42E-02
79	GO:0031072: heat shock protein binding	2.42E-02
80	GO:0009982: pseudouridine synthase activity	2.42E-02
81	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.64E-02
82	GO:0042393: histone binding	2.71E-02
83	GO:0003735: structural constituent of ribosome	2.83E-02
84	GO:0031418: L-ascorbic acid binding	3.33E-02
85	GO:0005345: purine nucleobase transmembrane transporter activity	3.58E-02
86	GO:0033612: receptor serine/threonine kinase binding	3.82E-02
87	GO:0008408: 3'-5' exonuclease activity	3.82E-02
88	GO:0003690: double-stranded DNA binding	4.27E-02
89	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.55E-02
90	GO:0005215: transporter activity	4.60E-02
91	GO:0047134: protein-disulfide reductase activity	4.87E-02
92	GO:0004812: aminoacyl-tRNA ligase activity	4.87E-02
93	GO:0016788: hydrolase activity, acting on ester bonds	4.88E-02