co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0009606: tropism	0.00E+00
3	GO:0007638: mechanosensory behavior	0.00E+00
4	GO:0035884: arabinan biosynthetic process	0.00E+00
5	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
6	GO:0097164: ammonium ion metabolic process	0.00E+00
7	GO:0070455: positive regulation of heme biosynthetic process	0.00E+00
8	GO:0045184: establishment of protein localization	0.00E+00
9	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
10	GO:0015843: methylammonium transport	0.00E+00
11	GO:0031222: arabinan catabolic process	0.00E+00
12	GO:0070979: protein K11-linked ubiquitination	0.00E+00
13	GO:0046719: regulation by virus of viral protein levels in host cell	0.00E+00
14	GO:1901698: response to nitrogen compound	0.00E+00
15	GO:0042793: transcription from plastid promoter	1.26E-07
16	GO:0009733: response to auxin	2.90E-07
17	GO:0046620: regulation of organ growth	9.62E-07
18	GO:0009734: auxin-activated signaling pathway	1.17E-06
19	GO:0040008: regulation of growth	7.43E-05
20	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.08E-04
21	GO:2000038: regulation of stomatal complex development	1.95E-04
22	GO:0046656: folic acid biosynthetic process	1.95E-04
23	GO:0009926: auxin polar transport	2.10E-04
24	GO:0032876: negative regulation of DNA endoreduplication	2.95E-04
25	GO:0046654: tetrahydrofolate biosynthetic process	5.47E-04
26	GO:0090558: plant epidermis development	6.16E-04
27	GO:1903866: palisade mesophyll development	6.16E-04
28	GO:0010480: microsporocyte differentiation	6.16E-04
29	GO:0035987: endodermal cell differentiation	6.16E-04
30	GO:0043609: regulation of carbon utilization	6.16E-04
31	GO:0006436: tryptophanyl-tRNA aminoacylation	6.16E-04
32	GO:0000066: mitochondrial ornithine transport	6.16E-04
33	GO:0034757: negative regulation of iron ion transport	6.16E-04
34	GO:0042659: regulation of cell fate specification	6.16E-04
35	GO:0000160: phosphorelay signal transduction system	6.19E-04
36	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	7.73E-04
37	GO:0000105: histidine biosynthetic process	8.71E-04
38	GO:0007389: pattern specification process	1.06E-03
39	GO:0009658: chloroplast organization	1.07E-03
40	GO:0009416: response to light stimulus	1.21E-03
41	GO:0000373: Group II intron splicing	1.26E-03
42	GO:0010569: regulation of double-strand break repair via homologous recombination	1.32E-03
43	GO:0070981: L-asparagine biosynthetic process	1.32E-03
44	GO:0010271: regulation of chlorophyll catabolic process	1.32E-03
45	GO:0018026: peptidyl-lysine monomethylation	1.32E-03
46	GO:0071497: cellular response to freezing	1.32E-03
47	GO:0009662: etioplast organization	1.32E-03
48	GO:1900033: negative regulation of trichome patterning	1.32E-03
49	GO:0080009: mRNA methylation	1.32E-03
50	GO:0006529: asparagine biosynthetic process	1.32E-03
51	GO:2000123: positive regulation of stomatal complex development	1.32E-03
52	GO:0006949: syncytium formation	1.75E-03
53	GO:0009736: cytokinin-activated signaling pathway	1.91E-03
54	GO:0010252: auxin homeostasis	1.93E-03
55	GO:0009828: plant-type cell wall loosening	1.93E-03
56	GO:0090391: granum assembly	2.18E-03
57	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.18E-03
58	GO:0071705: nitrogen compound transport	2.18E-03
59	GO:0001578: microtubule bundle formation	2.18E-03
60	GO:0006760: folic acid-containing compound metabolic process	2.18E-03
61	GO:0090708: specification of plant organ axis polarity	2.18E-03
62	GO:0006000: fructose metabolic process	2.18E-03
63	GO:0080117: secondary growth	2.18E-03
64	GO:0009739: response to gibberellin	2.28E-03
65	GO:0010027: thylakoid membrane organization	2.42E-03
66	GO:0009767: photosynthetic electron transport chain	2.64E-03
67	GO:0015696: ammonium transport	3.17E-03
68	GO:0046739: transport of virus in multicellular host	3.17E-03
69	GO:2000904: regulation of starch metabolic process	3.17E-03
70	GO:0051289: protein homotetramerization	3.17E-03
71	GO:0043572: plastid fission	3.17E-03
72	GO:1902476: chloride transmembrane transport	3.17E-03
73	GO:0051513: regulation of monopolar cell growth	3.17E-03
74	GO:0007231: osmosensory signaling pathway	3.17E-03
75	GO:0030071: regulation of mitotic metaphase/anaphase transition	3.17E-03
76	GO:0051639: actin filament network formation	3.17E-03
77	GO:0044211: CTP salvage	3.17E-03
78	GO:0009800: cinnamic acid biosynthetic process	3.17E-03
79	GO:0033014: tetrapyrrole biosynthetic process	3.17E-03
80	GO:0006468: protein phosphorylation	3.99E-03
81	GO:0005992: trehalose biosynthetic process	4.15E-03
82	GO:0006021: inositol biosynthetic process	4.28E-03
83	GO:0044206: UMP salvage	4.28E-03
84	GO:0006346: methylation-dependent chromatin silencing	4.28E-03
85	GO:1901141: regulation of lignin biosynthetic process	4.28E-03
86	GO:0006479: protein methylation	4.28E-03
87	GO:0048629: trichome patterning	4.28E-03
88	GO:0051764: actin crosslink formation	4.28E-03
89	GO:0051322: anaphase	4.28E-03
90	GO:0071249: cellular response to nitrate	4.28E-03
91	GO:0072488: ammonium transmembrane transport	4.28E-03
92	GO:0030104: water homeostasis	4.28E-03
93	GO:0033500: carbohydrate homeostasis	4.28E-03
94	GO:0006544: glycine metabolic process	5.49E-03
95	GO:0009904: chloroplast accumulation movement	5.49E-03
96	GO:0009107: lipoate biosynthetic process	5.49E-03
97	GO:1902183: regulation of shoot apical meristem development	5.49E-03
98	GO:0016123: xanthophyll biosynthetic process	5.49E-03
99	GO:0010438: cellular response to sulfur starvation	5.49E-03
100	GO:0030308: negative regulation of cell growth	5.49E-03
101	GO:0010375: stomatal complex patterning	5.49E-03
102	GO:0010082: regulation of root meristem growth	6.03E-03
103	GO:0006357: regulation of transcription from RNA polymerase II promoter	6.22E-03
104	GO:1902456: regulation of stomatal opening	6.81E-03
105	GO:0048831: regulation of shoot system development	6.81E-03
106	GO:0010315: auxin efflux	6.81E-03
107	GO:0006559: L-phenylalanine catabolic process	6.81E-03
108	GO:0006206: pyrimidine nucleobase metabolic process	6.81E-03
109	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.81E-03
110	GO:0006563: L-serine metabolic process	6.81E-03
111	GO:0010405: arabinogalactan protein metabolic process	6.81E-03
112	GO:0009913: epidermal cell differentiation	6.81E-03
113	GO:0006655: phosphatidylglycerol biosynthetic process	6.81E-03
114	GO:0010087: phloem or xylem histogenesis	7.70E-03
115	GO:0009451: RNA modification	7.89E-03
116	GO:0009942: longitudinal axis specification	8.24E-03
117	GO:0048509: regulation of meristem development	8.24E-03
118	GO:0009903: chloroplast avoidance movement	8.24E-03
119	GO:0030488: tRNA methylation	8.24E-03
120	GO:2000037: regulation of stomatal complex patterning	8.24E-03
121	GO:2000067: regulation of root morphogenesis	8.24E-03
122	GO:0071470: cellular response to osmotic stress	8.24E-03
123	GO:0009664: plant-type cell wall organization	8.57E-03
124	GO:0009396: folic acid-containing compound biosynthetic process	9.76E-03
125	GO:0030307: positive regulation of cell growth	9.76E-03
126	GO:0010103: stomatal complex morphogenesis	9.76E-03
127	GO:0009610: response to symbiotic fungus	9.76E-03
128	GO:0007050: cell cycle arrest	9.76E-03
129	GO:0006821: chloride transport	9.76E-03
130	GO:0048437: floral organ development	9.76E-03
131	GO:0010583: response to cyclopentenone	1.10E-02
132	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.14E-02
133	GO:0032875: regulation of DNA endoreduplication	1.14E-02
134	GO:0048766: root hair initiation	1.14E-02
135	GO:0055075: potassium ion homeostasis	1.14E-02
136	GO:0009751: response to salicylic acid	1.14E-02
137	GO:0010439: regulation of glucosinolate biosynthetic process	1.14E-02
138	GO:0001522: pseudouridine synthesis	1.14E-02
139	GO:0010497: plasmodesmata-mediated intercellular transport	1.31E-02
140	GO:0006002: fructose 6-phosphate metabolic process	1.31E-02
141	GO:0007275: multicellular organism development	1.35E-02
142	GO:0009826: unidimensional cell growth	1.40E-02
143	GO:2000024: regulation of leaf development	1.49E-02
144	GO:0006783: heme biosynthetic process	1.49E-02
145	GO:0000902: cell morphogenesis	1.49E-02
146	GO:0009051: pentose-phosphate shunt, oxidative branch	1.49E-02
147	GO:0009742: brassinosteroid mediated signaling pathway	1.59E-02
148	GO:0031425: chloroplast RNA processing	1.67E-02
149	GO:0009638: phototropism	1.67E-02
150	GO:0035999: tetrahydrofolate interconversion	1.67E-02
151	GO:0042761: very long-chain fatty acid biosynthetic process	1.67E-02
152	GO:2000280: regulation of root development	1.67E-02
153	GO:0010411: xyloglucan metabolic process	1.77E-02
154	GO:0009723: response to ethylene	1.84E-02
155	GO:0009641: shade avoidance	1.87E-02
156	GO:0048481: plant ovule development	1.96E-02
157	GO:0030154: cell differentiation	2.02E-02
158	GO:0080167: response to karrikin	2.04E-02
159	GO:0009773: photosynthetic electron transport in photosystem I	2.07E-02
160	GO:0009682: induced systemic resistance	2.07E-02
161	GO:0048229: gametophyte development	2.07E-02
162	GO:0010015: root morphogenesis	2.07E-02
163	GO:0006816: calcium ion transport	2.07E-02
164	GO:0015706: nitrate transport	2.28E-02
165	GO:0016024: CDP-diacylglycerol biosynthetic process	2.28E-02
166	GO:0008361: regulation of cell size	2.28E-02
167	GO:0006790: sulfur compound metabolic process	2.28E-02
168	GO:0010628: positive regulation of gene expression	2.50E-02
169	GO:0009785: blue light signaling pathway	2.50E-02
170	GO:0009691: cytokinin biosynthetic process	2.50E-02
171	GO:0006006: glucose metabolic process	2.50E-02
172	GO:0010075: regulation of meristem growth	2.50E-02
173	GO:2000012: regulation of auxin polar transport	2.50E-02
174	GO:0010207: photosystem II assembly	2.73E-02
175	GO:0010020: chloroplast fission	2.73E-02
176	GO:0009934: regulation of meristem structural organization	2.73E-02
177	GO:0010143: cutin biosynthetic process	2.73E-02
178	GO:0006541: glutamine metabolic process	2.73E-02
179	GO:0006839: mitochondrial transport	2.83E-02
180	GO:0080188: RNA-directed DNA methylation	2.96E-02
181	GO:0010167: response to nitrate	2.96E-02
182	GO:0090351: seedling development	2.96E-02
183	GO:0070588: calcium ion transmembrane transport	2.96E-02
184	GO:0046854: phosphatidylinositol phosphorylation	2.96E-02
185	GO:0006071: glycerol metabolic process	3.20E-02
186	GO:0006833: water transport	3.20E-02
187	GO:0010114: response to red light	3.21E-02
188	GO:0042546: cell wall biogenesis	3.34E-02
189	GO:0000027: ribosomal large subunit assembly	3.44E-02
190	GO:0080147: root hair cell development	3.44E-02
191	GO:0051017: actin filament bundle assembly	3.44E-02
192	GO:0009944: polarity specification of adaxial/abaxial axis	3.44E-02
193	GO:0007166: cell surface receptor signaling pathway	3.48E-02
194	GO:0010073: meristem maintenance	3.69E-02
195	GO:0051302: regulation of cell division	3.69E-02
196	GO:0006418: tRNA aminoacylation for protein translation	3.69E-02
197	GO:0016998: cell wall macromolecule catabolic process	3.95E-02
198	GO:0006334: nucleosome assembly	3.95E-02
199	GO:0006306: DNA methylation	3.95E-02
200	GO:0009753: response to jasmonic acid	4.01E-02
201	GO:0006730: one-carbon metabolic process	4.21E-02
202	GO:0031348: negative regulation of defense response	4.21E-02
203	GO:0071215: cellular response to abscisic acid stimulus	4.48E-02
204	GO:0009625: response to insect	4.48E-02
205	GO:0006284: base-excision repair	4.75E-02
206	GO:0016310: phosphorylation	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0004401: histidinol-phosphatase activity	0.00E+00
4	GO:0070009: serine-type aminopeptidase activity	0.00E+00
5	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
6	GO:0071633: dihydroceramidase activity	0.00E+00
7	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.16E-04
8	GO:0004156: dihydropteroate synthase activity	6.16E-04
9	GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	6.16E-04
10	GO:0016274: protein-arginine N-methyltransferase activity	6.16E-04
11	GO:0005290: L-histidine transmembrane transporter activity	6.16E-04
12	GO:0004071: aspartate-ammonia ligase activity	6.16E-04
13	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	6.16E-04
14	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	6.16E-04
15	GO:0052381: tRNA dimethylallyltransferase activity	6.16E-04
16	GO:0004830: tryptophan-tRNA ligase activity	6.16E-04
17	GO:0010347: L-galactose-1-phosphate phosphatase activity	6.16E-04
18	GO:0004016: adenylate cyclase activity	6.16E-04
19	GO:0004400: histidinol-phosphate transaminase activity	6.16E-04
20	GO:0008805: carbon-monoxide oxygenase activity	1.32E-03
21	GO:0008934: inositol monophosphate 1-phosphatase activity	1.32E-03
22	GO:0004150: dihydroneopterin aldolase activity	1.32E-03
23	GO:0052833: inositol monophosphate 4-phosphatase activity	1.32E-03
24	GO:0000064: L-ornithine transmembrane transporter activity	1.32E-03
25	GO:0015929: hexosaminidase activity	1.32E-03
26	GO:0004563: beta-N-acetylhexosaminidase activity	1.32E-03
27	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.32E-03
28	GO:0009884: cytokinin receptor activity	1.32E-03
29	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.32E-03
30	GO:0017118: lipoyltransferase activity	1.32E-03
31	GO:0016415: octanoyltransferase activity	1.32E-03
32	GO:0102083: 7,8-dihydromonapterin aldolase activity	1.32E-03
33	GO:0052832: inositol monophosphate 3-phosphatase activity	1.32E-03
34	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.32E-03
35	GO:0009672: auxin:proton symporter activity	1.50E-03
36	GO:0004805: trehalose-phosphatase activity	1.75E-03
37	GO:0000156: phosphorelay response regulator activity	1.78E-03
38	GO:0045548: phenylalanine ammonia-lyase activity	2.18E-03
39	GO:0016805: dipeptidase activity	2.18E-03
40	GO:0005034: osmosensor activity	2.18E-03
41	GO:0070180: large ribosomal subunit rRNA binding	2.18E-03
42	GO:0052722: fatty acid in-chain hydroxylase activity	2.18E-03
43	GO:0017150: tRNA dihydrouridine synthase activity	2.18E-03
44	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.35E-03
45	GO:0010329: auxin efflux transmembrane transporter activity	2.64E-03
46	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.91E-03
47	GO:0015181: arginine transmembrane transporter activity	3.17E-03
48	GO:0001872: (1->3)-beta-D-glucan binding	3.17E-03
49	GO:0015189: L-lysine transmembrane transporter activity	3.17E-03
50	GO:0005253: anion channel activity	4.28E-03
51	GO:0043495: protein anchor	4.28E-03
52	GO:0046556: alpha-L-arabinofuranosidase activity	4.28E-03
53	GO:0016279: protein-lysine N-methyltransferase activity	4.28E-03
54	GO:0004845: uracil phosphoribosyltransferase activity	4.28E-03
55	GO:0004345: glucose-6-phosphate dehydrogenase activity	4.28E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.49E-03
57	GO:0008725: DNA-3-methyladenine glycosylase activity	5.49E-03
58	GO:0004523: RNA-DNA hybrid ribonuclease activity	5.49E-03
59	GO:0004372: glycine hydroxymethyltransferase activity	5.49E-03
60	GO:0016301: kinase activity	5.92E-03
61	GO:0008519: ammonium transmembrane transporter activity	6.81E-03
62	GO:0005247: voltage-gated chloride channel activity	6.81E-03
63	GO:2001070: starch binding	6.81E-03
64	GO:0004605: phosphatidate cytidylyltransferase activity	6.81E-03
65	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.81E-03
66	GO:0004674: protein serine/threonine kinase activity	7.51E-03
67	GO:0003723: RNA binding	8.23E-03
68	GO:0004849: uridine kinase activity	8.24E-03
69	GO:0004656: procollagen-proline 4-dioxygenase activity	8.24E-03
70	GO:0019900: kinase binding	8.24E-03
71	GO:0008195: phosphatidate phosphatase activity	8.24E-03
72	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	8.24E-03
73	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	8.24E-03
74	GO:0004871: signal transducer activity	8.81E-03
75	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.03E-02
76	GO:0004518: nuclease activity	1.10E-02
77	GO:0004519: endonuclease activity	1.35E-02
78	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.49E-02
79	GO:0004672: protein kinase activity	1.59E-02
80	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.77E-02
81	GO:0004673: protein histidine kinase activity	1.87E-02
82	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.07E-02
83	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	2.49E-02
84	GO:0004022: alcohol dehydrogenase (NAD) activity	2.50E-02
85	GO:0004089: carbonate dehydratase activity	2.50E-02
86	GO:0031072: heat shock protein binding	2.50E-02
87	GO:0000155: phosphorelay sensor kinase activity	2.50E-02
88	GO:0005262: calcium channel activity	2.50E-02
89	GO:0009982: pseudouridine synthase activity	2.50E-02
90	GO:0003725: double-stranded RNA binding	2.50E-02
91	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.69E-02
92	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.72E-02
93	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.73E-02
94	GO:0003735: structural constituent of ribosome	3.13E-02
95	GO:0043565: sequence-specific DNA binding	3.42E-02
96	GO:0031418: L-ascorbic acid binding	3.44E-02
97	GO:0043621: protein self-association	3.47E-02
98	GO:0043424: protein histidine kinase binding	3.69E-02
99	GO:0005345: purine nucleobase transmembrane transporter activity	3.69E-02
100	GO:0003676: nucleic acid binding	3.87E-02
101	GO:0004707: MAP kinase activity	3.95E-02
102	GO:0004176: ATP-dependent peptidase activity	3.95E-02
103	GO:0033612: receptor serine/threonine kinase binding	3.95E-02
104	GO:0008408: 3'-5' exonuclease activity	3.95E-02
105	GO:0035251: UDP-glucosyltransferase activity	3.95E-02
106	GO:0044212: transcription regulatory region DNA binding	4.16E-02
107	GO:0003727: single-stranded RNA binding	4.75E-02
108	GO:0008514: organic anion transmembrane transporter activity	4.75E-02
109	GO:0008168: methyltransferase activity	4.81E-02
110	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.89E-02
111	GO:0005215: transporter activity	4.98E-02