Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G35340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
2GO:0009606: tropism0.00E+00
3GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:1905177: tracheary element differentiation0.00E+00
6GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
7GO:0015843: methylammonium transport0.00E+00
8GO:0031222: arabinan catabolic process0.00E+00
9GO:0070979: protein K11-linked ubiquitination0.00E+00
10GO:1905421: regulation of plant organ morphogenesis0.00E+00
11GO:0043488: regulation of mRNA stability0.00E+00
12GO:0061157: mRNA destabilization0.00E+00
13GO:0030155: regulation of cell adhesion0.00E+00
14GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
15GO:0046620: regulation of organ growth1.21E-10
16GO:0009734: auxin-activated signaling pathway3.84E-10
17GO:0009733: response to auxin1.48E-08
18GO:0040008: regulation of growth1.31E-07
19GO:0009926: auxin polar transport2.67E-06
20GO:0009658: chloroplast organization1.06E-05
21GO:0000373: Group II intron splicing1.00E-04
22GO:0051513: regulation of monopolar cell growth1.27E-04
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.00E-04
24GO:0070509: calcium ion import6.58E-04
25GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.58E-04
26GO:0010480: microsporocyte differentiation6.58E-04
27GO:0042371: vitamin K biosynthetic process6.58E-04
28GO:0006436: tryptophanyl-tRNA aminoacylation6.58E-04
29GO:0034080: CENP-A containing nucleosome assembly6.58E-04
30GO:0000066: mitochondrial ornithine transport6.58E-04
31GO:0051418: microtubule nucleation by microtubule organizing center6.58E-04
32GO:0042255: ribosome assembly9.57E-04
33GO:0009657: plastid organization1.16E-03
34GO:0007389: pattern specification process1.16E-03
35GO:0071555: cell wall organization1.18E-03
36GO:0033566: gamma-tubulin complex localization1.42E-03
37GO:0018026: peptidyl-lysine monomethylation1.42E-03
38GO:0071497: cellular response to freezing1.42E-03
39GO:1900033: negative regulation of trichome patterning1.42E-03
40GO:0006423: cysteinyl-tRNA aminoacylation1.42E-03
41GO:0009786: regulation of asymmetric cell division1.42E-03
42GO:2000123: positive regulation of stomatal complex development1.42E-03
43GO:0006468: protein phosphorylation1.43E-03
44GO:0009638: phototropism1.65E-03
45GO:0032502: developmental process1.87E-03
46GO:0010252: auxin homeostasis2.19E-03
47GO:0006954: inflammatory response2.34E-03
48GO:0031145: anaphase-promoting complex-dependent catabolic process2.34E-03
49GO:0010623: programmed cell death involved in cell development2.34E-03
50GO:0006760: folic acid-containing compound metabolic process2.34E-03
51GO:0071398: cellular response to fatty acid2.34E-03
52GO:0007052: mitotic spindle organization2.34E-03
53GO:0048281: inflorescence morphogenesis2.34E-03
54GO:0051127: positive regulation of actin nucleation2.34E-03
55GO:2000012: regulation of auxin polar transport2.92E-03
56GO:0009767: photosynthetic electron transport chain2.92E-03
57GO:0007275: multicellular organism development3.18E-03
58GO:0010020: chloroplast fission3.30E-03
59GO:0009226: nucleotide-sugar biosynthetic process3.40E-03
60GO:0044211: CTP salvage3.40E-03
61GO:0019048: modulation by virus of host morphology or physiology3.40E-03
62GO:0090307: mitotic spindle assembly3.40E-03
63GO:0015696: ammonium transport3.40E-03
64GO:0046739: transport of virus in multicellular host3.40E-03
65GO:2000904: regulation of starch metabolic process3.40E-03
66GO:0031048: chromatin silencing by small RNA3.40E-03
67GO:0010148: transpiration3.40E-03
68GO:0043572: plastid fission3.40E-03
69GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.40E-03
70GO:0034508: centromere complex assembly3.40E-03
71GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.40E-03
72GO:0007231: osmosensory signaling pathway3.40E-03
73GO:0030071: regulation of mitotic metaphase/anaphase transition3.40E-03
74GO:0051639: actin filament network formation3.40E-03
75GO:0010306: rhamnogalacturonan II biosynthetic process3.40E-03
76GO:0070588: calcium ion transmembrane transport3.70E-03
77GO:0005975: carbohydrate metabolic process3.73E-03
78GO:0000160: phosphorelay signal transduction system4.13E-03
79GO:0009742: brassinosteroid mediated signaling pathway4.21E-03
80GO:0072488: ammonium transmembrane transport4.58E-03
81GO:2000038: regulation of stomatal complex development4.58E-03
82GO:0022622: root system development4.58E-03
83GO:0046656: folic acid biosynthetic process4.58E-03
84GO:0051567: histone H3-K9 methylation4.58E-03
85GO:0010508: positive regulation of autophagy4.58E-03
86GO:0044206: UMP salvage4.58E-03
87GO:1901141: regulation of lignin biosynthetic process4.58E-03
88GO:0005992: trehalose biosynthetic process4.58E-03
89GO:0048629: trichome patterning4.58E-03
90GO:0051764: actin crosslink formation4.58E-03
91GO:0009944: polarity specification of adaxial/abaxial axis4.58E-03
92GO:0033500: carbohydrate homeostasis4.58E-03
93GO:0006418: tRNA aminoacylation for protein translation5.06E-03
94GO:0010375: stomatal complex patterning5.89E-03
95GO:0009904: chloroplast accumulation movement5.89E-03
96GO:0010236: plastoquinone biosynthetic process5.89E-03
97GO:0009107: lipoate biosynthetic process5.89E-03
98GO:1902183: regulation of shoot apical meristem development5.89E-03
99GO:0016123: xanthophyll biosynthetic process5.89E-03
100GO:0010438: cellular response to sulfur starvation5.89E-03
101GO:0010158: abaxial cell fate specification5.89E-03
102GO:0032876: negative regulation of DNA endoreduplication5.89E-03
103GO:0031348: negative regulation of defense response6.11E-03
104GO:0010082: regulation of root meristem growth6.67E-03
105GO:0009686: gibberellin biosynthetic process6.67E-03
106GO:0042793: transcription from plastid promoter7.31E-03
107GO:0010315: auxin efflux7.31E-03
108GO:0016458: gene silencing7.31E-03
109GO:0006206: pyrimidine nucleobase metabolic process7.31E-03
110GO:0032973: amino acid export7.31E-03
111GO:0018258: protein O-linked glycosylation via hydroxyproline7.31E-03
112GO:0010405: arabinogalactan protein metabolic process7.31E-03
113GO:0009959: negative gravitropism7.31E-03
114GO:0006655: phosphatidylglycerol biosynthetic process7.31E-03
115GO:0008033: tRNA processing8.53E-03
116GO:0042372: phylloquinone biosynthetic process8.84E-03
117GO:0009942: longitudinal axis specification8.84E-03
118GO:0046654: tetrahydrofolate biosynthetic process8.84E-03
119GO:0009903: chloroplast avoidance movement8.84E-03
120GO:0030488: tRNA methylation8.84E-03
121GO:0080086: stamen filament development8.84E-03
122GO:0009958: positive gravitropism9.20E-03
123GO:0070370: cellular heat acclimation1.05E-02
124GO:0010050: vegetative phase change1.05E-02
125GO:0048437: floral organ development1.05E-02
126GO:0030307: positive regulation of cell growth1.05E-02
127GO:0010103: stomatal complex morphogenesis1.05E-02
128GO:0032880: regulation of protein localization1.05E-02
129GO:0010161: red light signaling pathway1.05E-02
130GO:0009610: response to symbiotic fungus1.05E-02
131GO:0048528: post-embryonic root development1.05E-02
132GO:0009772: photosynthetic electron transport in photosystem II1.05E-02
133GO:0043090: amino acid import1.05E-02
134GO:0009736: cytokinin-activated signaling pathway1.07E-02
135GO:0007166: cell surface receptor signaling pathway1.09E-02
136GO:0009850: auxin metabolic process1.22E-02
137GO:0009704: de-etiolation1.22E-02
138GO:0032875: regulation of DNA endoreduplication1.22E-02
139GO:0006353: DNA-templated transcription, termination1.22E-02
140GO:0048766: root hair initiation1.22E-02
141GO:0070413: trehalose metabolism in response to stress1.22E-02
142GO:0010583: response to cyclopentenone1.22E-02
143GO:0010439: regulation of glucosinolate biosynthetic process1.22E-02
144GO:0009828: plant-type cell wall loosening1.39E-02
145GO:0009827: plant-type cell wall modification1.41E-02
146GO:0010100: negative regulation of photomorphogenesis1.41E-02
147GO:0010497: plasmodesmata-mediated intercellular transport1.41E-02
148GO:0032544: plastid translation1.41E-02
149GO:0010099: regulation of photomorphogenesis1.41E-02
150GO:0006002: fructose 6-phosphate metabolic process1.41E-02
151GO:0001558: regulation of cell growth1.41E-02
152GO:0009740: gibberellic acid mediated signaling pathway1.55E-02
153GO:0051607: defense response to virus1.56E-02
154GO:0080144: amino acid homeostasis1.60E-02
155GO:2000024: regulation of leaf development1.60E-02
156GO:0006783: heme biosynthetic process1.60E-02
157GO:0000902: cell morphogenesis1.60E-02
158GO:0009051: pentose-phosphate shunt, oxidative branch1.60E-02
159GO:0010027: thylakoid membrane organization1.66E-02
160GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.80E-02
161GO:0031425: chloroplast RNA processing1.80E-02
162GO:0071577: zinc II ion transmembrane transport1.80E-02
163GO:0042761: very long-chain fatty acid biosynthetic process1.80E-02
164GO:0006535: cysteine biosynthetic process from serine2.01E-02
165GO:0030422: production of siRNA involved in RNA interference2.01E-02
166GO:0048829: root cap development2.01E-02
167GO:0009641: shade avoidance2.01E-02
168GO:0006949: syncytium formation2.01E-02
169GO:0006259: DNA metabolic process2.01E-02
170GO:0009299: mRNA transcription2.01E-02
171GO:0006265: DNA topological change2.23E-02
172GO:0009089: lysine biosynthetic process via diaminopimelate2.23E-02
173GO:0006816: calcium ion transport2.23E-02
174GO:0009773: photosynthetic electron transport in photosystem I2.23E-02
175GO:0009682: induced systemic resistance2.23E-02
176GO:0006415: translational termination2.23E-02
177GO:0048229: gametophyte development2.23E-02
178GO:0010015: root morphogenesis2.23E-02
179GO:0080167: response to karrikin2.37E-02
180GO:0006811: ion transport2.39E-02
181GO:0016024: CDP-diacylglycerol biosynthetic process2.46E-02
182GO:0045037: protein import into chloroplast stroma2.46E-02
183GO:0010582: floral meristem determinacy2.46E-02
184GO:0010628: positive regulation of gene expression2.69E-02
185GO:0006006: glucose metabolic process2.69E-02
186GO:0009785: blue light signaling pathway2.69E-02
187GO:0009691: cytokinin biosynthetic process2.69E-02
188GO:0030036: actin cytoskeleton organization2.69E-02
189GO:0010075: regulation of meristem growth2.69E-02
190GO:0009725: response to hormone2.69E-02
191GO:0010207: photosystem II assembly2.93E-02
192GO:0009934: regulation of meristem structural organization2.93E-02
193GO:0006839: mitochondrial transport3.14E-02
194GO:0090351: seedling development3.18E-02
195GO:0006631: fatty acid metabolic process3.27E-02
196GO:0007623: circadian rhythm3.34E-02
197GO:0010025: wax biosynthetic process3.44E-02
198GO:0009833: plant-type primary cell wall biogenesis3.44E-02
199GO:0006071: glycerol metabolic process3.44E-02
200GO:0051017: actin filament bundle assembly3.70E-02
201GO:0030150: protein import into mitochondrial matrix3.70E-02
202GO:0010187: negative regulation of seed germination3.70E-02
203GO:0019344: cysteine biosynthetic process3.70E-02
204GO:0006825: copper ion transport3.97E-02
205GO:0051302: regulation of cell division3.97E-02
206GO:0009965: leaf morphogenesis3.98E-02
207GO:0006855: drug transmembrane transport4.13E-02
208GO:0006306: DNA methylation4.25E-02
209GO:0016998: cell wall macromolecule catabolic process4.25E-02
210GO:0006334: nucleosome assembly4.25E-02
211GO:0009664: plant-type cell wall organization4.44E-02
212GO:0048364: root development4.46E-02
213GO:0006730: one-carbon metabolic process4.53E-02
214GO:0009693: ethylene biosynthetic process4.81E-02
215GO:0001944: vasculature development4.81E-02
216GO:0009625: response to insect4.81E-02
217GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.81E-02
218GO:0051603: proteolysis involved in cellular protein catabolic process4.93E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0019199: transmembrane receptor protein kinase activity2.17E-04
4GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.58E-04
5GO:0005290: L-histidine transmembrane transporter activity6.58E-04
6GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.58E-04
7GO:0004008: copper-exporting ATPase activity6.58E-04
8GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.58E-04
9GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.58E-04
10GO:0004830: tryptophan-tRNA ligase activity6.58E-04
11GO:0010285: L,L-diaminopimelate aminotransferase activity6.58E-04
12GO:0052381: tRNA dimethylallyltransferase activity6.58E-04
13GO:0010313: phytochrome binding6.58E-04
14GO:0050139: nicotinate-N-glucosyltransferase activity6.58E-04
15GO:0051777: ent-kaurenoate oxidase activity6.58E-04
16GO:0003727: single-stranded RNA binding9.73E-04
17GO:0004150: dihydroneopterin aldolase activity1.42E-03
18GO:0008805: carbon-monoxide oxygenase activity1.42E-03
19GO:0000064: L-ornithine transmembrane transporter activity1.42E-03
20GO:0015929: hexosaminidase activity1.42E-03
21GO:0004563: beta-N-acetylhexosaminidase activity1.42E-03
22GO:0050017: L-3-cyanoalanine synthase activity1.42E-03
23GO:0017118: lipoyltransferase activity1.42E-03
24GO:0043425: bHLH transcription factor binding1.42E-03
25GO:0016415: octanoyltransferase activity1.42E-03
26GO:0102083: 7,8-dihydromonapterin aldolase activity1.42E-03
27GO:0004817: cysteine-tRNA ligase activity1.42E-03
28GO:0009672: auxin:proton symporter activity1.65E-03
29GO:0004805: trehalose-phosphatase activity1.93E-03
30GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.97E-03
31GO:0000156: phosphorelay response regulator activity2.03E-03
32GO:0070330: aromatase activity2.34E-03
33GO:0004557: alpha-galactosidase activity2.34E-03
34GO:0052692: raffinose alpha-galactosidase activity2.34E-03
35GO:0070180: large ribosomal subunit rRNA binding2.34E-03
36GO:0010329: auxin efflux transmembrane transporter activity2.92E-03
37GO:0005262: calcium channel activity2.92E-03
38GO:0017172: cysteine dioxygenase activity3.40E-03
39GO:0015181: arginine transmembrane transporter activity3.40E-03
40GO:0035197: siRNA binding3.40E-03
41GO:0001872: (1->3)-beta-D-glucan binding3.40E-03
42GO:0015189: L-lysine transmembrane transporter activity3.40E-03
43GO:0043015: gamma-tubulin binding4.58E-03
44GO:0042277: peptide binding4.58E-03
45GO:0046556: alpha-L-arabinofuranosidase activity4.58E-03
46GO:0004659: prenyltransferase activity4.58E-03
47GO:0016279: protein-lysine N-methyltransferase activity4.58E-03
48GO:0031418: L-ascorbic acid binding4.58E-03
49GO:0004845: uracil phosphoribosyltransferase activity4.58E-03
50GO:0004345: glucose-6-phosphate dehydrogenase activity4.58E-03
51GO:0080032: methyl jasmonate esterase activity4.58E-03
52GO:0004523: RNA-DNA hybrid ribonuclease activity5.89E-03
53GO:0018685: alkane 1-monooxygenase activity5.89E-03
54GO:0016829: lyase activity6.12E-03
55GO:0042578: phosphoric ester hydrolase activity7.31E-03
56GO:0008519: ammonium transmembrane transporter activity7.31E-03
57GO:0004605: phosphatidate cytidylyltransferase activity7.31E-03
58GO:0080030: methyl indole-3-acetate esterase activity7.31E-03
59GO:1990714: hydroxyproline O-galactosyltransferase activity7.31E-03
60GO:0004812: aminoacyl-tRNA ligase activity7.88E-03
61GO:0043621: protein self-association8.05E-03
62GO:0004849: uridine kinase activity8.84E-03
63GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity8.84E-03
64GO:0003730: mRNA 3'-UTR binding8.84E-03
65GO:0004656: procollagen-proline 4-dioxygenase activity8.84E-03
66GO:0004124: cysteine synthase activity8.84E-03
67GO:0008195: phosphatidate phosphatase activity8.84E-03
68GO:0016301: kinase activity9.00E-03
69GO:0004674: protein serine/threonine kinase activity1.03E-02
70GO:0019899: enzyme binding1.05E-02
71GO:0003872: 6-phosphofructokinase activity1.05E-02
72GO:0005215: transporter activity1.05E-02
73GO:0043022: ribosome binding1.22E-02
74GO:0016759: cellulose synthase activity1.39E-02
75GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.41E-02
76GO:0005375: copper ion transmembrane transporter activity1.41E-02
77GO:0004650: polygalacturonase activity1.49E-02
78GO:0008889: glycerophosphodiester phosphodiesterase activity1.60E-02
79GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.60E-02
80GO:0003747: translation release factor activity1.60E-02
81GO:0004672: protein kinase activity2.00E-02
82GO:0004713: protein tyrosine kinase activity2.01E-02
83GO:0005089: Rho guanyl-nucleotide exchange factor activity2.23E-02
84GO:0008327: methyl-CpG binding2.23E-02
85GO:0015238: drug transmembrane transporter activity2.28E-02
86GO:0000976: transcription regulatory region sequence-specific DNA binding2.46E-02
87GO:0004521: endoribonuclease activity2.46E-02
88GO:0004565: beta-galactosidase activity2.69E-02
89GO:0004022: alcohol dehydrogenase (NAD) activity2.69E-02
90GO:0015266: protein channel activity2.69E-02
91GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.69E-02
92GO:0004089: carbonate dehydratase activity2.69E-02
93GO:0031072: heat shock protein binding2.69E-02
94GO:0009982: pseudouridine synthase activity2.69E-02
95GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.93E-02
96GO:0008083: growth factor activity2.93E-02
97GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.10E-02
98GO:0042393: histone binding3.14E-02
99GO:0004185: serine-type carboxypeptidase activity3.55E-02
100GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding3.62E-02
101GO:0005385: zinc ion transmembrane transporter activity3.70E-02
102GO:0004857: enzyme inhibitor activity3.70E-02
103GO:0005345: purine nucleobase transmembrane transporter activity3.97E-02
104GO:0008324: cation transmembrane transporter activity3.97E-02
105GO:0035251: UDP-glucosyltransferase activity4.25E-02
106GO:0033612: receptor serine/threonine kinase binding4.25E-02
107GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.53E-02
108GO:0030570: pectate lyase activity4.81E-02
109GO:0016760: cellulose synthase (UDP-forming) activity4.81E-02
110GO:0003690: double-stranded DNA binding4.93E-02
111GO:0044212: transcription regulatory region DNA binding4.99E-02
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Gene type



Gene DE type