Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G30690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
2GO:0034337: RNA folding0.00E+00
3GO:0006982: response to lipid hydroperoxide0.00E+00
4GO:2000505: regulation of energy homeostasis0.00E+00
5GO:0002184: cytoplasmic translational termination0.00E+00
6GO:0010335: response to non-ionic osmotic stress0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0033494: ferulate metabolic process0.00E+00
9GO:0090279: regulation of calcium ion import0.00E+00
10GO:0090470: shoot organ boundary specification0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0042821: pyridoxal biosynthetic process0.00E+00
13GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
14GO:0071474: cellular hyperosmotic response0.00E+00
15GO:0018023: peptidyl-lysine trimethylation0.00E+00
16GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
17GO:0015995: chlorophyll biosynthetic process6.97E-12
18GO:0015979: photosynthesis9.61E-07
19GO:0055114: oxidation-reduction process1.31E-06
20GO:0009658: chloroplast organization2.71E-06
21GO:0010207: photosystem II assembly3.12E-06
22GO:0010021: amylopectin biosynthetic process7.72E-05
23GO:0010143: cutin biosynthetic process9.45E-05
24GO:0009904: chloroplast accumulation movement1.21E-04
25GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.74E-04
26GO:0010190: cytochrome b6f complex assembly1.74E-04
27GO:0009903: chloroplast avoidance movement2.36E-04
28GO:1902458: positive regulation of stomatal opening3.52E-04
29GO:0048363: mucilage pectin metabolic process3.52E-04
30GO:0009443: pyridoxal 5'-phosphate salvage3.52E-04
31GO:0010362: negative regulation of anion channel activity by blue light3.52E-04
32GO:0015969: guanosine tetraphosphate metabolic process3.52E-04
33GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.52E-04
34GO:0031426: polycistronic mRNA processing3.52E-04
35GO:0043489: RNA stabilization3.52E-04
36GO:1904966: positive regulation of vitamin E biosynthetic process3.52E-04
37GO:0043953: protein transport by the Tat complex3.52E-04
38GO:0010426: DNA methylation on cytosine within a CHH sequence3.52E-04
39GO:0000481: maturation of 5S rRNA3.52E-04
40GO:1904964: positive regulation of phytol biosynthetic process3.52E-04
41GO:0065002: intracellular protein transmembrane transport3.52E-04
42GO:0043686: co-translational protein modification3.52E-04
43GO:0043087: regulation of GTPase activity3.52E-04
44GO:0071461: cellular response to redox state3.52E-04
45GO:0016559: peroxisome fission3.84E-04
46GO:0048564: photosystem I assembly3.84E-04
47GO:0019252: starch biosynthetic process4.83E-04
48GO:0010206: photosystem II repair5.65E-04
49GO:0006783: heme biosynthetic process5.65E-04
50GO:0010155: regulation of proton transport7.67E-04
51GO:0006729: tetrahydrobiopterin biosynthetic process7.67E-04
52GO:1903426: regulation of reactive oxygen species biosynthetic process7.67E-04
53GO:0030388: fructose 1,6-bisphosphate metabolic process7.67E-04
54GO:0051262: protein tetramerization7.67E-04
55GO:0080005: photosystem stoichiometry adjustment7.67E-04
56GO:0042819: vitamin B6 biosynthetic process7.67E-04
57GO:1902326: positive regulation of chlorophyll biosynthetic process7.67E-04
58GO:0018026: peptidyl-lysine monomethylation7.67E-04
59GO:0071668: plant-type cell wall assembly7.67E-04
60GO:0006435: threonyl-tRNA aminoacylation7.67E-04
61GO:0080183: response to photooxidative stress7.67E-04
62GO:0010027: thylakoid membrane organization8.42E-04
63GO:0009773: photosynthetic electron transport in photosystem I8.95E-04
64GO:0018119: peptidyl-cysteine S-nitrosylation8.95E-04
65GO:0016024: CDP-diacylglycerol biosynthetic process1.02E-03
66GO:0009725: response to hormone1.16E-03
67GO:0006094: gluconeogenesis1.16E-03
68GO:0018298: protein-chromophore linkage1.17E-03
69GO:0005977: glycogen metabolic process1.24E-03
70GO:0000913: preprophase band assembly1.24E-03
71GO:0031022: nuclear migration along microfilament1.24E-03
72GO:0006000: fructose metabolic process1.24E-03
73GO:0034051: negative regulation of plant-type hypersensitive response1.24E-03
74GO:0044375: regulation of peroxisome size1.24E-03
75GO:0019253: reductive pentose-phosphate cycle1.30E-03
76GO:0007568: aging1.40E-03
77GO:0009735: response to cytokinin1.73E-03
78GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.79E-03
79GO:0010371: regulation of gibberellin biosynthetic process1.79E-03
80GO:0006020: inositol metabolic process1.79E-03
81GO:0009152: purine ribonucleotide biosynthetic process1.79E-03
82GO:0046653: tetrahydrofolate metabolic process1.79E-03
83GO:0010239: chloroplast mRNA processing1.79E-03
84GO:0033014: tetrapyrrole biosynthetic process1.79E-03
85GO:0008615: pyridoxine biosynthetic process1.79E-03
86GO:0042823: pyridoxal phosphate biosynthetic process1.79E-03
87GO:2001141: regulation of RNA biosynthetic process1.79E-03
88GO:0006633: fatty acid biosynthetic process1.81E-03
89GO:0006631: fatty acid metabolic process1.97E-03
90GO:0009744: response to sucrose2.18E-03
91GO:0019464: glycine decarboxylation via glycine cleavage system2.40E-03
92GO:2000306: positive regulation of photomorphogenesis2.40E-03
93GO:0015994: chlorophyll metabolic process2.40E-03
94GO:0006546: glycine catabolic process2.40E-03
95GO:0006021: inositol biosynthetic process2.40E-03
96GO:0000304: response to singlet oxygen3.07E-03
97GO:0006564: L-serine biosynthetic process3.07E-03
98GO:0045038: protein import into chloroplast thylakoid membrane3.07E-03
99GO:0031365: N-terminal protein amino acid modification3.07E-03
100GO:0045489: pectin biosynthetic process3.57E-03
101GO:0010405: arabinogalactan protein metabolic process3.79E-03
102GO:0042549: photosystem II stabilization3.79E-03
103GO:0006655: phosphatidylglycerol biosynthetic process3.79E-03
104GO:0045962: positive regulation of development, heterochronic3.79E-03
105GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.79E-03
106GO:0018258: protein O-linked glycosylation via hydroxyproline3.79E-03
107GO:0009228: thiamine biosynthetic process3.79E-03
108GO:0046855: inositol phosphate dephosphorylation3.79E-03
109GO:0006096: glycolytic process3.95E-03
110GO:0009791: post-embryonic development4.11E-03
111GO:1901259: chloroplast rRNA processing4.57E-03
112GO:0007155: cell adhesion6.27E-03
113GO:0032508: DNA duplex unwinding6.27E-03
114GO:0042255: ribosome assembly6.27E-03
115GO:2000070: regulation of response to water deprivation6.27E-03
116GO:0006353: DNA-templated transcription, termination6.27E-03
117GO:0005975: carbohydrate metabolic process6.70E-03
118GO:0006002: fructose 6-phosphate metabolic process7.19E-03
119GO:0071482: cellular response to light stimulus7.19E-03
120GO:0022900: electron transport chain7.19E-03
121GO:0015996: chlorophyll catabolic process7.19E-03
122GO:0007186: G-protein coupled receptor signaling pathway7.19E-03
123GO:0032544: plastid translation7.19E-03
124GO:0009416: response to light stimulus7.24E-03
125GO:0048507: meristem development8.16E-03
126GO:0009638: phototropism9.17E-03
127GO:0006779: porphyrin-containing compound biosynthetic process9.17E-03
128GO:0048354: mucilage biosynthetic process involved in seed coat development9.17E-03
129GO:0006811: ion transport9.19E-03
130GO:0006535: cysteine biosynthetic process from serine1.02E-02
131GO:0006782: protoporphyrinogen IX biosynthetic process1.02E-02
132GO:0043069: negative regulation of programmed cell death1.02E-02
133GO:0009637: response to blue light1.06E-02
134GO:0016051: carbohydrate biosynthetic process1.06E-02
135GO:0019684: photosynthesis, light reaction1.13E-02
136GO:0009089: lysine biosynthetic process via diaminopimelate1.13E-02
137GO:0008285: negative regulation of cell proliferation1.13E-02
138GO:0006352: DNA-templated transcription, initiation1.13E-02
139GO:0006790: sulfur compound metabolic process1.25E-02
140GO:0045037: protein import into chloroplast stroma1.25E-02
141GO:0018107: peptidyl-threonine phosphorylation1.37E-02
142GO:0009718: anthocyanin-containing compound biosynthetic process1.37E-02
143GO:0009767: photosynthetic electron transport chain1.37E-02
144GO:0005986: sucrose biosynthetic process1.37E-02
145GO:0009785: blue light signaling pathway1.37E-02
146GO:0006006: glucose metabolic process1.37E-02
147GO:0009266: response to temperature stimulus1.49E-02
148GO:0034605: cellular response to heat1.49E-02
149GO:0010020: chloroplast fission1.49E-02
150GO:0006855: drug transmembrane transport1.60E-02
151GO:0046854: phosphatidylinositol phosphorylation1.61E-02
152GO:0007031: peroxisome organization1.61E-02
153GO:0042538: hyperosmotic salinity response1.72E-02
154GO:0010025: wax biosynthetic process1.74E-02
155GO:0006636: unsaturated fatty acid biosynthetic process1.74E-02
156GO:0042254: ribosome biogenesis1.79E-02
157GO:0019344: cysteine biosynthetic process1.88E-02
158GO:0080147: root hair cell development1.88E-02
159GO:0010073: meristem maintenance2.01E-02
160GO:0008299: isoprenoid biosynthetic process2.01E-02
161GO:0009768: photosynthesis, light harvesting in photosystem I2.01E-02
162GO:0007017: microtubule-based process2.01E-02
163GO:0010431: seed maturation2.15E-02
164GO:0031408: oxylipin biosynthetic process2.15E-02
165GO:0006306: DNA methylation2.15E-02
166GO:0016114: terpenoid biosynthetic process2.15E-02
167GO:0016226: iron-sulfur cluster assembly2.29E-02
168GO:0080092: regulation of pollen tube growth2.29E-02
169GO:0010227: floral organ abscission2.44E-02
170GO:0044550: secondary metabolite biosynthetic process2.55E-02
171GO:0019722: calcium-mediated signaling2.59E-02
172GO:0000271: polysaccharide biosynthetic process2.90E-02
173GO:0042335: cuticle development2.90E-02
174GO:0009741: response to brassinosteroid3.06E-02
175GO:0006520: cellular amino acid metabolic process3.06E-02
176GO:0010182: sugar mediated signaling pathway3.06E-02
177GO:0009646: response to absence of light3.22E-02
178GO:0007018: microtubule-based movement3.22E-02
179GO:0010183: pollen tube guidance3.39E-02
180GO:0006457: protein folding3.53E-02
181GO:0000302: response to reactive oxygen species3.55E-02
182GO:0032502: developmental process3.72E-02
183GO:0007264: small GTPase mediated signal transduction3.72E-02
184GO:0016032: viral process3.72E-02
185GO:0030163: protein catabolic process3.90E-02
186GO:0009567: double fertilization forming a zygote and endosperm4.07E-02
187GO:0010286: heat acclimation4.25E-02
188GO:0007267: cell-cell signaling4.25E-02
189GO:0000910: cytokinesis4.43E-02
190GO:0007623: circadian rhythm4.53E-02
191GO:0016126: sterol biosynthetic process4.62E-02
192GO:0010228: vegetative to reproductive phase transition of meristem4.74E-02
193GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.80E-02
194GO:0042128: nitrate assimilation4.99E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0036033: mediator complex binding0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
8GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity0.00E+00
9GO:0016491: oxidoreductase activity1.61E-07
10GO:0070402: NADPH binding1.97E-05
11GO:0016851: magnesium chelatase activity4.34E-05
12GO:0000293: ferric-chelate reductase activity1.74E-04
13GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.74E-04
14GO:0019843: rRNA binding2.28E-04
15GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.52E-04
16GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.52E-04
17GO:0005227: calcium activated cation channel activity3.52E-04
18GO:0009496: plastoquinol--plastocyanin reductase activity3.52E-04
19GO:0080132: fatty acid alpha-hydroxylase activity3.52E-04
20GO:0004325: ferrochelatase activity3.52E-04
21GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.52E-04
22GO:0004853: uroporphyrinogen decarboxylase activity3.52E-04
23GO:0042586: peptide deformylase activity3.52E-04
24GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.52E-04
25GO:0031957: very long-chain fatty acid-CoA ligase activity3.52E-04
26GO:0042389: omega-3 fatty acid desaturase activity7.67E-04
27GO:0009977: proton motive force dependent protein transmembrane transporter activity7.67E-04
28GO:0004617: phosphoglycerate dehydrogenase activity7.67E-04
29GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.67E-04
30GO:0052832: inositol monophosphate 3-phosphatase activity7.67E-04
31GO:0033201: alpha-1,4-glucan synthase activity7.67E-04
32GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.67E-04
33GO:0016630: protochlorophyllide reductase activity7.67E-04
34GO:0004829: threonine-tRNA ligase activity7.67E-04
35GO:0019156: isoamylase activity7.67E-04
36GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.67E-04
37GO:0008934: inositol monophosphate 1-phosphatase activity7.67E-04
38GO:0052833: inositol monophosphate 4-phosphatase activity7.67E-04
39GO:0008728: GTP diphosphokinase activity7.67E-04
40GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity7.67E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.67E-04
42GO:0050017: L-3-cyanoalanine synthase activity7.67E-04
43GO:0048531: beta-1,3-galactosyltransferase activity7.67E-04
44GO:0004565: beta-galactosidase activity1.16E-03
45GO:0008864: formyltetrahydrofolate deformylase activity1.24E-03
46GO:0005504: fatty acid binding1.24E-03
47GO:0004373: glycogen (starch) synthase activity1.24E-03
48GO:0050734: hydroxycinnamoyltransferase activity1.24E-03
49GO:0003913: DNA photolyase activity1.24E-03
50GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.24E-03
51GO:0004148: dihydrolipoyl dehydrogenase activity1.24E-03
52GO:0030267: glyoxylate reductase (NADP) activity1.24E-03
53GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.24E-03
54GO:0005525: GTP binding1.72E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity1.79E-03
56GO:0048027: mRNA 5'-UTR binding1.79E-03
57GO:0004792: thiosulfate sulfurtransferase activity1.79E-03
58GO:0009882: blue light photoreceptor activity1.79E-03
59GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.79E-03
60GO:0043023: ribosomal large subunit binding1.79E-03
61GO:0016279: protein-lysine N-methyltransferase activity2.40E-03
62GO:0001053: plastid sigma factor activity2.40E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.40E-03
64GO:0045430: chalcone isomerase activity2.40E-03
65GO:0016987: sigma factor activity2.40E-03
66GO:0009011: starch synthase activity2.40E-03
67GO:0043495: protein anchor2.40E-03
68GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.66E-03
69GO:0042802: identical protein binding3.02E-03
70GO:0003959: NADPH dehydrogenase activity3.07E-03
71GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.79E-03
72GO:1990714: hydroxyproline O-galactosyltransferase activity3.79E-03
73GO:0004332: fructose-bisphosphate aldolase activity3.79E-03
74GO:0004556: alpha-amylase activity3.79E-03
75GO:0004130: cytochrome-c peroxidase activity3.79E-03
76GO:0042578: phosphoric ester hydrolase activity3.79E-03
77GO:0004872: receptor activity4.11E-03
78GO:0048038: quinone binding4.40E-03
79GO:0004124: cysteine synthase activity4.57E-03
80GO:0051920: peroxiredoxin activity4.57E-03
81GO:0004017: adenylate kinase activity4.57E-03
82GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.57E-03
83GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.57E-03
84GO:0102391: decanoate--CoA ligase activity4.57E-03
85GO:0005261: cation channel activity4.57E-03
86GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.57E-03
87GO:0009881: photoreceptor activity5.40E-03
88GO:0019899: enzyme binding5.40E-03
89GO:0004467: long-chain fatty acid-CoA ligase activity5.40E-03
90GO:0016209: antioxidant activity6.27E-03
91GO:0043022: ribosome binding6.27E-03
92GO:0004033: aldo-keto reductase (NADP) activity6.27E-03
93GO:0016168: chlorophyll binding6.74E-03
94GO:0005515: protein binding6.91E-03
95GO:0008135: translation factor activity, RNA binding7.19E-03
96GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.19E-03
97GO:0008236: serine-type peptidase activity7.91E-03
98GO:0071949: FAD binding8.16E-03
99GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.17E-03
100GO:0004743: pyruvate kinase activity9.17E-03
101GO:0030955: potassium ion binding9.17E-03
102GO:0003924: GTPase activity1.02E-02
103GO:0003993: acid phosphatase activity1.11E-02
104GO:0005089: Rho guanyl-nucleotide exchange factor activity1.13E-02
105GO:0031072: heat shock protein binding1.37E-02
106GO:0000155: phosphorelay sensor kinase activity1.37E-02
107GO:0051537: 2 iron, 2 sulfur cluster binding1.48E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.49E-02
109GO:0008266: poly(U) RNA binding1.49E-02
110GO:0031409: pigment binding1.74E-02
111GO:0004601: peroxidase activity1.75E-02
112GO:0003729: mRNA binding1.79E-02
113GO:0016788: hydrolase activity, acting on ester bonds1.79E-02
114GO:0051536: iron-sulfur cluster binding1.88E-02
115GO:0003690: double-stranded DNA binding1.91E-02
116GO:0016887: ATPase activity1.98E-02
117GO:0005509: calcium ion binding2.13E-02
118GO:0004176: ATP-dependent peptidase activity2.15E-02
119GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.29E-02
120GO:0022891: substrate-specific transmembrane transporter activity2.44E-02
121GO:0003727: single-stranded RNA binding2.59E-02
122GO:0008080: N-acetyltransferase activity3.06E-02
123GO:0016758: transferase activity, transferring hexosyl groups3.21E-02
124GO:0016853: isomerase activity3.22E-02
125GO:0010181: FMN binding3.22E-02
126GO:0016787: hydrolase activity3.53E-02
127GO:0004252: serine-type endopeptidase activity3.65E-02
128GO:0030246: carbohydrate binding3.73E-02
129GO:0016791: phosphatase activity4.07E-02
130GO:0005200: structural constituent of cytoskeleton4.25E-02
131GO:0016597: amino acid binding4.43E-02
132GO:0008017: microtubule binding4.74E-02
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Gene type



Gene DE type