Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G44446

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
3GO:0005996: monosaccharide metabolic process0.00E+00
4GO:0046471: phosphatidylglycerol metabolic process0.00E+00
5GO:0006982: response to lipid hydroperoxide0.00E+00
6GO:0010335: response to non-ionic osmotic stress0.00E+00
7GO:0006094: gluconeogenesis5.20E-08
8GO:0010207: photosystem II assembly7.50E-08
9GO:0015979: photosynthesis1.43E-06
10GO:0030388: fructose 1,6-bisphosphate metabolic process6.33E-06
11GO:0055114: oxidation-reduction process1.01E-05
12GO:0015995: chlorophyll biosynthetic process1.02E-05
13GO:0006000: fructose metabolic process2.21E-05
14GO:0009658: chloroplast organization3.51E-05
15GO:0009773: photosynthetic electron transport in photosystem I5.94E-05
16GO:0015994: chlorophyll metabolic process8.61E-05
17GO:0010600: regulation of auxin biosynthetic process8.61E-05
18GO:0019253: reductive pentose-phosphate cycle1.09E-04
19GO:0006636: unsaturated fatty acid biosynthetic process1.52E-04
20GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.60E-04
21GO:0051180: vitamin transport3.75E-04
22GO:0015969: guanosine tetraphosphate metabolic process3.75E-04
23GO:0030974: thiamine pyrophosphate transport3.75E-04
24GO:0046467: membrane lipid biosynthetic process3.75E-04
25GO:0043953: protein transport by the Tat complex3.75E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process3.75E-04
27GO:0010426: DNA methylation on cytosine within a CHH sequence3.75E-04
28GO:1904964: positive regulation of phytol biosynthetic process3.75E-04
29GO:0071277: cellular response to calcium ion3.75E-04
30GO:0065002: intracellular protein transmembrane transport3.75E-04
31GO:0043087: regulation of GTPase activity3.75E-04
32GO:0071461: cellular response to redox state3.75E-04
33GO:0046167: glycerol-3-phosphate biosynthetic process3.75E-04
34GO:0043007: maintenance of rDNA3.75E-04
35GO:0034337: RNA folding3.75E-04
36GO:0019510: S-adenosylhomocysteine catabolic process3.75E-04
37GO:0010928: regulation of auxin mediated signaling pathway4.22E-04
38GO:0009704: de-etiolation4.22E-04
39GO:0032544: plastid translation5.17E-04
40GO:0006002: fructose 6-phosphate metabolic process5.17E-04
41GO:0071482: cellular response to light stimulus5.17E-04
42GO:0019252: starch biosynthetic process5.46E-04
43GO:0009735: response to cytokinin5.85E-04
44GO:0006098: pentose-phosphate shunt6.19E-04
45GO:0006754: ATP biosynthetic process6.19E-04
46GO:0006096: glycolytic process7.98E-04
47GO:0042819: vitamin B6 biosynthetic process8.15E-04
48GO:0080005: photosystem stoichiometry adjustment8.15E-04
49GO:0033353: S-adenosylmethionine cycle8.15E-04
50GO:1902326: positive regulation of chlorophyll biosynthetic process8.15E-04
51GO:0015893: drug transport8.15E-04
52GO:0006650: glycerophospholipid metabolic process8.15E-04
53GO:0008616: queuosine biosynthetic process8.15E-04
54GO:0006729: tetrahydrobiopterin biosynthetic process8.15E-04
55GO:0018119: peptidyl-cysteine S-nitrosylation9.79E-04
56GO:0005986: sucrose biosynthetic process1.27E-03
57GO:0046168: glycerol-3-phosphate catabolic process1.32E-03
58GO:0044375: regulation of peroxisome size1.32E-03
59GO:0006081: cellular aldehyde metabolic process1.32E-03
60GO:0007031: peroxisome organization1.60E-03
61GO:0006072: glycerol-3-phosphate metabolic process1.91E-03
62GO:0008615: pyridoxine biosynthetic process1.91E-03
63GO:0010731: protein glutathionylation1.91E-03
64GO:0042823: pyridoxal phosphate biosynthetic process1.91E-03
65GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.91E-03
66GO:2001141: regulation of RNA biosynthetic process1.91E-03
67GO:0071484: cellular response to light intensity1.91E-03
68GO:0009152: purine ribonucleotide biosynthetic process1.91E-03
69GO:0046653: tetrahydrofolate metabolic process1.91E-03
70GO:0009765: photosynthesis, light harvesting2.56E-03
71GO:0045727: positive regulation of translation2.56E-03
72GO:0006546: glycine catabolic process2.56E-03
73GO:0010021: amylopectin biosynthetic process2.56E-03
74GO:0015689: molybdate ion transport2.56E-03
75GO:0006810: transport2.71E-03
76GO:0032259: methylation2.91E-03
77GO:0019722: calcium-mediated signaling3.11E-03
78GO:0006465: signal peptide processing3.28E-03
79GO:0043097: pyrimidine nucleoside salvage3.28E-03
80GO:0009107: lipoate biosynthetic process3.28E-03
81GO:0016123: xanthophyll biosynthetic process3.28E-03
82GO:0009585: red, far-red light phototransduction3.60E-03
83GO:0042631: cellular response to water deprivation3.64E-03
84GO:0006520: cellular amino acid metabolic process3.92E-03
85GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.05E-03
86GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.05E-03
87GO:0006206: pyrimidine nucleobase metabolic process4.05E-03
88GO:0042549: photosystem II stabilization4.05E-03
89GO:0045926: negative regulation of growth4.88E-03
90GO:0017148: negative regulation of translation4.88E-03
91GO:1901259: chloroplast rRNA processing4.88E-03
92GO:0000054: ribosomal subunit export from nucleus4.88E-03
93GO:0010189: vitamin E biosynthetic process4.88E-03
94GO:0009854: oxidative photosynthetic carbon pathway4.88E-03
95GO:0010019: chloroplast-nucleus signaling pathway4.88E-03
96GO:0032502: developmental process5.18E-03
97GO:1900056: negative regulation of leaf senescence5.77E-03
98GO:1900057: positive regulation of leaf senescence5.77E-03
99GO:0010161: red light signaling pathway5.77E-03
100GO:0009772: photosynthetic electron transport in photosystem II5.77E-03
101GO:0007267: cell-cell signaling6.24E-03
102GO:0009690: cytokinin metabolic process6.70E-03
103GO:0042255: ribosome assembly6.70E-03
104GO:0006353: DNA-templated transcription, termination6.70E-03
105GO:0009231: riboflavin biosynthetic process6.70E-03
106GO:0016559: peroxisome fission6.70E-03
107GO:0007155: cell adhesion6.70E-03
108GO:0010027: thylakoid membrane organization7.02E-03
109GO:0044550: secondary metabolite biosynthetic process7.44E-03
110GO:0009657: plastid organization7.69E-03
111GO:0006526: arginine biosynthetic process7.69E-03
112GO:0009932: cell tip growth7.69E-03
113GO:0009058: biosynthetic process8.06E-03
114GO:0005975: carbohydrate metabolic process8.25E-03
115GO:0010411: xyloglucan metabolic process8.27E-03
116GO:0009821: alkaloid biosynthetic process8.73E-03
117GO:0090305: nucleic acid phosphodiester bond hydrolysis8.73E-03
118GO:0010206: photosystem II repair8.73E-03
119GO:0090333: regulation of stomatal closure8.73E-03
120GO:0006783: heme biosynthetic process8.73E-03
121GO:0018298: protein-chromophore linkage9.17E-03
122GO:0006779: porphyrin-containing compound biosynthetic process9.82E-03
123GO:0010267: production of ta-siRNAs involved in RNA interference9.82E-03
124GO:0010380: regulation of chlorophyll biosynthetic process9.82E-03
125GO:0010205: photoinhibition9.82E-03
126GO:0006782: protoporphyrinogen IX biosynthetic process1.10E-02
127GO:0009688: abscisic acid biosynthetic process1.10E-02
128GO:0043069: negative regulation of programmed cell death1.10E-02
129GO:0009853: photorespiration1.17E-02
130GO:0019684: photosynthesis, light reaction1.21E-02
131GO:0043085: positive regulation of catalytic activity1.21E-02
132GO:0006352: DNA-templated transcription, initiation1.21E-02
133GO:0000272: polysaccharide catabolic process1.21E-02
134GO:0006415: translational termination1.21E-02
135GO:0034599: cellular response to oxidative stress1.22E-02
136GO:0018107: peptidyl-threonine phosphorylation1.46E-02
137GO:0009725: response to hormone1.46E-02
138GO:0009767: photosynthetic electron transport chain1.46E-02
139GO:0010114: response to red light1.51E-02
140GO:0042546: cell wall biogenesis1.57E-02
141GO:0034605: cellular response to heat1.59E-02
142GO:0009266: response to temperature stimulus1.59E-02
143GO:0009636: response to toxic substance1.69E-02
144GO:0005985: sucrose metabolic process1.73E-02
145GO:0010025: wax biosynthetic process1.87E-02
146GO:0009833: plant-type primary cell wall biogenesis1.87E-02
147GO:0019762: glucosinolate catabolic process1.87E-02
148GO:0006406: mRNA export from nucleus2.01E-02
149GO:0009768: photosynthesis, light harvesting in photosystem I2.15E-02
150GO:0006857: oligopeptide transport2.18E-02
151GO:0061077: chaperone-mediated protein folding2.30E-02
152GO:0031408: oxylipin biosynthetic process2.30E-02
153GO:0006306: DNA methylation2.30E-02
154GO:0043086: negative regulation of catalytic activity2.41E-02
155GO:0010017: red or far-red light signaling pathway2.46E-02
156GO:0016226: iron-sulfur cluster assembly2.46E-02
157GO:0030433: ubiquitin-dependent ERAD pathway2.46E-02
158GO:0006730: one-carbon metabolic process2.46E-02
159GO:0007005: mitochondrion organization2.46E-02
160GO:0019748: secondary metabolic process2.46E-02
161GO:0030245: cellulose catabolic process2.46E-02
162GO:0009693: ethylene biosynthetic process2.62E-02
163GO:0006817: phosphate ion transport2.78E-02
164GO:0009561: megagametogenesis2.78E-02
165GO:0009306: protein secretion2.78E-02
166GO:0071555: cell wall organization2.87E-02
167GO:0006396: RNA processing2.98E-02
168GO:0009742: brassinosteroid mediated signaling pathway3.07E-02
169GO:0006606: protein import into nucleus3.11E-02
170GO:0006662: glycerol ether metabolic process3.28E-02
171GO:0010182: sugar mediated signaling pathway3.28E-02
172GO:0048868: pollen tube development3.28E-02
173GO:0009741: response to brassinosteroid3.28E-02
174GO:0015986: ATP synthesis coupled proton transport3.45E-02
175GO:0006814: sodium ion transport3.45E-02
176GO:0007059: chromosome segregation3.45E-02
177GO:0009646: response to absence of light3.45E-02
178GO:0008654: phospholipid biosynthetic process3.63E-02
179GO:0010583: response to cyclopentenone3.99E-02
180GO:0031047: gene silencing by RNA3.99E-02
181GO:0007264: small GTPase mediated signal transduction3.99E-02
182GO:0009567: double fertilization forming a zygote and endosperm4.36E-02
183GO:0006633: fatty acid biosynthetic process4.54E-02
184GO:0006413: translational initiation4.65E-02
185GO:0009409: response to cold4.71E-02
186GO:0007623: circadian rhythm4.98E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
3GO:0045550: geranylgeranyl reductase activity0.00E+00
4GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0008974: phosphoribulokinase activity0.00E+00
7GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
8GO:0008465: glycerate dehydrogenase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
11GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
12GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
13GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
14GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
15GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
16GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
17GO:0004332: fructose-bisphosphate aldolase activity3.36E-06
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.33E-06
19GO:0018708: thiol S-methyltransferase activity6.33E-06
20GO:0004373: glycogen (starch) synthase activity2.21E-05
21GO:0016491: oxidoreductase activity5.47E-05
22GO:0009011: starch synthase activity8.61E-05
23GO:0004565: beta-galactosidase activity9.04E-05
24GO:0031072: heat shock protein binding9.04E-05
25GO:0019843: rRNA binding2.75E-04
26GO:0019899: enzyme binding3.37E-04
27GO:0090422: thiamine pyrophosphate transporter activity3.75E-04
28GO:0004013: adenosylhomocysteinase activity3.75E-04
29GO:0080132: fatty acid alpha-hydroxylase activity3.75E-04
30GO:0010313: phytochrome binding3.75E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.75E-04
32GO:0035671: enone reductase activity3.75E-04
33GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.75E-04
34GO:0046906: tetrapyrrole binding3.75E-04
35GO:0004451: isocitrate lyase activity3.75E-04
36GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.17E-04
37GO:0051287: NAD binding5.24E-04
38GO:0071949: FAD binding6.19E-04
39GO:0008479: queuine tRNA-ribosyltransferase activity8.15E-04
40GO:0043024: ribosomal small subunit binding8.15E-04
41GO:0004802: transketolase activity8.15E-04
42GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity8.15E-04
43GO:0008728: GTP diphosphokinase activity8.15E-04
44GO:0008883: glutamyl-tRNA reductase activity8.15E-04
45GO:0047746: chlorophyllase activity8.15E-04
46GO:0042389: omega-3 fatty acid desaturase activity8.15E-04
47GO:0010297: heteropolysaccharide binding8.15E-04
48GO:0009977: proton motive force dependent protein transmembrane transporter activity8.15E-04
49GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity8.15E-04
50GO:0004047: aminomethyltransferase activity8.15E-04
51GO:0033201: alpha-1,4-glucan synthase activity8.15E-04
52GO:0030234: enzyme regulator activity8.52E-04
53GO:0005315: inorganic phosphate transmembrane transporter activity1.27E-03
54GO:0016992: lipoate synthase activity1.32E-03
55GO:0003935: GTP cyclohydrolase II activity1.32E-03
56GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.32E-03
57GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.32E-03
58GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity1.32E-03
59GO:0008864: formyltetrahydrofolate deformylase activity1.32E-03
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.32E-03
61GO:0048027: mRNA 5'-UTR binding1.91E-03
62GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.91E-03
63GO:0016851: magnesium chelatase activity1.91E-03
64GO:0005528: FK506 binding1.97E-03
65GO:0016987: sigma factor activity2.56E-03
66GO:0015098: molybdate ion transmembrane transporter activity2.56E-03
67GO:0043495: protein anchor2.56E-03
68GO:0001053: plastid sigma factor activity2.56E-03
69GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.56E-03
70GO:0003727: single-stranded RNA binding3.11E-03
71GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.28E-03
72GO:0042802: identical protein binding3.50E-03
73GO:0004029: aldehyde dehydrogenase (NAD) activity4.05E-03
74GO:0035673: oligopeptide transmembrane transporter activity4.05E-03
75GO:0042578: phosphoric ester hydrolase activity4.05E-03
76GO:0008168: methyltransferase activity4.46E-03
77GO:0048038: quinone binding4.84E-03
78GO:0016762: xyloglucan:xyloglucosyl transferase activity4.84E-03
79GO:0004849: uridine kinase activity4.88E-03
80GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.88E-03
81GO:0004518: nuclease activity5.18E-03
82GO:0051082: unfolded protein binding5.65E-03
83GO:0016168: chlorophyll binding7.42E-03
84GO:0016798: hydrolase activity, acting on glycosyl bonds8.27E-03
85GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism8.73E-03
86GO:0016844: strictosidine synthase activity9.82E-03
87GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.82E-03
88GO:0015198: oligopeptide transporter activity1.34E-02
89GO:0004364: glutathione transferase activity1.45E-02
90GO:0008266: poly(U) RNA binding1.59E-02
91GO:0015293: symporter activity1.69E-02
92GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.76E-02
93GO:0031409: pigment binding1.87E-02
94GO:0051536: iron-sulfur cluster binding2.01E-02
95GO:0003690: double-stranded DNA binding2.11E-02
96GO:0008810: cellulase activity2.62E-02
97GO:0016760: cellulose synthase (UDP-forming) activity2.62E-02
98GO:0022891: substrate-specific transmembrane transporter activity2.62E-02
99GO:0008514: organic anion transmembrane transporter activity2.78E-02
100GO:0047134: protein-disulfide reductase activity2.94E-02
101GO:0008080: N-acetyltransferase activity3.28E-02
102GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.28E-02
103GO:0004871: signal transducer activity3.44E-02
104GO:0042803: protein homodimerization activity3.44E-02
105GO:0050662: coenzyme binding3.45E-02
106GO:0004791: thioredoxin-disulfide reductase activity3.45E-02
107GO:0004872: receptor activity3.63E-02
108GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.17E-02
109GO:0008565: protein transporter activity4.33E-02
110GO:0016759: cellulose synthase activity4.36E-02
111GO:0008483: transaminase activity4.55E-02
112GO:0016722: oxidoreductase activity, oxidizing metal ions4.55E-02
113GO:0046910: pectinesterase inhibitor activity4.65E-02
114GO:0005507: copper ion binding4.65E-02
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Gene type



Gene DE type