Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G29500

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
3GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0009606: tropism0.00E+00
6GO:1903224: regulation of endodermal cell differentiation0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0035884: arabinan biosynthetic process0.00E+00
9GO:0051958: methotrexate transport0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0006399: tRNA metabolic process0.00E+00
14GO:0015843: methylammonium transport0.00E+00
15GO:0031222: arabinan catabolic process0.00E+00
16GO:0009734: auxin-activated signaling pathway1.30E-10
17GO:0009733: response to auxin8.01E-09
18GO:0046620: regulation of organ growth2.28E-08
19GO:0009658: chloroplast organization2.80E-08
20GO:0040008: regulation of growth2.89E-06
21GO:0009926: auxin polar transport4.89E-05
22GO:0006760: folic acid-containing compound metabolic process7.33E-05
23GO:0009657: plastid organization9.52E-05
24GO:0000373: Group II intron splicing1.27E-04
25GO:0046656: folic acid biosynthetic process2.56E-04
26GO:0032502: developmental process3.48E-04
27GO:0009828: plant-type cell wall loosening4.26E-04
28GO:0010020: chloroplast fission4.33E-04
29GO:0042793: transcription from plastid promoter5.33E-04
30GO:2000067: regulation of root morphogenesis7.05E-04
31GO:0046654: tetrahydrofolate biosynthetic process7.05E-04
32GO:0042659: regulation of cell fate specification7.31E-04
33GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process7.31E-04
34GO:0090558: plant epidermis development7.31E-04
35GO:0043266: regulation of potassium ion transport7.31E-04
36GO:0010480: microsporocyte differentiation7.31E-04
37GO:0042371: vitamin K biosynthetic process7.31E-04
38GO:2000021: regulation of ion homeostasis7.31E-04
39GO:0035987: endodermal cell differentiation7.31E-04
40GO:0043609: regulation of carbon utilization7.31E-04
41GO:0006436: tryptophanyl-tRNA aminoacylation7.31E-04
42GO:0000066: mitochondrial ornithine transport7.31E-04
43GO:0050801: ion homeostasis7.31E-04
44GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.60E-04
45GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.07E-03
46GO:0042255: ribosome assembly1.12E-03
47GO:0009742: brassinosteroid mediated signaling pathway1.25E-03
48GO:0006002: fructose 6-phosphate metabolic process1.36E-03
49GO:0007389: pattern specification process1.36E-03
50GO:2000123: positive regulation of stomatal complex development1.58E-03
51GO:0060359: response to ammonium ion1.58E-03
52GO:1902326: positive regulation of chlorophyll biosynthetic process1.58E-03
53GO:0070981: L-asparagine biosynthetic process1.58E-03
54GO:2000039: regulation of trichome morphogenesis1.58E-03
55GO:0018026: peptidyl-lysine monomethylation1.58E-03
56GO:0071497: cellular response to freezing1.58E-03
57GO:1904143: positive regulation of carotenoid biosynthetic process1.58E-03
58GO:0006529: asparagine biosynthetic process1.58E-03
59GO:0071555: cell wall organization1.85E-03
60GO:0042761: very long-chain fatty acid biosynthetic process1.94E-03
61GO:0007275: multicellular organism development2.18E-03
62GO:0010583: response to cyclopentenone2.29E-03
63GO:0010447: response to acidic pH2.61E-03
64GO:0051127: positive regulation of actin nucleation2.61E-03
65GO:0090708: specification of plant organ axis polarity2.61E-03
66GO:0006954: inflammatory response2.61E-03
67GO:0006000: fructose metabolic process2.61E-03
68GO:0031145: anaphase-promoting complex-dependent catabolic process2.61E-03
69GO:0043157: response to cation stress2.61E-03
70GO:0010015: root morphogenesis2.62E-03
71GO:0010252: auxin homeostasis2.70E-03
72GO:0010027: thylakoid membrane organization3.38E-03
73GO:0009767: photosynthetic electron transport chain3.43E-03
74GO:0030071: regulation of mitotic metaphase/anaphase transition3.80E-03
75GO:0051639: actin filament network formation3.80E-03
76GO:0010239: chloroplast mRNA processing3.80E-03
77GO:0044211: CTP salvage3.80E-03
78GO:0009226: nucleotide-sugar biosynthetic process3.80E-03
79GO:0015696: ammonium transport3.80E-03
80GO:0046739: transport of virus in multicellular host3.80E-03
81GO:2000904: regulation of starch metabolic process3.80E-03
82GO:0051289: protein homotetramerization3.80E-03
83GO:0016556: mRNA modification3.80E-03
84GO:0043572: plastid fission3.80E-03
85GO:2001141: regulation of RNA biosynthetic process3.80E-03
86GO:1902476: chloride transmembrane transport3.80E-03
87GO:0007231: osmosensory signaling pathway3.80E-03
88GO:0010207: photosystem II assembly3.87E-03
89GO:0051764: actin crosslink formation5.13E-03
90GO:0015846: polyamine transport5.13E-03
91GO:0030104: water homeostasis5.13E-03
92GO:0072488: ammonium transmembrane transport5.13E-03
93GO:0033500: carbohydrate homeostasis5.13E-03
94GO:2000038: regulation of stomatal complex development5.13E-03
95GO:0044206: UMP salvage5.13E-03
96GO:0006346: methylation-dependent chromatin silencing5.13E-03
97GO:1901141: regulation of lignin biosynthetic process5.13E-03
98GO:0005992: trehalose biosynthetic process5.39E-03
99GO:0009826: unidimensional cell growth6.03E-03
100GO:0010438: cellular response to sulfur starvation6.60E-03
101GO:0010158: abaxial cell fate specification6.60E-03
102GO:0032876: negative regulation of DNA endoreduplication6.60E-03
103GO:0010375: stomatal complex patterning6.60E-03
104GO:0009904: chloroplast accumulation movement6.60E-03
105GO:0006544: glycine metabolic process6.60E-03
106GO:0010236: plastoquinone biosynthetic process6.60E-03
107GO:0009107: lipoate biosynthetic process6.60E-03
108GO:1902183: regulation of shoot apical meristem development6.60E-03
109GO:0016123: xanthophyll biosynthetic process6.60E-03
110GO:0006730: one-carbon metabolic process7.19E-03
111GO:0006839: mitochondrial transport7.65E-03
112GO:0010082: regulation of root meristem growth7.86E-03
113GO:0009959: negative gravitropism8.20E-03
114GO:0006655: phosphatidylglycerol biosynthetic process8.20E-03
115GO:0010315: auxin efflux8.20E-03
116GO:0006206: pyrimidine nucleobase metabolic process8.20E-03
117GO:0032973: amino acid export8.20E-03
118GO:0018258: protein O-linked glycosylation via hydroxyproline8.20E-03
119GO:0006563: L-serine metabolic process8.20E-03
120GO:0010405: arabinogalactan protein metabolic process8.20E-03
121GO:0071470: cellular response to osmotic stress9.92E-03
122GO:0042372: phylloquinone biosynthetic process9.92E-03
123GO:0017148: negative regulation of translation9.92E-03
124GO:0009942: longitudinal axis specification9.92E-03
125GO:1901259: chloroplast rRNA processing9.92E-03
126GO:0009903: chloroplast avoidance movement9.92E-03
127GO:0030488: tRNA methylation9.92E-03
128GO:0080086: stamen filament development9.92E-03
129GO:0008033: tRNA processing1.00E-02
130GO:0009741: response to brassinosteroid1.08E-02
131GO:0007623: circadian rhythm1.14E-02
132GO:0009646: response to absence of light1.17E-02
133GO:0007050: cell cycle arrest1.18E-02
134GO:0009772: photosynthetic electron transport in photosystem II1.18E-02
135GO:0043090: amino acid import1.18E-02
136GO:0006821: chloride transport1.18E-02
137GO:0010050: vegetative phase change1.18E-02
138GO:0048437: floral organ development1.18E-02
139GO:0006400: tRNA modification1.18E-02
140GO:0030307: positive regulation of cell growth1.18E-02
141GO:0009610: response to symbiotic fungus1.18E-02
142GO:0009451: RNA modification1.18E-02
143GO:0009664: plant-type cell wall organization1.20E-02
144GO:0009739: response to gibberellin1.35E-02
145GO:0048564: photosystem I assembly1.37E-02
146GO:0010439: regulation of glucosinolate biosynthetic process1.37E-02
147GO:0001522: pseudouridine synthesis1.37E-02
148GO:0009850: auxin metabolic process1.37E-02
149GO:0009704: de-etiolation1.37E-02
150GO:0032875: regulation of DNA endoreduplication1.37E-02
151GO:0006353: DNA-templated transcription, termination1.37E-02
152GO:0048766: root hair initiation1.37E-02
153GO:0070413: trehalose metabolism in response to stress1.37E-02
154GO:0055075: potassium ion homeostasis1.37E-02
155GO:0009630: gravitropism1.44E-02
156GO:0008380: RNA splicing1.49E-02
157GO:0071482: cellular response to light stimulus1.58E-02
158GO:0009827: plant-type cell wall modification1.58E-02
159GO:0010497: plasmodesmata-mediated intercellular transport1.58E-02
160GO:0006526: arginine biosynthetic process1.58E-02
161GO:0009051: pentose-phosphate shunt, oxidative branch1.80E-02
162GO:0080144: amino acid homeostasis1.80E-02
163GO:2000024: regulation of leaf development1.80E-02
164GO:0000902: cell morphogenesis1.80E-02
165GO:0009416: response to light stimulus1.83E-02
166GO:0009638: phototropism2.02E-02
167GO:0035999: tetrahydrofolate interconversion2.02E-02
168GO:2000280: regulation of root development2.02E-02
169GO:1900865: chloroplast RNA modification2.02E-02
170GO:0031425: chloroplast RNA processing2.02E-02
171GO:0009299: mRNA transcription2.26E-02
172GO:0006535: cysteine biosynthetic process from serine2.26E-02
173GO:0009641: shade avoidance2.26E-02
174GO:0006949: syncytium formation2.26E-02
175GO:0006259: DNA metabolic process2.26E-02
176GO:0010411: xyloglucan metabolic process2.30E-02
177GO:0006816: calcium ion transport2.51E-02
178GO:0006265: DNA topological change2.51E-02
179GO:0009773: photosynthetic electron transport in photosystem I2.51E-02
180GO:0009682: induced systemic resistance2.51E-02
181GO:1903507: negative regulation of nucleic acid-templated transcription2.51E-02
182GO:0006352: DNA-templated transcription, initiation2.51E-02
183GO:0048229: gametophyte development2.51E-02
184GO:0000160: phosphorelay signal transduction system2.68E-02
185GO:0016024: CDP-diacylglycerol biosynthetic process2.76E-02
186GO:0045037: protein import into chloroplast stroma2.76E-02
187GO:0010582: floral meristem determinacy2.76E-02
188GO:0006357: regulation of transcription from RNA polymerase II promoter2.96E-02
189GO:2000012: regulation of auxin polar transport3.02E-02
190GO:0010628: positive regulation of gene expression3.02E-02
191GO:0009785: blue light signaling pathway3.02E-02
192GO:0006006: glucose metabolic process3.02E-02
193GO:0009691: cytokinin biosynthetic process3.02E-02
194GO:0030036: actin cytoskeleton organization3.02E-02
195GO:0010075: regulation of meristem growth3.02E-02
196GO:0009725: response to hormone3.02E-02
197GO:0005975: carbohydrate metabolic process3.09E-02
198GO:0009637: response to blue light3.24E-02
199GO:0010143: cutin biosynthetic process3.30E-02
200GO:0006541: glutamine metabolic process3.30E-02
201GO:0009934: regulation of meristem structural organization3.30E-02
202GO:0034599: cellular response to oxidative stress3.39E-02
203GO:0010039: response to iron ion3.58E-02
204GO:0090351: seedling development3.58E-02
205GO:0070588: calcium ion transmembrane transport3.58E-02
206GO:0010025: wax biosynthetic process3.86E-02
207GO:0006071: glycerol metabolic process3.86E-02
208GO:0006833: water transport3.86E-02
209GO:0019344: cysteine biosynthetic process4.16E-02
210GO:0009944: polarity specification of adaxial/abaxial axis4.16E-02
211GO:0000027: ribosomal large subunit assembly4.16E-02
212GO:0030150: protein import into mitochondrial matrix4.16E-02
213GO:0051017: actin filament bundle assembly4.16E-02
214GO:0010114: response to red light4.17E-02
215GO:0042546: cell wall biogenesis4.34E-02
216GO:0051302: regulation of cell division4.46E-02
217GO:0006418: tRNA aminoacylation for protein translation4.46E-02
218GO:0006825: copper ion transport4.46E-02
219GO:0006306: DNA methylation4.77E-02
220GO:0016998: cell wall macromolecule catabolic process4.77E-02
RankGO TermAdjusted P value
1GO:0015231: 5-formyltetrahydrofolate transporter activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0019808: polyamine binding0.00E+00
4GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0015350: methotrexate transporter activity0.00E+00
7GO:0004056: argininosuccinate lyase activity0.00E+00
8GO:0004358: glutamate N-acetyltransferase activity0.00E+00
9GO:0070009: serine-type aminopeptidase activity0.00E+00
10GO:0102083: 7,8-dihydromonapterin aldolase activity2.27E-05
11GO:0004150: dihydroneopterin aldolase activity2.27E-05
12GO:0050139: nicotinate-N-glucosyltransferase activity7.31E-04
13GO:0051777: ent-kaurenoate oxidase activity7.31E-04
14GO:0005290: L-histidine transmembrane transporter activity7.31E-04
15GO:0004008: copper-exporting ATPase activity7.31E-04
16GO:0003867: 4-aminobutyrate transaminase activity7.31E-04
17GO:0004071: aspartate-ammonia ligase activity7.31E-04
18GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.31E-04
19GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.31E-04
20GO:0052381: tRNA dimethylallyltransferase activity7.31E-04
21GO:0004830: tryptophan-tRNA ligase activity7.31E-04
22GO:0003727: single-stranded RNA binding1.19E-03
23GO:0016415: octanoyltransferase activity1.58E-03
24GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.58E-03
25GO:0008805: carbon-monoxide oxygenase activity1.58E-03
26GO:0000064: L-ornithine transmembrane transporter activity1.58E-03
27GO:0008517: folic acid transporter activity1.58E-03
28GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.58E-03
29GO:0017118: lipoyltransferase activity1.58E-03
30GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.58E-03
31GO:0043425: bHLH transcription factor binding1.58E-03
32GO:0009672: auxin:proton symporter activity1.94E-03
33GO:0004805: trehalose-phosphatase activity2.27E-03
34GO:0070330: aromatase activity2.61E-03
35GO:0052722: fatty acid in-chain hydroxylase activity2.61E-03
36GO:0017150: tRNA dihydrouridine synthase activity2.61E-03
37GO:0004557: alpha-galactosidase activity2.61E-03
38GO:0052692: raffinose alpha-galactosidase activity2.61E-03
39GO:0005089: Rho guanyl-nucleotide exchange factor activity2.62E-03
40GO:0004022: alcohol dehydrogenase (NAD) activity3.43E-03
41GO:0010329: auxin efflux transmembrane transporter activity3.43E-03
42GO:0001872: (1->3)-beta-D-glucan binding3.80E-03
43GO:0015189: L-lysine transmembrane transporter activity3.80E-03
44GO:0015181: arginine transmembrane transporter activity3.80E-03
45GO:0043023: ribosomal large subunit binding3.80E-03
46GO:0004650: polygalacturonase activity4.29E-03
47GO:0004345: glucose-6-phosphate dehydrogenase activity5.13E-03
48GO:0016987: sigma factor activity5.13E-03
49GO:0005253: anion channel activity5.13E-03
50GO:0046556: alpha-L-arabinofuranosidase activity5.13E-03
51GO:0004659: prenyltransferase activity5.13E-03
52GO:0016279: protein-lysine N-methyltransferase activity5.13E-03
53GO:0001053: plastid sigma factor activity5.13E-03
54GO:0004845: uracil phosphoribosyltransferase activity5.13E-03
55GO:0004372: glycine hydroxymethyltransferase activity6.60E-03
56GO:0016773: phosphotransferase activity, alcohol group as acceptor6.60E-03
57GO:0018685: alkane 1-monooxygenase activity6.60E-03
58GO:0019843: rRNA binding6.95E-03
59GO:0004519: endonuclease activity7.09E-03
60GO:0004605: phosphatidate cytidylyltransferase activity8.20E-03
61GO:1990714: hydroxyproline O-galactosyltransferase activity8.20E-03
62GO:0008519: ammonium transmembrane transporter activity8.20E-03
63GO:0005247: voltage-gated chloride channel activity8.20E-03
64GO:2001070: starch binding8.20E-03
65GO:0004124: cysteine synthase activity9.92E-03
66GO:0008195: phosphatidate phosphatase activity9.92E-03
67GO:0043621: protein self-association9.92E-03
68GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.92E-03
69GO:0004849: uridine kinase activity9.92E-03
70GO:0003723: RNA binding1.07E-02
71GO:0003872: 6-phosphofructokinase activity1.18E-02
72GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.29E-02
73GO:0016762: xyloglucan:xyloglucosyl transferase activity1.34E-02
74GO:0043022: ribosome binding1.37E-02
75GO:0000156: phosphorelay response regulator activity1.53E-02
76GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.55E-02
77GO:0005375: copper ion transmembrane transporter activity1.58E-02
78GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.58E-02
79GO:0008889: glycerophosphodiester phosphodiesterase activity1.80E-02
80GO:0016798: hydrolase activity, acting on glycosyl bonds2.30E-02
81GO:0000976: transcription regulatory region sequence-specific DNA binding2.76E-02
82GO:0044212: transcription regulatory region DNA binding2.92E-02
83GO:0009982: pseudouridine synthase activity3.02E-02
84GO:0016829: lyase activity3.02E-02
85GO:0015266: protein channel activity3.02E-02
86GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.02E-02
87GO:0004089: carbonate dehydratase activity3.02E-02
88GO:0031072: heat shock protein binding3.02E-02
89GO:0005262: calcium channel activity3.02E-02
90GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.30E-02
91GO:0003993: acid phosphatase activity3.39E-02
92GO:0005215: transporter activity3.58E-02
93GO:0003714: transcription corepressor activity4.16E-02
94GO:0005345: purine nucleobase transmembrane transporter activity4.46E-02
95GO:0004707: MAP kinase activity4.77E-02
96GO:0004176: ATP-dependent peptidase activity4.77E-02
97GO:0033612: receptor serine/threonine kinase binding4.77E-02
98GO:0008408: 3'-5' exonuclease activity4.77E-02
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Gene type



Gene DE type