Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G36390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006114: glycerol biosynthetic process0.00E+00
2GO:0018023: peptidyl-lysine trimethylation0.00E+00
3GO:0071474: cellular hyperosmotic response0.00E+00
4GO:1902458: positive regulation of stomatal opening0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0046460: neutral lipid biosynthetic process0.00E+00
8GO:0090470: shoot organ boundary specification0.00E+00
9GO:0090279: regulation of calcium ion import0.00E+00
10GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
11GO:0031116: positive regulation of microtubule polymerization0.00E+00
12GO:0042407: cristae formation0.00E+00
13GO:0042821: pyridoxal biosynthetic process0.00E+00
14GO:0042820: vitamin B6 catabolic process0.00E+00
15GO:0042817: pyridoxal metabolic process0.00E+00
16GO:0010207: photosystem II assembly4.87E-06
17GO:1903426: regulation of reactive oxygen species biosynthetic process7.32E-06
18GO:0006021: inositol biosynthetic process9.74E-05
19GO:0045038: protein import into chloroplast thylakoid membrane1.51E-04
20GO:0015995: chlorophyll biosynthetic process1.73E-04
21GO:0009648: photoperiodism2.91E-04
22GO:0000481: maturation of 5S rRNA4.05E-04
23GO:0006659: phosphatidylserine biosynthetic process4.05E-04
24GO:0043686: co-translational protein modification4.05E-04
25GO:0034337: RNA folding4.05E-04
26GO:2000025: regulation of leaf formation4.05E-04
27GO:0000476: maturation of 4.5S rRNA4.05E-04
28GO:0009443: pyridoxal 5'-phosphate salvage4.05E-04
29GO:0000967: rRNA 5'-end processing4.05E-04
30GO:0031426: polycistronic mRNA processing4.05E-04
31GO:0015671: oxygen transport4.05E-04
32GO:2000070: regulation of response to water deprivation4.71E-04
33GO:0032544: plastid translation5.75E-04
34GO:0019432: triglyceride biosynthetic process6.89E-04
35GO:1900865: chloroplast RNA modification8.13E-04
36GO:0090342: regulation of cell aging8.76E-04
37GO:1900033: negative regulation of trichome patterning8.76E-04
38GO:0006568: tryptophan metabolic process8.76E-04
39GO:0015804: neutral amino acid transport8.76E-04
40GO:0051262: protein tetramerization8.76E-04
41GO:0034470: ncRNA processing8.76E-04
42GO:0006739: NADP metabolic process8.76E-04
43GO:1900871: chloroplast mRNA modification8.76E-04
44GO:0030187: melatonin biosynthetic process8.76E-04
45GO:0018026: peptidyl-lysine monomethylation8.76E-04
46GO:0034755: iron ion transmembrane transport8.76E-04
47GO:0000256: allantoin catabolic process8.76E-04
48GO:0006423: cysteinyl-tRNA aminoacylation8.76E-04
49GO:0006435: threonyl-tRNA aminoacylation8.76E-04
50GO:0006782: protoporphyrinogen IX biosynthetic process9.46E-04
51GO:0010027: thylakoid membrane organization1.09E-03
52GO:0009684: indoleacetic acid biosynthetic process1.09E-03
53GO:2000012: regulation of auxin polar transport1.41E-03
54GO:0051604: protein maturation1.42E-03
55GO:0001578: microtubule bundle formation1.42E-03
56GO:0045493: xylan catabolic process1.42E-03
57GO:0033591: response to L-ascorbic acid1.42E-03
58GO:0010136: ureide catabolic process1.42E-03
59GO:0009405: pathogenesis1.42E-03
60GO:0080055: low-affinity nitrate transport1.42E-03
61GO:0000162: tryptophan biosynthetic process1.99E-03
62GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.06E-03
63GO:0010371: regulation of gibberellin biosynthetic process2.06E-03
64GO:0006166: purine ribonucleoside salvage2.06E-03
65GO:0009102: biotin biosynthetic process2.06E-03
66GO:0010239: chloroplast mRNA processing2.06E-03
67GO:0009052: pentose-phosphate shunt, non-oxidative branch2.06E-03
68GO:0009647: skotomorphogenesis2.06E-03
69GO:0008615: pyridoxine biosynthetic process2.06E-03
70GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.06E-03
71GO:0006424: glutamyl-tRNA aminoacylation2.06E-03
72GO:0006145: purine nucleobase catabolic process2.06E-03
73GO:0046739: transport of virus in multicellular host2.06E-03
74GO:0006168: adenine salvage2.06E-03
75GO:0006413: translational initiation2.58E-03
76GO:0048511: rhythmic process2.67E-03
77GO:0048629: trichome patterning2.76E-03
78GO:0010109: regulation of photosynthesis2.76E-03
79GO:0051322: anaphase2.76E-03
80GO:0009765: photosynthesis, light harvesting2.76E-03
81GO:0022622: root system development2.76E-03
82GO:0007020: microtubule nucleation2.76E-03
83GO:0006734: NADH metabolic process2.76E-03
84GO:0031365: N-terminal protein amino acid modification3.54E-03
85GO:0016123: xanthophyll biosynthetic process3.54E-03
86GO:0044209: AMP salvage3.54E-03
87GO:0080110: sporopollenin biosynthetic process3.54E-03
88GO:0046785: microtubule polymerization3.54E-03
89GO:0032543: mitochondrial translation3.54E-03
90GO:0016120: carotene biosynthetic process3.54E-03
91GO:0046855: inositol phosphate dephosphorylation4.38E-03
92GO:0042549: photosystem II stabilization4.38E-03
93GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.38E-03
94GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.38E-03
95GO:0009958: positive gravitropism4.38E-03
96GO:0016554: cytidine to uridine editing4.38E-03
97GO:0048831: regulation of shoot system development4.38E-03
98GO:0010190: cytochrome b6f complex assembly4.38E-03
99GO:0032973: amino acid export4.38E-03
100GO:0009791: post-embryonic development5.06E-03
101GO:1901259: chloroplast rRNA processing5.27E-03
102GO:0030488: tRNA methylation5.27E-03
103GO:0010310: regulation of hydrogen peroxide metabolic process5.27E-03
104GO:0009955: adaxial/abaxial pattern specification5.27E-03
105GO:0042372: phylloquinone biosynthetic process5.27E-03
106GO:0034389: lipid particle organization5.27E-03
107GO:0048280: vesicle fusion with Golgi apparatus5.27E-03
108GO:0009658: chloroplast organization5.60E-03
109GO:0016032: viral process5.79E-03
110GO:0032880: regulation of protein localization6.23E-03
111GO:0009395: phospholipid catabolic process6.23E-03
112GO:0048528: post-embryonic root development6.23E-03
113GO:0043090: amino acid import6.23E-03
114GO:0010196: nonphotochemical quenching6.23E-03
115GO:0032508: DNA duplex unwinding7.25E-03
116GO:0000105: histidine biosynthetic process7.25E-03
117GO:0006605: protein targeting7.25E-03
118GO:0010078: maintenance of root meristem identity7.25E-03
119GO:0043562: cellular response to nitrogen levels8.32E-03
120GO:0022900: electron transport chain8.32E-03
121GO:0015996: chlorophyll catabolic process8.32E-03
122GO:0007186: G-protein coupled receptor signaling pathway8.32E-03
123GO:0015780: nucleotide-sugar transport9.45E-03
124GO:0010206: photosystem II repair9.45E-03
125GO:0080144: amino acid homeostasis9.45E-03
126GO:0048507: meristem development9.45E-03
127GO:0006783: heme biosynthetic process9.45E-03
128GO:0016311: dephosphorylation9.75E-03
129GO:0071577: zinc II ion transmembrane transport1.06E-02
130GO:0043067: regulation of programmed cell death1.06E-02
131GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
132GO:0045036: protein targeting to chloroplast1.19E-02
133GO:0006949: syncytium formation1.19E-02
134GO:0010629: negative regulation of gene expression1.19E-02
135GO:0048527: lateral root development1.19E-02
136GO:0006896: Golgi to vacuole transport1.19E-02
137GO:0006535: cysteine biosynthetic process from serine1.19E-02
138GO:0000272: polysaccharide catabolic process1.31E-02
139GO:0006415: translational termination1.31E-02
140GO:0008285: negative regulation of cell proliferation1.31E-02
141GO:1903507: negative regulation of nucleic acid-templated transcription1.31E-02
142GO:0006879: cellular iron ion homeostasis1.31E-02
143GO:0006790: sulfur compound metabolic process1.45E-02
144GO:0016024: CDP-diacylglycerol biosynthetic process1.45E-02
145GO:0045037: protein import into chloroplast stroma1.45E-02
146GO:0007166: cell surface receptor signaling pathway1.55E-02
147GO:0006631: fatty acid metabolic process1.55E-02
148GO:0010588: cotyledon vascular tissue pattern formation1.58E-02
149GO:0009640: photomorphogenesis1.69E-02
150GO:0009266: response to temperature stimulus1.73E-02
151GO:0048467: gynoecium development1.73E-02
152GO:0010143: cutin biosynthetic process1.73E-02
153GO:0006541: glutamine metabolic process1.73E-02
154GO:0046854: phosphatidylinositol phosphorylation1.87E-02
155GO:0019853: L-ascorbic acid biosynthetic process1.87E-02
156GO:0009833: plant-type primary cell wall biogenesis2.02E-02
157GO:0006071: glycerol metabolic process2.02E-02
158GO:0042753: positive regulation of circadian rhythm2.02E-02
159GO:0006289: nucleotide-excision repair2.18E-02
160GO:0019344: cysteine biosynthetic process2.18E-02
161GO:0007010: cytoskeleton organization2.18E-02
162GO:0010073: meristem maintenance2.33E-02
163GO:0006418: tRNA aminoacylation for protein translation2.33E-02
164GO:0043622: cortical microtubule organization2.33E-02
165GO:0003333: amino acid transmembrane transport2.50E-02
166GO:0061077: chaperone-mediated protein folding2.50E-02
167GO:0031348: negative regulation of defense response2.66E-02
168GO:0010017: red or far-red light signaling pathway2.66E-02
169GO:2000022: regulation of jasmonic acid mediated signaling pathway2.66E-02
170GO:0048366: leaf development2.80E-02
171GO:0010227: floral organ abscission2.83E-02
172GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.83E-02
173GO:0009306: protein secretion3.01E-02
174GO:0010214: seed coat development3.01E-02
175GO:0010584: pollen exine formation3.01E-02
176GO:0016117: carotenoid biosynthetic process3.19E-02
177GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.19E-02
178GO:0008284: positive regulation of cell proliferation3.19E-02
179GO:0042147: retrograde transport, endosome to Golgi3.19E-02
180GO:0000413: protein peptidyl-prolyl isomerization3.37E-02
181GO:0010087: phloem or xylem histogenesis3.37E-02
182GO:0048653: anther development3.37E-02
183GO:0000271: polysaccharide biosynthetic process3.37E-02
184GO:0080022: primary root development3.37E-02
185GO:0015979: photosynthesis3.52E-02
186GO:0010197: polar nucleus fusion3.55E-02
187GO:0010182: sugar mediated signaling pathway3.55E-02
188GO:0045489: pectin biosynthetic process3.55E-02
189GO:0007018: microtubule-based movement3.74E-02
190GO:0042752: regulation of circadian rhythm3.74E-02
191GO:0009646: response to absence of light3.74E-02
192GO:0008654: phospholipid biosynthetic process3.93E-02
193GO:0009851: auxin biosynthetic process3.93E-02
194GO:0006623: protein targeting to vacuole3.93E-02
195GO:0048825: cotyledon development3.93E-02
196GO:0000302: response to reactive oxygen species4.12E-02
197GO:0006891: intra-Golgi vesicle-mediated transport4.12E-02
198GO:0010090: trichome morphogenesis4.52E-02
199GO:1901657: glycosyl compound metabolic process4.52E-02
200GO:0009828: plant-type cell wall loosening4.73E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
3GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
4GO:0004076: biotin synthase activity0.00E+00
5GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
6GO:0043136: glycerol-3-phosphatase activity0.00E+00
7GO:0000121: glycerol-1-phosphatase activity0.00E+00
8GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
9GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
10GO:0043864: indoleacetamide hydrolase activity0.00E+00
11GO:0050613: delta14-sterol reductase activity0.00E+00
12GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
13GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
14GO:0045435: lycopene epsilon cyclase activity0.00E+00
15GO:0004822: isoleucine-tRNA ligase activity0.00E+00
16GO:0016851: magnesium chelatase activity5.54E-05
17GO:0005528: FK506 binding2.06E-04
18GO:0052856: NADHX epimerase activity4.05E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.05E-04
20GO:0052857: NADPHX epimerase activity4.05E-04
21GO:0010347: L-galactose-1-phosphate phosphatase activity4.05E-04
22GO:0005344: oxygen transporter activity4.05E-04
23GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.05E-04
24GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.05E-04
25GO:0005227: calcium activated cation channel activity4.05E-04
26GO:0004425: indole-3-glycerol-phosphate synthase activity4.05E-04
27GO:0004733: pyridoxamine-phosphate oxidase activity4.05E-04
28GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.05E-04
29GO:0004856: xylulokinase activity4.05E-04
30GO:0005080: protein kinase C binding4.05E-04
31GO:0004853: uroporphyrinogen decarboxylase activity4.05E-04
32GO:0042586: peptide deformylase activity4.05E-04
33GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.87E-04
34GO:0015172: acidic amino acid transmembrane transporter activity8.76E-04
35GO:0050017: L-3-cyanoalanine synthase activity8.76E-04
36GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.76E-04
37GO:0009977: proton motive force dependent protein transmembrane transporter activity8.76E-04
38GO:0052832: inositol monophosphate 3-phosphatase activity8.76E-04
39GO:0004817: cysteine-tRNA ligase activity8.76E-04
40GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity8.76E-04
41GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.76E-04
42GO:0016630: protochlorophyllide reductase activity8.76E-04
43GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity8.76E-04
44GO:0004829: threonine-tRNA ligase activity8.76E-04
45GO:0008934: inositol monophosphate 1-phosphatase activity8.76E-04
46GO:0052833: inositol monophosphate 4-phosphatase activity8.76E-04
47GO:0004512: inositol-3-phosphate synthase activity8.76E-04
48GO:0070402: NADPH binding1.42E-03
49GO:0004049: anthranilate synthase activity1.42E-03
50GO:0080054: low-affinity nitrate transmembrane transporter activity1.42E-03
51GO:0015462: ATPase-coupled protein transmembrane transporter activity1.42E-03
52GO:0005504: fatty acid binding1.42E-03
53GO:0002161: aminoacyl-tRNA editing activity1.42E-03
54GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.42E-03
55GO:0004848: ureidoglycolate hydrolase activity1.42E-03
56GO:0004751: ribose-5-phosphate isomerase activity1.42E-03
57GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.06E-03
58GO:0015175: neutral amino acid transmembrane transporter activity2.06E-03
59GO:0048027: mRNA 5'-UTR binding2.06E-03
60GO:0003999: adenine phosphoribosyltransferase activity2.06E-03
61GO:0016149: translation release factor activity, codon specific2.06E-03
62GO:0003993: acid phosphatase activity2.17E-03
63GO:0046556: alpha-L-arabinofuranosidase activity2.76E-03
64GO:0016279: protein-lysine N-methyltransferase activity2.76E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity2.76E-03
66GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.76E-03
67GO:0070628: proteasome binding2.76E-03
68GO:0045430: chalcone isomerase activity2.76E-03
69GO:0009044: xylan 1,4-beta-xylosidase activity2.76E-03
70GO:0008017: microtubule binding3.08E-03
71GO:0016846: carbon-sulfur lyase activity3.54E-03
72GO:0016773: phosphotransferase activity, alcohol group as acceptor3.54E-03
73GO:0004040: amidase activity3.54E-03
74GO:0003743: translation initiation factor activity3.65E-03
75GO:0042578: phosphoric ester hydrolase activity4.38E-03
76GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.38E-03
77GO:0008080: N-acetyltransferase activity4.38E-03
78GO:0031593: polyubiquitin binding4.38E-03
79GO:0016208: AMP binding4.38E-03
80GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.38E-03
81GO:0102229: amylopectin maltohydrolase activity4.38E-03
82GO:0009927: histidine phosphotransfer kinase activity5.27E-03
83GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.27E-03
84GO:0004124: cysteine synthase activity5.27E-03
85GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.27E-03
86GO:0016832: aldehyde-lyase activity5.27E-03
87GO:0016161: beta-amylase activity5.27E-03
88GO:0004144: diacylglycerol O-acyltransferase activity5.27E-03
89GO:0005261: cation channel activity5.27E-03
90GO:0005338: nucleotide-sugar transmembrane transporter activity6.23E-03
91GO:0043022: ribosome binding7.25E-03
92GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
93GO:0008173: RNA methyltransferase activity8.32E-03
94GO:0003747: translation release factor activity9.45E-03
95GO:0008236: serine-type peptidase activity9.75E-03
96GO:0005381: iron ion transmembrane transporter activity1.06E-02
97GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.19E-02
98GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.20E-02
99GO:0047372: acylglycerol lipase activity1.31E-02
100GO:0000049: tRNA binding1.45E-02
101GO:0008083: growth factor activity1.73E-02
102GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.73E-02
103GO:0051537: 2 iron, 2 sulfur cluster binding1.82E-02
104GO:0035091: phosphatidylinositol binding1.82E-02
105GO:0016491: oxidoreductase activity2.11E-02
106GO:0005385: zinc ion transmembrane transporter activity2.18E-02
107GO:0043130: ubiquitin binding2.18E-02
108GO:0003714: transcription corepressor activity2.18E-02
109GO:0008324: cation transmembrane transporter activity2.33E-02
110GO:0016788: hydrolase activity, acting on ester bonds2.33E-02
111GO:0005525: GTP binding2.44E-02
112GO:0003777: microtubule motor activity2.52E-02
113GO:0015171: amino acid transmembrane transporter activity2.52E-02
114GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.66E-02
115GO:0016760: cellulose synthase (UDP-forming) activity2.83E-02
116GO:0030570: pectate lyase activity2.83E-02
117GO:0022857: transmembrane transporter activity3.05E-02
118GO:0004812: aminoacyl-tRNA ligase activity3.19E-02
119GO:0050662: coenzyme binding3.74E-02
120GO:0010181: FMN binding3.74E-02
121GO:0003723: RNA binding3.80E-02
122GO:0048038: quinone binding4.12E-02
123GO:0030170: pyridoxal phosphate binding4.49E-02
124GO:0000156: phosphorelay response regulator activity4.52E-02
125GO:0016759: cellulose synthase activity4.73E-02
126GO:0003684: damaged DNA binding4.73E-02
127GO:0016791: phosphatase activity4.73E-02
128GO:0008237: metallopeptidase activity4.93E-02
129GO:0008483: transaminase activity4.93E-02
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Gene type



Gene DE type