Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G33240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0042794: rRNA transcription from plastid promoter0.00E+00
3GO:0044154: histone H3-K14 acetylation0.00E+00
4GO:0045014: negative regulation of transcription by glucose0.00E+00
5GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:1901698: response to nitrogen compound0.00E+00
8GO:0009606: tropism0.00E+00
9GO:0090322: regulation of superoxide metabolic process0.00E+00
10GO:0000372: Group I intron splicing0.00E+00
11GO:1903224: regulation of endodermal cell differentiation0.00E+00
12GO:0035884: arabinan biosynthetic process0.00E+00
13GO:0043972: histone H3-K23 acetylation0.00E+00
14GO:0080127: fruit septum development0.00E+00
15GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
16GO:0097164: ammonium ion metabolic process0.00E+00
17GO:0045184: establishment of protein localization0.00E+00
18GO:0010480: microsporocyte differentiation0.00E+00
19GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
20GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.50E-06
21GO:0042793: transcription from plastid promoter9.99E-06
22GO:0048437: floral organ development2.63E-05
23GO:0009734: auxin-activated signaling pathway2.87E-05
24GO:0046620: regulation of organ growth3.86E-05
25GO:0009658: chloroplast organization2.00E-04
26GO:0009416: response to light stimulus2.78E-04
27GO:0009733: response to auxin3.09E-04
28GO:0009913: epidermal cell differentiation3.68E-04
29GO:0010342: endosperm cellularization5.72E-04
30GO:0034757: negative regulation of iron ion transport5.72E-04
31GO:0034970: histone H3-R2 methylation5.72E-04
32GO:0042659: regulation of cell fate specification5.72E-04
33GO:0034972: histone H3-R26 methylation5.72E-04
34GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.72E-04
35GO:0043971: histone H3-K18 acetylation5.72E-04
36GO:0090558: plant epidermis development5.72E-04
37GO:0010063: positive regulation of trichoblast fate specification5.72E-04
38GO:1903866: palisade mesophyll development5.72E-04
39GO:0034971: histone H3-R17 methylation5.72E-04
40GO:0033206: meiotic cytokinesis5.72E-04
41GO:0035987: endodermal cell differentiation5.72E-04
42GO:0006436: tryptophanyl-tRNA aminoacylation5.72E-04
43GO:0006468: protein phosphorylation5.88E-04
44GO:0006955: immune response6.28E-04
45GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.28E-04
46GO:0042255: ribosome assembly7.81E-04
47GO:0007389: pattern specification process9.50E-04
48GO:0010305: leaf vascular tissue pattern formation1.00E-03
49GO:0009926: auxin polar transport1.02E-03
50GO:0048507: meristem development1.14E-03
51GO:0000373: Group II intron splicing1.14E-03
52GO:0000902: cell morphogenesis1.14E-03
53GO:2000123: positive regulation of stomatal complex development1.23E-03
54GO:0010254: nectary development1.23E-03
55GO:1902326: positive regulation of chlorophyll biosynthetic process1.23E-03
56GO:0010569: regulation of double-strand break repair via homologous recombination1.23E-03
57GO:0070981: L-asparagine biosynthetic process1.23E-03
58GO:0010271: regulation of chlorophyll catabolic process1.23E-03
59GO:0010434: bract formation1.23E-03
60GO:0018026: peptidyl-lysine monomethylation1.23E-03
61GO:0009662: etioplast organization1.23E-03
62GO:1900033: negative regulation of trichome patterning1.23E-03
63GO:0048439: flower morphogenesis1.23E-03
64GO:1904143: positive regulation of carotenoid biosynthetic process1.23E-03
65GO:0080009: mRNA methylation1.23E-03
66GO:0006529: asparagine biosynthetic process1.23E-03
67GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.23E-03
68GO:0032502: developmental process1.42E-03
69GO:0030422: production of siRNA involved in RNA interference1.56E-03
70GO:0009451: RNA modification1.59E-03
71GO:0010252: auxin homeostasis1.67E-03
72GO:0048229: gametophyte development1.81E-03
73GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.02E-03
74GO:0090708: specification of plant organ axis polarity2.02E-03
75GO:0080117: secondary growth2.02E-03
76GO:0044210: 'de novo' CTP biosynthetic process2.02E-03
77GO:0090391: granum assembly2.02E-03
78GO:0010589: leaf proximal/distal pattern formation2.02E-03
79GO:0042780: tRNA 3'-end processing2.02E-03
80GO:0071705: nitrogen compound transport2.02E-03
81GO:0001578: microtubule bundle formation2.02E-03
82GO:0009954: proximal/distal pattern formation2.02E-03
83GO:0010582: floral meristem determinacy2.07E-03
84GO:0010075: regulation of meristem growth2.36E-03
85GO:0009934: regulation of meristem structural organization2.67E-03
86GO:0010071: root meristem specification2.93E-03
87GO:0051513: regulation of monopolar cell growth2.93E-03
88GO:0010239: chloroplast mRNA processing2.93E-03
89GO:0009800: cinnamic acid biosynthetic process2.93E-03
90GO:0044211: CTP salvage2.93E-03
91GO:0019048: modulation by virus of host morphology or physiology2.93E-03
92GO:0046739: transport of virus in multicellular host2.93E-03
93GO:2000904: regulation of starch metabolic process2.93E-03
94GO:0031048: chromatin silencing by small RNA2.93E-03
95GO:0051289: protein homotetramerization2.93E-03
96GO:1902476: chloride transmembrane transport2.93E-03
97GO:0048481: plant ovule development2.95E-03
98GO:0080188: RNA-directed DNA methylation2.99E-03
99GO:0000160: phosphorelay signal transduction system3.14E-03
100GO:0009944: polarity specification of adaxial/abaxial axis3.70E-03
101GO:1900864: mitochondrial RNA modification3.95E-03
102GO:0051322: anaphase3.95E-03
103GO:0071249: cellular response to nitrate3.95E-03
104GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.95E-03
105GO:0030104: water homeostasis3.95E-03
106GO:0000914: phragmoplast assembly3.95E-03
107GO:2000038: regulation of stomatal complex development3.95E-03
108GO:0051567: histone H3-K9 methylation3.95E-03
109GO:0044206: UMP salvage3.95E-03
110GO:0006479: protein methylation3.95E-03
111GO:0048629: trichome patterning3.95E-03
112GO:0016998: cell wall macromolecule catabolic process4.50E-03
113GO:0009790: embryo development4.96E-03
114GO:1902183: regulation of shoot apical meristem development5.07E-03
115GO:0016123: xanthophyll biosynthetic process5.07E-03
116GO:0010375: stomatal complex patterning5.07E-03
117GO:0080110: sporopollenin biosynthetic process5.07E-03
118GO:0009616: virus induced gene silencing5.07E-03
119GO:0048497: maintenance of floral organ identity5.07E-03
120GO:0010082: regulation of root meristem growth5.38E-03
121GO:0040008: regulation of growth5.97E-03
122GO:0006655: phosphatidylglycerol biosynthetic process6.29E-03
123GO:0016554: cytidine to uridine editing6.29E-03
124GO:0048831: regulation of shoot system development6.29E-03
125GO:0042176: regulation of protein catabolic process6.29E-03
126GO:0003006: developmental process involved in reproduction6.29E-03
127GO:0010315: auxin efflux6.29E-03
128GO:0006559: L-phenylalanine catabolic process6.29E-03
129GO:0006206: pyrimidine nucleobase metabolic process6.29E-03
130GO:0016458: gene silencing6.29E-03
131GO:0018258: protein O-linked glycosylation via hydroxyproline6.29E-03
132GO:0009643: photosynthetic acclimation6.29E-03
133GO:0010405: arabinogalactan protein metabolic process6.29E-03
134GO:0048653: anther development6.87E-03
135GO:0010310: regulation of hydrogen peroxide metabolic process7.60E-03
136GO:2000067: regulation of root morphogenesis7.60E-03
137GO:0071470: cellular response to osmotic stress7.60E-03
138GO:0010067: procambium histogenesis7.60E-03
139GO:0048509: regulation of meristem development7.60E-03
140GO:0030488: tRNA methylation7.60E-03
141GO:2000033: regulation of seed dormancy process7.60E-03
142GO:1901259: chloroplast rRNA processing7.60E-03
143GO:0009646: response to absence of light7.98E-03
144GO:0007018: microtubule-based movement7.98E-03
145GO:0009736: cytokinin-activated signaling pathway8.12E-03
146GO:0048825: cotyledon development8.57E-03
147GO:0006821: chloride transport9.00E-03
148GO:0035196: production of miRNAs involved in gene silencing by miRNA9.00E-03
149GO:0010103: stomatal complex morphogenesis9.00E-03
150GO:0009909: regulation of flower development9.25E-03
151GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.05E-02
152GO:0001522: pseudouridine synthesis1.05E-02
153GO:0009787: regulation of abscisic acid-activated signaling pathway1.05E-02
154GO:0030162: regulation of proteolysis1.05E-02
155GO:0006353: DNA-templated transcription, termination1.05E-02
156GO:0048766: root hair initiation1.05E-02
157GO:0055075: potassium ion homeostasis1.05E-02
158GO:0006102: isocitrate metabolic process1.05E-02
159GO:0009827: plant-type cell wall modification1.21E-02
160GO:0007186: G-protein coupled receptor signaling pathway1.21E-02
161GO:0001510: RNA methylation1.21E-02
162GO:0010497: plasmodesmata-mediated intercellular transport1.21E-02
163GO:0009657: plastid organization1.21E-02
164GO:0032544: plastid translation1.21E-02
165GO:0044030: regulation of DNA methylation1.21E-02
166GO:0010093: specification of floral organ identity1.21E-02
167GO:0000910: cytokinesis1.26E-02
168GO:0010027: thylakoid membrane organization1.33E-02
169GO:0009245: lipid A biosynthetic process1.37E-02
170GO:2000024: regulation of leaf development1.37E-02
171GO:0048589: developmental growth1.37E-02
172GO:0010029: regulation of seed germination1.41E-02
173GO:0009638: phototropism1.54E-02
174GO:0042761: very long-chain fatty acid biosynthetic process1.54E-02
175GO:2000280: regulation of root development1.54E-02
176GO:0006349: regulation of gene expression by genetic imprinting1.54E-02
177GO:1900865: chloroplast RNA modification1.54E-02
178GO:0031425: chloroplast RNA processing1.54E-02
179GO:0010048: vernalization response1.72E-02
180GO:0006535: cysteine biosynthetic process from serine1.72E-02
181GO:0048829: root cap development1.72E-02
182GO:0045036: protein targeting to chloroplast1.72E-02
183GO:0009058: biosynthetic process1.82E-02
184GO:0010015: root morphogenesis1.91E-02
185GO:0006811: ion transport1.93E-02
186GO:0006355: regulation of transcription, DNA-templated1.94E-02
187GO:0015706: nitrate transport2.11E-02
188GO:0010152: pollen maturation2.11E-02
189GO:0016024: CDP-diacylglycerol biosynthetic process2.11E-02
190GO:0045037: protein import into chloroplast stroma2.11E-02
191GO:0009767: photosynthetic electron transport chain2.31E-02
192GO:0010588: cotyledon vascular tissue pattern formation2.31E-02
193GO:0010102: lateral root morphogenesis2.31E-02
194GO:0009785: blue light signaling pathway2.31E-02
195GO:0009691: cytokinin biosynthetic process2.31E-02
196GO:0048467: gynoecium development2.51E-02
197GO:0006541: glutamine metabolic process2.51E-02
198GO:0010020: chloroplast fission2.51E-02
199GO:0006270: DNA replication initiation2.51E-02
200GO:0010223: secondary shoot formation2.51E-02
201GO:0006351: transcription, DNA-templated2.61E-02
202GO:0010167: response to nitrate2.73E-02
203GO:0016567: protein ubiquitination2.92E-02
204GO:0009739: response to gibberellin2.94E-02
205GO:0006833: water transport2.95E-02
206GO:0006071: glycerol metabolic process2.95E-02
207GO:0019344: cysteine biosynthetic process3.17E-02
208GO:0080147: root hair cell development3.17E-02
209GO:0009863: salicylic acid mediated signaling pathway3.17E-02
210GO:0010187: negative regulation of seed germination3.17E-02
211GO:2000377: regulation of reactive oxygen species metabolic process3.17E-02
212GO:0008380: RNA splicing3.18E-02
213GO:0051302: regulation of cell division3.40E-02
214GO:0006418: tRNA aminoacylation for protein translation3.40E-02
215GO:0006874: cellular calcium ion homeostasis3.40E-02
216GO:0010073: meristem maintenance3.40E-02
217GO:0042538: hyperosmotic salinity response3.59E-02
218GO:0006306: DNA methylation3.64E-02
219GO:0003333: amino acid transmembrane transport3.64E-02
220GO:0031348: negative regulation of defense response3.88E-02
221GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.13E-02
222GO:0071215: cellular response to abscisic acid stimulus4.13E-02
223GO:0009686: gibberellin biosynthetic process4.13E-02
224GO:0001944: vasculature development4.13E-02
225GO:0010227: floral organ abscission4.13E-02
226GO:0010089: xylem development4.38E-02
227GO:0010584: pollen exine formation4.38E-02
228GO:0048443: stamen development4.38E-02
229GO:0042127: regulation of cell proliferation4.38E-02
230GO:0006284: base-excision repair4.38E-02
231GO:0070417: cellular response to cold4.64E-02
232GO:0048316: seed development4.69E-02
233GO:0000226: microtubule cytoskeleton organization4.90E-02
234GO:0008033: tRNA processing4.90E-02
235GO:0010087: phloem or xylem histogenesis4.90E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0042834: peptidoglycan binding0.00E+00
3GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
4GO:0016805: dipeptidase activity4.75E-05
5GO:0004674: protein serine/threonine kinase activity6.99E-05
6GO:0004930: G-protein coupled receptor activity1.73E-04
7GO:0004016: adenylate cyclase activity5.72E-04
8GO:0016274: protein-arginine N-methyltransferase activity5.72E-04
9GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.72E-04
10GO:0004071: aspartate-ammonia ligase activity5.72E-04
11GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.72E-04
12GO:0052381: tRNA dimethylallyltransferase activity5.72E-04
13GO:0004830: tryptophan-tRNA ligase activity5.72E-04
14GO:0003723: RNA binding6.11E-04
15GO:0003727: single-stranded RNA binding7.47E-04
16GO:0004519: endonuclease activity9.89E-04
17GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.23E-03
18GO:0008805: carbon-monoxide oxygenase activity1.23E-03
19GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.23E-03
20GO:0004450: isocitrate dehydrogenase (NADP+) activity1.23E-03
21GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.23E-03
22GO:0009884: cytokinin receptor activity1.23E-03
23GO:0035241: protein-arginine omega-N monomethyltransferase activity1.23E-03
24GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.23E-03
25GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.23E-03
26GO:0009672: auxin:proton symporter activity1.34E-03
27GO:0003777: microtubule motor activity1.88E-03
28GO:0008469: histone-arginine N-methyltransferase activity2.02E-03
29GO:0004180: carboxypeptidase activity2.02E-03
30GO:0017150: tRNA dihydrouridine synthase activity2.02E-03
31GO:0045548: phenylalanine ammonia-lyase activity2.02E-03
32GO:0042781: 3'-tRNA processing endoribonuclease activity2.02E-03
33GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.02E-03
34GO:0005034: osmosensor activity2.02E-03
35GO:0016707: gibberellin 3-beta-dioxygenase activity2.02E-03
36GO:0003725: double-stranded RNA binding2.36E-03
37GO:0010329: auxin efflux transmembrane transporter activity2.36E-03
38GO:0001872: (1->3)-beta-D-glucan binding2.93E-03
39GO:0003883: CTP synthase activity2.93E-03
40GO:0035197: siRNA binding2.93E-03
41GO:0019843: rRNA binding3.91E-03
42GO:0004845: uracil phosphoribosyltransferase activity3.95E-03
43GO:0010011: auxin binding3.95E-03
44GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.95E-03
45GO:0010385: double-stranded methylated DNA binding3.95E-03
46GO:0005253: anion channel activity3.95E-03
47GO:0046556: alpha-L-arabinofuranosidase activity3.95E-03
48GO:0016279: protein-lysine N-methyltransferase activity3.95E-03
49GO:0033612: receptor serine/threonine kinase binding4.50E-03
50GO:0008725: DNA-3-methyladenine glycosylase activity5.07E-03
51GO:0004888: transmembrane signaling receptor activity5.07E-03
52GO:0043621: protein self-association6.12E-03
53GO:0003688: DNA replication origin binding6.29E-03
54GO:0004605: phosphatidate cytidylyltransferase activity6.29E-03
55GO:1990714: hydroxyproline O-galactosyltransferase activity6.29E-03
56GO:0031177: phosphopantetheine binding6.29E-03
57GO:0005247: voltage-gated chloride channel activity6.29E-03
58GO:0008017: microtubule binding6.87E-03
59GO:0004871: signal transducer activity7.22E-03
60GO:0004124: cysteine synthase activity7.60E-03
61GO:0008195: phosphatidate phosphatase activity7.60E-03
62GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.60E-03
63GO:0004849: uridine kinase activity7.60E-03
64GO:0016832: aldehyde-lyase activity7.60E-03
65GO:0000035: acyl binding7.60E-03
66GO:0019900: kinase binding7.60E-03
67GO:0003690: double-stranded DNA binding8.48E-03
68GO:0005515: protein binding9.72E-03
69GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.05E-02
70GO:0000156: phosphorelay response regulator activity1.05E-02
71GO:0004650: polygalacturonase activity1.14E-02
72GO:0008173: RNA methyltransferase activity1.21E-02
73GO:0016301: kinase activity1.24E-02
74GO:0008889: glycerophosphodiester phosphodiesterase activity1.37E-02
75GO:0000989: transcription factor activity, transcription factor binding1.37E-02
76GO:0008171: O-methyltransferase activity1.72E-02
77GO:0004673: protein histidine kinase activity1.72E-02
78GO:0005524: ATP binding1.84E-02
79GO:0005089: Rho guanyl-nucleotide exchange factor activity1.91E-02
80GO:0008559: xenobiotic-transporting ATPase activity1.91E-02
81GO:0004521: endoribonuclease activity2.11E-02
82GO:0003697: single-stranded DNA binding2.22E-02
83GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.22E-02
84GO:0009982: pseudouridine synthase activity2.31E-02
85GO:0004022: alcohol dehydrogenase (NAD) activity2.31E-02
86GO:0031072: heat shock protein binding2.31E-02
87GO:0000155: phosphorelay sensor kinase activity2.31E-02
88GO:0004712: protein serine/threonine/tyrosine kinase activity2.42E-02
89GO:0004970: ionotropic glutamate receptor activity2.73E-02
90GO:0005217: intracellular ligand-gated ion channel activity2.73E-02
91GO:0003677: DNA binding2.95E-02
92GO:0004672: protein kinase activity2.95E-02
93GO:0008134: transcription factor binding3.17E-02
94GO:0043424: protein histidine kinase binding3.40E-02
95GO:0005345: purine nucleobase transmembrane transporter activity3.40E-02
96GO:0015079: potassium ion transmembrane transporter activity3.40E-02
97GO:0005215: transporter activity4.06E-02
98GO:0022891: substrate-specific transmembrane transporter activity4.13E-02
99GO:0030570: pectate lyase activity4.13E-02
100GO:0008168: methyltransferase activity4.19E-02
101GO:0016788: hydrolase activity, acting on ester bonds4.49E-02
102GO:0004812: aminoacyl-tRNA ligase activity4.64E-02
103GO:0018024: histone-lysine N-methyltransferase activity4.64E-02
104GO:0004402: histone acetyltransferase activity4.90E-02
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Gene type



Gene DE type