co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0070979: protein K11-linked ubiquitination	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0009606: tropism	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:0035884: arabinan biosynthetic process	0.00E+00
7	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
8	GO:0097164: ammonium ion metabolic process	0.00E+00
9	GO:0045184: establishment of protein localization	0.00E+00
10	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
11	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
12	GO:0015843: methylammonium transport	0.00E+00
13	GO:0009733: response to auxin	4.84E-12
14	GO:0009734: auxin-activated signaling pathway	3.74E-11
15	GO:0046620: regulation of organ growth	1.46E-08
16	GO:0040008: regulation of growth	1.31E-07
17	GO:0009926: auxin polar transport	3.21E-05
18	GO:0009657: plastid organization	7.48E-05
19	GO:0051513: regulation of monopolar cell growth	1.27E-04
20	GO:2000038: regulation of stomatal complex development	2.17E-04
21	GO:0046656: folic acid biosynthetic process	2.17E-04
22	GO:0032876: negative regulation of DNA endoreduplication	3.26E-04
23	GO:0009913: epidermal cell differentiation	4.56E-04
24	GO:0042793: transcription from plastid promoter	4.56E-04
25	GO:0007275: multicellular organism development	5.28E-04
26	GO:0046654: tetrahydrofolate biosynthetic process	6.04E-04
27	GO:0015904: tetracycline transport	6.58E-04
28	GO:0034757: negative regulation of iron ion transport	6.58E-04
29	GO:0042659: regulation of cell fate specification	6.58E-04
30	GO:1901537: positive regulation of DNA demethylation	6.58E-04
31	GO:0090558: plant epidermis development	6.58E-04
32	GO:0010480: microsporocyte differentiation	6.58E-04
33	GO:0035987: endodermal cell differentiation	6.58E-04
34	GO:0043609: regulation of carbon utilization	6.58E-04
35	GO:0006436: tryptophanyl-tRNA aminoacylation	6.58E-04
36	GO:0000066: mitochondrial ornithine transport	6.58E-04
37	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.75E-04
38	GO:0000105: histidine biosynthetic process	9.57E-04
39	GO:0007389: pattern specification process	1.16E-03
40	GO:0009658: chloroplast organization	1.31E-03
41	GO:0000373: Group II intron splicing	1.39E-03
42	GO:2000123: positive regulation of stomatal complex development	1.42E-03
43	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.42E-03
44	GO:0010569: regulation of double-strand break repair via homologous recombination	1.42E-03
45	GO:0070981: L-asparagine biosynthetic process	1.42E-03
46	GO:2000039: regulation of trichome morphogenesis	1.42E-03
47	GO:0010271: regulation of chlorophyll catabolic process	1.42E-03
48	GO:0018026: peptidyl-lysine monomethylation	1.42E-03
49	GO:0071497: cellular response to freezing	1.42E-03
50	GO:1900033: negative regulation of trichome patterning	1.42E-03
51	GO:1904143: positive regulation of carotenoid biosynthetic process	1.42E-03
52	GO:0080009: mRNA methylation	1.42E-03
53	GO:0006529: asparagine biosynthetic process	1.42E-03
54	GO:0009416: response to light stimulus	1.55E-03
55	GO:0032502: developmental process	1.87E-03
56	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.15E-03
57	GO:0010252: auxin homeostasis	2.19E-03
58	GO:0009451: RNA modification	2.33E-03
59	GO:0090708: specification of plant organ axis polarity	2.34E-03
60	GO:0006000: fructose metabolic process	2.34E-03
61	GO:0080117: secondary growth	2.34E-03
62	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.34E-03
63	GO:0001578: microtubule bundle formation	2.34E-03
64	GO:0006760: folic acid-containing compound metabolic process	2.34E-03
65	GO:0006357: regulation of transcription from RNA polymerase II promoter	2.44E-03
66	GO:0007231: osmosensory signaling pathway	3.40E-03
67	GO:0030071: regulation of mitotic metaphase/anaphase transition	3.40E-03
68	GO:0051639: actin filament network formation	3.40E-03
69	GO:0010239: chloroplast mRNA processing	3.40E-03
70	GO:0044211: CTP salvage	3.40E-03
71	GO:0015696: ammonium transport	3.40E-03
72	GO:0046739: transport of virus in multicellular host	3.40E-03
73	GO:2000904: regulation of starch metabolic process	3.40E-03
74	GO:0051289: protein homotetramerization	3.40E-03
75	GO:0043572: plastid fission	3.40E-03
76	GO:1902476: chloride transmembrane transport	3.40E-03
77	GO:0009742: brassinosteroid mediated signaling pathway	4.21E-03
78	GO:0051764: actin crosslink formation	4.58E-03
79	GO:0051322: anaphase	4.58E-03
80	GO:0072488: ammonium transmembrane transport	4.58E-03
81	GO:0030104: water homeostasis	4.58E-03
82	GO:0033500: carbohydrate homeostasis	4.58E-03
83	GO:0006021: inositol biosynthetic process	4.58E-03
84	GO:0044206: UMP salvage	4.58E-03
85	GO:0006346: methylation-dependent chromatin silencing	4.58E-03
86	GO:1901141: regulation of lignin biosynthetic process	4.58E-03
87	GO:0005992: trehalose biosynthetic process	4.58E-03
88	GO:0048629: trichome patterning	4.58E-03
89	GO:1902183: regulation of shoot apical meristem development	5.89E-03
90	GO:0016123: xanthophyll biosynthetic process	5.89E-03
91	GO:0010158: abaxial cell fate specification	5.89E-03
92	GO:0030308: negative regulation of cell growth	5.89E-03
93	GO:0010375: stomatal complex patterning	5.89E-03
94	GO:0009904: chloroplast accumulation movement	5.89E-03
95	GO:0048497: maintenance of floral organ identity	5.89E-03
96	GO:0009107: lipoate biosynthetic process	5.89E-03
97	GO:0010082: regulation of root meristem growth	6.67E-03
98	GO:0006655: phosphatidylglycerol biosynthetic process	7.31E-03
99	GO:1902456: regulation of stomatal opening	7.31E-03
100	GO:0048831: regulation of shoot system development	7.31E-03
101	GO:0010315: auxin efflux	7.31E-03
102	GO:0006206: pyrimidine nucleobase metabolic process	7.31E-03
103	GO:0018258: protein O-linked glycosylation via hydroxyproline	7.31E-03
104	GO:0010405: arabinogalactan protein metabolic process	7.31E-03
105	GO:0071555: cell wall organization	8.28E-03
106	GO:0010087: phloem or xylem histogenesis	8.53E-03
107	GO:2000037: regulation of stomatal complex patterning	8.84E-03
108	GO:2000067: regulation of root morphogenesis	8.84E-03
109	GO:0071470: cellular response to osmotic stress	8.84E-03
110	GO:0009942: longitudinal axis specification	8.84E-03
111	GO:0048509: regulation of meristem development	8.84E-03
112	GO:1901259: chloroplast rRNA processing	8.84E-03
113	GO:0009903: chloroplast avoidance movement	8.84E-03
114	GO:0030488: tRNA methylation	8.84E-03
115	GO:0080086: stamen filament development	8.84E-03
116	GO:0005975: carbohydrate metabolic process	9.12E-03
117	GO:0009741: response to brassinosteroid	9.20E-03
118	GO:0009646: response to absence of light	9.91E-03
119	GO:0007050: cell cycle arrest	1.05E-02
120	GO:0010050: vegetative phase change	1.05E-02
121	GO:0006821: chloride transport	1.05E-02
122	GO:0048437: floral organ development	1.05E-02
123	GO:0015937: coenzyme A biosynthetic process	1.05E-02
124	GO:0009396: folic acid-containing compound biosynthetic process	1.05E-02
125	GO:0030307: positive regulation of cell growth	1.05E-02
126	GO:0010103: stomatal complex morphogenesis	1.05E-02
127	GO:0048825: cotyledon development	1.06E-02
128	GO:0080156: mitochondrial mRNA modification	1.14E-02
129	GO:0010583: response to cyclopentenone	1.22E-02
130	GO:0001522: pseudouridine synthesis	1.22E-02
131	GO:0009850: auxin metabolic process	1.22E-02
132	GO:0042255: ribosome assembly	1.22E-02
133	GO:0048766: root hair initiation	1.22E-02
134	GO:0032875: regulation of DNA endoreduplication	1.22E-02
135	GO:0055075: potassium ion homeostasis	1.22E-02
136	GO:0009828: plant-type cell wall loosening	1.39E-02
137	GO:0006002: fructose 6-phosphate metabolic process	1.41E-02
138	GO:0009827: plant-type cell wall modification	1.41E-02
139	GO:0010497: plasmodesmata-mediated intercellular transport	1.41E-02
140	GO:0009051: pentose-phosphate shunt, oxidative branch	1.60E-02
141	GO:2000024: regulation of leaf development	1.60E-02
142	GO:0000902: cell morphogenesis	1.60E-02
143	GO:0010027: thylakoid membrane organization	1.66E-02
144	GO:0009638: phototropism	1.80E-02
145	GO:0042761: very long-chain fatty acid biosynthetic process	1.80E-02
146	GO:2000280: regulation of root development	1.80E-02
147	GO:1900865: chloroplast RNA modification	1.80E-02
148	GO:0031425: chloroplast RNA processing	1.80E-02
149	GO:0010411: xyloglucan metabolic process	1.96E-02
150	GO:0006949: syncytium formation	2.01E-02
151	GO:0006259: DNA metabolic process	2.01E-02
152	GO:0006535: cysteine biosynthetic process from serine	2.01E-02
153	GO:0009641: shade avoidance	2.01E-02
154	GO:0048481: plant ovule development	2.17E-02
155	GO:0010015: root morphogenesis	2.23E-02
156	GO:0006816: calcium ion transport	2.23E-02
157	GO:0009773: photosynthetic electron transport in photosystem I	2.23E-02
158	GO:0006265: DNA topological change	2.23E-02
159	GO:0048229: gametophyte development	2.23E-02
160	GO:0000160: phosphorelay signal transduction system	2.28E-02
161	GO:0080167: response to karrikin	2.37E-02
162	GO:0008361: regulation of cell size	2.46E-02
163	GO:0006790: sulfur compound metabolic process	2.46E-02
164	GO:0016024: CDP-diacylglycerol biosynthetic process	2.46E-02
165	GO:0045037: protein import into chloroplast stroma	2.46E-02
166	GO:0010582: floral meristem determinacy	2.46E-02
167	GO:0030154: cell differentiation	2.49E-02
168	GO:0009767: photosynthetic electron transport chain	2.69E-02
169	GO:2000012: regulation of auxin polar transport	2.69E-02
170	GO:0010628: positive regulation of gene expression	2.69E-02
171	GO:0009785: blue light signaling pathway	2.69E-02
172	GO:0009691: cytokinin biosynthetic process	2.69E-02
173	GO:0006006: glucose metabolic process	2.69E-02
174	GO:0010075: regulation of meristem growth	2.69E-02
175	GO:0034599: cellular response to oxidative stress	2.88E-02
176	GO:0009934: regulation of meristem structural organization	2.93E-02
177	GO:0006541: glutamine metabolic process	2.93E-02
178	GO:0010207: photosystem II assembly	2.93E-02
179	GO:0010020: chloroplast fission	2.93E-02
180	GO:0006839: mitochondrial transport	3.14E-02
181	GO:0080188: RNA-directed DNA methylation	3.18E-02
182	GO:0090351: seedling development	3.18E-02
183	GO:0070588: calcium ion transmembrane transport	3.18E-02
184	GO:0046854: phosphatidylinositol phosphorylation	3.18E-02
185	GO:0007623: circadian rhythm	3.34E-02
186	GO:0006071: glycerol metabolic process	3.44E-02
187	GO:0006833: water transport	3.44E-02
188	GO:0042546: cell wall biogenesis	3.69E-02
189	GO:0019344: cysteine biosynthetic process	3.70E-02
190	GO:0009944: polarity specification of adaxial/abaxial axis	3.70E-02
191	GO:0080147: root hair cell development	3.70E-02
192	GO:0051017: actin filament bundle assembly	3.70E-02
193	GO:0009739: response to gibberellin	3.83E-02
194	GO:0051302: regulation of cell division	3.97E-02
195	GO:0006418: tRNA aminoacylation for protein translation	3.97E-02
196	GO:0010073: meristem maintenance	3.97E-02
197	GO:0009751: response to salicylic acid	4.11E-02
198	GO:0006306: DNA methylation	4.25E-02
199	GO:0016998: cell wall macromolecule catabolic process	4.25E-02
200	GO:0009664: plant-type cell wall organization	4.44E-02
201	GO:0006730: one-carbon metabolic process	4.53E-02
202	GO:0031348: negative regulation of defense response	4.53E-02
203	GO:0019748: secondary metabolic process	4.53E-02
204	GO:0009736: cytokinin-activated signaling pathway	4.76E-02
205	GO:0071215: cellular response to abscisic acid stimulus	4.81E-02
206	GO:0009686: gibberellin biosynthetic process	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0070009: serine-type aminopeptidase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0004401: histidinol-phosphatase activity	0.00E+00
7	GO:0001872: (1->3)-beta-D-glucan binding	1.27E-04
8	GO:0004016: adenylate cyclase activity	6.58E-04
9	GO:0004400: histidinol-phosphate transaminase activity	6.58E-04
10	GO:0004632: phosphopantothenate--cysteine ligase activity	6.58E-04
11	GO:0051777: ent-kaurenoate oxidase activity	6.58E-04
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.58E-04
13	GO:0004156: dihydropteroate synthase activity	6.58E-04
14	GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	6.58E-04
15	GO:0005290: L-histidine transmembrane transporter activity	6.58E-04
16	GO:0003867: 4-aminobutyrate transaminase activity	6.58E-04
17	GO:0004071: aspartate-ammonia ligase activity	6.58E-04
18	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	6.58E-04
19	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	6.58E-04
20	GO:0052381: tRNA dimethylallyltransferase activity	6.58E-04
21	GO:0004830: tryptophan-tRNA ligase activity	6.58E-04
22	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.58E-04
23	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	8.31E-04
24	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.05E-03
25	GO:0016415: octanoyltransferase activity	1.42E-03
26	GO:0102083: 7,8-dihydromonapterin aldolase activity	1.42E-03
27	GO:0052832: inositol monophosphate 3-phosphatase activity	1.42E-03
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.42E-03
29	GO:0008805: carbon-monoxide oxygenase activity	1.42E-03
30	GO:0008934: inositol monophosphate 1-phosphatase activity	1.42E-03
31	GO:0008493: tetracycline transporter activity	1.42E-03
32	GO:0052833: inositol monophosphate 4-phosphatase activity	1.42E-03
33	GO:0000064: L-ornithine transmembrane transporter activity	1.42E-03
34	GO:0004150: dihydroneopterin aldolase activity	1.42E-03
35	GO:0015929: hexosaminidase activity	1.42E-03
36	GO:0004563: beta-N-acetylhexosaminidase activity	1.42E-03
37	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.42E-03
38	GO:0009884: cytokinin receptor activity	1.42E-03
39	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.42E-03
40	GO:0017118: lipoyltransferase activity	1.42E-03
41	GO:0004519: endonuclease activity	1.58E-03
42	GO:0009672: auxin:proton symporter activity	1.65E-03
43	GO:0004805: trehalose-phosphatase activity	1.93E-03
44	GO:0017150: tRNA dihydrouridine synthase activity	2.34E-03
45	GO:0016805: dipeptidase activity	2.34E-03
46	GO:0005034: osmosensor activity	2.34E-03
47	GO:0010329: auxin efflux transmembrane transporter activity	2.92E-03
48	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.02E-03
49	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.30E-03
50	GO:0004650: polygalacturonase activity	3.34E-03
51	GO:0015189: L-lysine transmembrane transporter activity	3.40E-03
52	GO:0015181: arginine transmembrane transporter activity	3.40E-03
53	GO:0004845: uracil phosphoribosyltransferase activity	4.58E-03
54	GO:0004345: glucose-6-phosphate dehydrogenase activity	4.58E-03
55	GO:0005253: anion channel activity	4.58E-03
56	GO:0046556: alpha-L-arabinofuranosidase activity	4.58E-03
57	GO:0016279: protein-lysine N-methyltransferase activity	4.58E-03
58	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	5.25E-03
59	GO:0008725: DNA-3-methyladenine glycosylase activity	5.89E-03
60	GO:0004523: RNA-DNA hybrid ribonuclease activity	5.89E-03
61	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.89E-03
62	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	5.89E-03
63	GO:0003723: RNA binding	5.98E-03
64	GO:2001070: starch binding	7.31E-03
65	GO:0004605: phosphatidate cytidylyltransferase activity	7.31E-03
66	GO:1990714: hydroxyproline O-galactosyltransferase activity	7.31E-03
67	GO:0008519: ammonium transmembrane transporter activity	7.31E-03
68	GO:0005247: voltage-gated chloride channel activity	7.31E-03
69	GO:0004124: cysteine synthase activity	8.84E-03
70	GO:0008195: phosphatidate phosphatase activity	8.84E-03
71	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.84E-03
72	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.84E-03
73	GO:0004849: uridine kinase activity	8.84E-03
74	GO:0004656: procollagen-proline 4-dioxygenase activity	8.84E-03
75	GO:0019900: kinase binding	8.84E-03
76	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.14E-02
77	GO:0004518: nuclease activity	1.22E-02
78	GO:0008173: RNA methyltransferase activity	1.41E-02
79	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.41E-02
80	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.60E-02
81	GO:0030247: polysaccharide binding	1.96E-02
82	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.96E-02
83	GO:0004673: protein histidine kinase activity	2.01E-02
84	GO:0044212: transcription regulatory region DNA binding	2.09E-02
85	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.23E-02
86	GO:0043565: sequence-specific DNA binding	2.31E-02
87	GO:0016829: lyase activity	2.46E-02
88	GO:0005262: calcium channel activity	2.69E-02
89	GO:0009982: pseudouridine synthase activity	2.69E-02
90	GO:0003725: double-stranded RNA binding	2.69E-02
91	GO:0004022: alcohol dehydrogenase (NAD) activity	2.69E-02
92	GO:0004089: carbonate dehydratase activity	2.69E-02
93	GO:0031072: heat shock protein binding	2.69E-02
94	GO:0000155: phosphorelay sensor kinase activity	2.69E-02
95	GO:0004871: signal transducer activity	3.32E-02
96	GO:0031418: L-ascorbic acid binding	3.70E-02
97	GO:0043621: protein self-association	3.83E-02
98	GO:0043424: protein histidine kinase binding	3.97E-02
99	GO:0005345: purine nucleobase transmembrane transporter activity	3.97E-02
100	GO:0035251: UDP-glucosyltransferase activity	4.25E-02
101	GO:0004707: MAP kinase activity	4.25E-02
102	GO:0004176: ATP-dependent peptidase activity	4.25E-02
103	GO:0033612: receptor serine/threonine kinase binding	4.25E-02
104	GO:0008408: 3'-5' exonuclease activity	4.25E-02