GO Enrichment Analysis of Co-expressed Genes with
AT1G29700
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 3 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 4 | GO:0006982: response to lipid hydroperoxide | 0.00E+00 |
| 5 | GO:0010335: response to non-ionic osmotic stress | 0.00E+00 |
| 6 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 7 | GO:0015979: photosynthesis | 2.81E-13 |
| 8 | GO:0010207: photosystem II assembly | 3.09E-08 |
| 9 | GO:0015995: chlorophyll biosynthetic process | 1.65E-07 |
| 10 | GO:0009773: photosynthetic electron transport in photosystem I | 7.47E-07 |
| 11 | GO:0006636: unsaturated fatty acid biosynthetic process | 3.18E-06 |
| 12 | GO:0009768: photosynthesis, light harvesting in photosystem I | 5.05E-06 |
| 13 | GO:0018298: protein-chromophore linkage | 5.92E-06 |
| 14 | GO:0032544: plastid translation | 1.16E-05 |
| 15 | GO:0009658: chloroplast organization | 1.31E-05 |
| 16 | GO:0006810: transport | 2.23E-05 |
| 17 | GO:0055114: oxidation-reduction process | 5.26E-05 |
| 18 | GO:0015994: chlorophyll metabolic process | 5.93E-05 |
| 19 | GO:0010600: regulation of auxin biosynthetic process | 5.93E-05 |
| 20 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 1.85E-04 |
| 21 | GO:0009854: oxidative photosynthetic carbon pathway | 1.85E-04 |
| 22 | GO:0010196: nonphotochemical quenching | 2.42E-04 |
| 23 | GO:0009645: response to low light intensity stimulus | 2.42E-04 |
| 24 | GO:0009735: response to cytokinin | 2.73E-04 |
| 25 | GO:0043953: protein transport by the Tat complex | 3.02E-04 |
| 26 | GO:0046467: membrane lipid biosynthetic process | 3.02E-04 |
| 27 | GO:0010426: DNA methylation on cytosine within a CHH sequence | 3.02E-04 |
| 28 | GO:1904966: positive regulation of vitamin E biosynthetic process | 3.02E-04 |
| 29 | GO:0051775: response to redox state | 3.02E-04 |
| 30 | GO:0071277: cellular response to calcium ion | 3.02E-04 |
| 31 | GO:1904964: positive regulation of phytol biosynthetic process | 3.02E-04 |
| 32 | GO:0065002: intracellular protein transmembrane transport | 3.02E-04 |
| 33 | GO:0043087: regulation of GTPase activity | 3.02E-04 |
| 34 | GO:0071461: cellular response to redox state | 3.02E-04 |
| 35 | GO:0080093: regulation of photorespiration | 3.02E-04 |
| 36 | GO:0031998: regulation of fatty acid beta-oxidation | 3.02E-04 |
| 37 | GO:0034337: RNA folding | 3.02E-04 |
| 38 | GO:0019510: S-adenosylhomocysteine catabolic process | 3.02E-04 |
| 39 | GO:0010928: regulation of auxin mediated signaling pathway | 3.05E-04 |
| 40 | GO:0009704: de-etiolation | 3.05E-04 |
| 41 | GO:0071482: cellular response to light stimulus | 3.75E-04 |
| 42 | GO:0006783: heme biosynthetic process | 4.52E-04 |
| 43 | GO:0006754: ATP biosynthetic process | 4.52E-04 |
| 44 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.34E-04 |
| 45 | GO:0042819: vitamin B6 biosynthetic process | 6.60E-04 |
| 46 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 6.60E-04 |
| 47 | GO:0080005: photosystem stoichiometry adjustment | 6.60E-04 |
| 48 | GO:0033353: S-adenosylmethionine cycle | 6.60E-04 |
| 49 | GO:0008616: queuosine biosynthetic process | 6.60E-04 |
| 50 | GO:0006729: tetrahydrobiopterin biosynthetic process | 6.60E-04 |
| 51 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 6.60E-04 |
| 52 | GO:0018119: peptidyl-cysteine S-nitrosylation | 7.19E-04 |
| 53 | GO:0006108: malate metabolic process | 9.29E-04 |
| 54 | GO:0006094: gluconeogenesis | 9.29E-04 |
| 55 | GO:0009767: photosynthetic electron transport chain | 9.29E-04 |
| 56 | GO:0005986: sucrose biosynthetic process | 9.29E-04 |
| 57 | GO:0019253: reductive pentose-phosphate cycle | 1.04E-03 |
| 58 | GO:0006000: fructose metabolic process | 1.07E-03 |
| 59 | GO:0090391: granum assembly | 1.07E-03 |
| 60 | GO:0006518: peptide metabolic process | 1.07E-03 |
| 61 | GO:0044375: regulation of peroxisome size | 1.07E-03 |
| 62 | GO:0007031: peroxisome organization | 1.17E-03 |
| 63 | GO:0009853: photorespiration | 1.18E-03 |
| 64 | GO:0033014: tetrapyrrole biosynthetic process | 1.53E-03 |
| 65 | GO:0008615: pyridoxine biosynthetic process | 1.53E-03 |
| 66 | GO:0042823: pyridoxal phosphate biosynthetic process | 1.53E-03 |
| 67 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 1.53E-03 |
| 68 | GO:2001141: regulation of RNA biosynthetic process | 1.53E-03 |
| 69 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.53E-03 |
| 70 | GO:0071484: cellular response to light intensity | 1.53E-03 |
| 71 | GO:0009152: purine ribonucleotide biosynthetic process | 1.53E-03 |
| 72 | GO:0046653: tetrahydrofolate metabolic process | 1.53E-03 |
| 73 | GO:0006107: oxaloacetate metabolic process | 1.53E-03 |
| 74 | GO:0010114: response to red light | 1.63E-03 |
| 75 | GO:0019748: secondary metabolic process | 1.90E-03 |
| 76 | GO:0006536: glutamate metabolic process | 2.06E-03 |
| 77 | GO:0006546: glycine catabolic process | 2.06E-03 |
| 78 | GO:0006734: NADH metabolic process | 2.06E-03 |
| 79 | GO:0015976: carbon utilization | 2.06E-03 |
| 80 | GO:0045727: positive regulation of translation | 2.06E-03 |
| 81 | GO:0006656: phosphatidylcholine biosynthetic process | 2.63E-03 |
| 82 | GO:0043097: pyrimidine nucleoside salvage | 2.63E-03 |
| 83 | GO:0006097: glyoxylate cycle | 2.63E-03 |
| 84 | GO:0035434: copper ion transmembrane transport | 2.63E-03 |
| 85 | GO:0009107: lipoate biosynthetic process | 2.63E-03 |
| 86 | GO:0042631: cellular response to water deprivation | 2.64E-03 |
| 87 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 3.24E-03 |
| 88 | GO:0006206: pyrimidine nucleobase metabolic process | 3.24E-03 |
| 89 | GO:0050665: hydrogen peroxide biosynthetic process | 3.24E-03 |
| 90 | GO:0042549: photosystem II stabilization | 3.24E-03 |
| 91 | GO:0019252: starch biosynthetic process | 3.27E-03 |
| 92 | GO:0045926: negative regulation of growth | 3.90E-03 |
| 93 | GO:1901259: chloroplast rRNA processing | 3.90E-03 |
| 94 | GO:0010189: vitamin E biosynthetic process | 3.90E-03 |
| 95 | GO:0005975: carbohydrate metabolic process | 4.05E-03 |
| 96 | GO:1900057: positive regulation of leaf senescence | 4.60E-03 |
| 97 | GO:0010161: red light signaling pathway | 4.60E-03 |
| 98 | GO:0009772: photosynthetic electron transport in photosystem II | 4.60E-03 |
| 99 | GO:0010027: thylakoid membrane organization | 5.06E-03 |
| 100 | GO:0042742: defense response to bacterium | 5.28E-03 |
| 101 | GO:0042255: ribosome assembly | 5.35E-03 |
| 102 | GO:0006353: DNA-templated transcription, termination | 5.35E-03 |
| 103 | GO:0016559: peroxisome fission | 5.35E-03 |
| 104 | GO:0009657: plastid organization | 6.13E-03 |
| 105 | GO:0006002: fructose 6-phosphate metabolic process | 6.13E-03 |
| 106 | GO:0006633: fatty acid biosynthetic process | 6.64E-03 |
| 107 | GO:0032259: methylation | 6.75E-03 |
| 108 | GO:0010206: photosystem II repair | 6.95E-03 |
| 109 | GO:0090333: regulation of stomatal closure | 6.95E-03 |
| 110 | GO:0010218: response to far red light | 7.29E-03 |
| 111 | GO:0010205: photoinhibition | 7.80E-03 |
| 112 | GO:0009637: response to blue light | 8.39E-03 |
| 113 | GO:0006782: protoporphyrinogen IX biosynthetic process | 8.70E-03 |
| 114 | GO:0043069: negative regulation of programmed cell death | 8.70E-03 |
| 115 | GO:0034599: cellular response to oxidative stress | 8.77E-03 |
| 116 | GO:0006099: tricarboxylic acid cycle | 8.77E-03 |
| 117 | GO:0009409: response to cold | 9.53E-03 |
| 118 | GO:0019684: photosynthesis, light reaction | 9.63E-03 |
| 119 | GO:0006352: DNA-templated transcription, initiation | 9.63E-03 |
| 120 | GO:0000272: polysaccharide catabolic process | 9.63E-03 |
| 121 | GO:0006807: nitrogen compound metabolic process | 1.16E-02 |
| 122 | GO:0018107: peptidyl-threonine phosphorylation | 1.16E-02 |
| 123 | GO:0009725: response to hormone | 1.16E-02 |
| 124 | GO:0009644: response to high light intensity | 1.17E-02 |
| 125 | GO:0034605: cellular response to heat | 1.26E-02 |
| 126 | GO:0009266: response to temperature stimulus | 1.26E-02 |
| 127 | GO:0009585: red, far-red light phototransduction | 1.46E-02 |
| 128 | GO:0006825: copper ion transport | 1.71E-02 |
| 129 | GO:0006306: DNA methylation | 1.82E-02 |
| 130 | GO:0031408: oxylipin biosynthetic process | 1.82E-02 |
| 131 | GO:0061077: chaperone-mediated protein folding | 1.82E-02 |
| 132 | GO:0016226: iron-sulfur cluster assembly | 1.95E-02 |
| 133 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.95E-02 |
| 134 | GO:0006730: one-carbon metabolic process | 1.95E-02 |
| 135 | GO:0007005: mitochondrion organization | 1.95E-02 |
| 136 | GO:0010017: red or far-red light signaling pathway | 1.95E-02 |
| 137 | GO:0009693: ethylene biosynthetic process | 2.07E-02 |
| 138 | GO:0006817: phosphate ion transport | 2.20E-02 |
| 139 | GO:0019722: calcium-mediated signaling | 2.20E-02 |
| 140 | GO:0009306: protein secretion | 2.20E-02 |
| 141 | GO:0006606: protein import into nucleus | 2.46E-02 |
| 142 | GO:0006520: cellular amino acid metabolic process | 2.59E-02 |
| 143 | GO:0009741: response to brassinosteroid | 2.59E-02 |
| 144 | GO:0015986: ATP synthesis coupled proton transport | 2.73E-02 |
| 145 | GO:0006814: sodium ion transport | 2.73E-02 |
| 146 | GO:0009646: response to absence of light | 2.73E-02 |
| 147 | GO:0009058: biosynthetic process | 2.76E-02 |
| 148 | GO:0009791: post-embryonic development | 2.87E-02 |
| 149 | GO:0000302: response to reactive oxygen species | 3.01E-02 |
| 150 | GO:0032502: developmental process | 3.16E-02 |
| 151 | GO:0030163: protein catabolic process | 3.31E-02 |
| 152 | GO:0009567: double fertilization forming a zygote and endosperm | 3.46E-02 |
| 153 | GO:0007623: circadian rhythm | 3.61E-02 |
| 154 | GO:0007267: cell-cell signaling | 3.61E-02 |
| 155 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 4.07E-02 |
| 156 | GO:0042128: nitrate assimilation | 4.24E-02 |
| 157 | GO:0010411: xyloglucan metabolic process | 4.40E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0090711: FMN hydrolase activity | 0.00E+00 |
| 3 | GO:0052667: phosphomethylethanolamine N-methyltransferase activity | 0.00E+00 |
| 4 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 5 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 6 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 7 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 8 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 9 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 10 | GO:0008465: glycerate dehydrogenase activity | 0.00E+00 |
| 11 | GO:0046408: chlorophyll synthetase activity | 0.00E+00 |
| 12 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 13 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 14 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 15 | GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity | 0.00E+00 |
| 16 | GO:0030504: inorganic diphosphate transmembrane transporter activity | 0.00E+00 |
| 17 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 18 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 19 | GO:0016491: oxidoreductase activity | 2.25E-06 |
| 20 | GO:0031409: pigment binding | 3.18E-06 |
| 21 | GO:0016168: chlorophyll binding | 3.41E-06 |
| 22 | GO:0042389: omega-3 fatty acid desaturase activity | 4.15E-06 |
| 23 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.16E-05 |
| 24 | GO:0016615: malate dehydrogenase activity | 1.36E-04 |
| 25 | GO:0030060: L-malate dehydrogenase activity | 1.85E-04 |
| 26 | GO:0080132: fatty acid alpha-hydroxylase activity | 3.02E-04 |
| 27 | GO:0004325: ferrochelatase activity | 3.02E-04 |
| 28 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 3.02E-04 |
| 29 | GO:0008746: NAD(P)+ transhydrogenase activity | 3.02E-04 |
| 30 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 3.02E-04 |
| 31 | GO:0016776: phosphotransferase activity, phosphate group as acceptor | 3.02E-04 |
| 32 | GO:0004013: adenosylhomocysteinase activity | 3.02E-04 |
| 33 | GO:0048038: quinone binding | 3.93E-04 |
| 34 | GO:0030234: enzyme regulator activity | 6.23E-04 |
| 35 | GO:0018708: thiol S-methyltransferase activity | 6.60E-04 |
| 36 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 6.60E-04 |
| 37 | GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity | 6.60E-04 |
| 38 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 6.60E-04 |
| 39 | GO:0008883: glutamyl-tRNA reductase activity | 6.60E-04 |
| 40 | GO:0047746: chlorophyllase activity | 6.60E-04 |
| 41 | GO:0010297: heteropolysaccharide binding | 6.60E-04 |
| 42 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 6.60E-04 |
| 43 | GO:0004047: aminomethyltransferase activity | 6.60E-04 |
| 44 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 6.60E-04 |
| 45 | GO:0008479: queuine tRNA-ribosyltransferase activity | 6.60E-04 |
| 46 | GO:0019843: rRNA binding | 9.08E-04 |
| 47 | GO:0004565: beta-galactosidase activity | 9.29E-04 |
| 48 | GO:0005315: inorganic phosphate transmembrane transporter activity | 9.29E-04 |
| 49 | GO:0016992: lipoate synthase activity | 1.07E-03 |
| 50 | GO:0050307: sucrose-phosphate phosphatase activity | 1.07E-03 |
| 51 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 1.07E-03 |
| 52 | GO:0008864: formyltetrahydrofolate deformylase activity | 1.07E-03 |
| 53 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 1.07E-03 |
| 54 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 1.53E-03 |
| 55 | GO:0016851: magnesium chelatase activity | 1.53E-03 |
| 56 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 1.53E-03 |
| 57 | GO:0004351: glutamate decarboxylase activity | 1.53E-03 |
| 58 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 1.53E-03 |
| 59 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 1.53E-03 |
| 60 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.80E-03 |
| 61 | GO:0016987: sigma factor activity | 2.06E-03 |
| 62 | GO:0009011: starch synthase activity | 2.06E-03 |
| 63 | GO:0043495: protein anchor | 2.06E-03 |
| 64 | GO:0008891: glycolate oxidase activity | 2.06E-03 |
| 65 | GO:0001053: plastid sigma factor activity | 2.06E-03 |
| 66 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 2.06E-03 |
| 67 | GO:0008453: alanine-glyoxylate transaminase activity | 2.06E-03 |
| 68 | GO:0042802: identical protein binding | 2.12E-03 |
| 69 | GO:0003727: single-stranded RNA binding | 2.25E-03 |
| 70 | GO:0004130: cytochrome-c peroxidase activity | 3.24E-03 |
| 71 | GO:0042578: phosphoric ester hydrolase activity | 3.24E-03 |
| 72 | GO:0004332: fructose-bisphosphate aldolase activity | 3.24E-03 |
| 73 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 3.90E-03 |
| 74 | GO:0004849: uridine kinase activity | 3.90E-03 |
| 75 | GO:0003886: DNA (cytosine-5-)-methyltransferase activity | 3.90E-03 |
| 76 | GO:0019899: enzyme binding | 4.60E-03 |
| 77 | GO:0005375: copper ion transmembrane transporter activity | 6.13E-03 |
| 78 | GO:0008135: translation factor activity, RNA binding | 6.13E-03 |
| 79 | GO:0071949: FAD binding | 6.95E-03 |
| 80 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 6.95E-03 |
| 81 | GO:0004222: metalloendopeptidase activity | 7.29E-03 |
| 82 | GO:0009055: electron carrier activity | 8.02E-03 |
| 83 | GO:0003746: translation elongation factor activity | 8.39E-03 |
| 84 | GO:0005515: protein binding | 1.02E-02 |
| 85 | GO:0004185: serine-type carboxypeptidase activity | 1.08E-02 |
| 86 | GO:0004089: carbonate dehydratase activity | 1.16E-02 |
| 87 | GO:0031072: heat shock protein binding | 1.16E-02 |
| 88 | GO:0043621: protein self-association | 1.17E-02 |
| 89 | GO:0015293: symporter activity | 1.22E-02 |
| 90 | GO:0008266: poly(U) RNA binding | 1.26E-02 |
| 91 | GO:0051287: NAD binding | 1.31E-02 |
| 92 | GO:0003690: double-stranded DNA binding | 1.52E-02 |
| 93 | GO:0051536: iron-sulfur cluster binding | 1.59E-02 |
| 94 | GO:0005528: FK506 binding | 1.59E-02 |
| 95 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.79E-02 |
| 96 | GO:0022891: substrate-specific transmembrane transporter activity | 2.07E-02 |
| 97 | GO:0008514: organic anion transmembrane transporter activity | 2.20E-02 |
| 98 | GO:0042803: protein homodimerization activity | 2.29E-02 |
| 99 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.59E-02 |
| 100 | GO:0050662: coenzyme binding | 2.73E-02 |
| 101 | GO:0010181: FMN binding | 2.73E-02 |
| 102 | GO:0004872: receptor activity | 2.87E-02 |
| 103 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 3.01E-02 |
| 104 | GO:0008565: protein transporter activity | 3.13E-02 |
| 105 | GO:0008483: transaminase activity | 3.61E-02 |
| 106 | GO:0004721: phosphoprotein phosphatase activity | 4.40E-02 |
| 107 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 4.40E-02 |
| 108 | GO:0016887: ATPase activity | 4.81E-02 |
| 109 | GO:0005096: GTPase activator activity | 4.90E-02 |