Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G29290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072722: response to amitrole0.00E+00
2GO:0010055: atrichoblast differentiation0.00E+00
3GO:0006654: phosphatidic acid biosynthetic process0.00E+00
4GO:0006216: cytidine catabolic process0.00E+00
5GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
6GO:0033198: response to ATP0.00E+00
7GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
8GO:0009312: oligosaccharide biosynthetic process0.00E+00
9GO:0010401: pectic galactan metabolic process0.00E+00
10GO:0036503: ERAD pathway0.00E+00
11GO:0006497: protein lipidation0.00E+00
12GO:0006486: protein glycosylation1.82E-04
13GO:0002237: response to molecule of bacterial origin1.85E-04
14GO:0010150: leaf senescence1.97E-04
15GO:0006952: defense response2.58E-04
16GO:0002238: response to molecule of fungal origin2.83E-04
17GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.78E-04
18GO:0016337: single organismal cell-cell adhesion4.81E-04
19GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.81E-04
20GO:0033306: phytol metabolic process4.81E-04
21GO:0032491: detection of molecule of fungal origin4.81E-04
22GO:0010045: response to nickel cation4.81E-04
23GO:0042759: long-chain fatty acid biosynthetic process4.81E-04
24GO:0032107: regulation of response to nutrient levels4.81E-04
25GO:0046470: phosphatidylcholine metabolic process4.86E-04
26GO:0071446: cellular response to salicylic acid stimulus4.86E-04
27GO:1900056: negative regulation of leaf senescence4.86E-04
28GO:0016559: peroxisome fission6.06E-04
29GO:1900150: regulation of defense response to fungus6.06E-04
30GO:0042391: regulation of membrane potential6.58E-04
31GO:0046939: nucleotide phosphorylation1.04E-03
32GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.04E-03
33GO:1900426: positive regulation of defense response to bacterium1.04E-03
34GO:0006024: glycosaminoglycan biosynthetic process1.04E-03
35GO:1902066: regulation of cell wall pectin metabolic process1.04E-03
36GO:0052541: plant-type cell wall cellulose metabolic process1.04E-03
37GO:0042853: L-alanine catabolic process1.04E-03
38GO:0010115: regulation of abscisic acid biosynthetic process1.04E-03
39GO:0010042: response to manganese ion1.04E-03
40GO:0002240: response to molecule of oomycetes origin1.04E-03
41GO:0010271: regulation of chlorophyll catabolic process1.04E-03
42GO:0010541: acropetal auxin transport1.04E-03
43GO:0019725: cellular homeostasis1.04E-03
44GO:0015012: heparan sulfate proteoglycan biosynthetic process1.04E-03
45GO:0008202: steroid metabolic process1.04E-03
46GO:0060919: auxin influx1.04E-03
47GO:0006996: organelle organization1.04E-03
48GO:0009615: response to virus1.50E-03
49GO:0000266: mitochondrial fission1.60E-03
50GO:0009816: defense response to bacterium, incompatible interaction1.61E-03
51GO:0009751: response to salicylic acid1.64E-03
52GO:0010186: positive regulation of cellular defense response1.69E-03
53GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.69E-03
54GO:0010272: response to silver ion1.69E-03
55GO:1900055: regulation of leaf senescence1.69E-03
56GO:0048586: regulation of long-day photoperiodism, flowering1.69E-03
57GO:0032922: circadian regulation of gene expression1.69E-03
58GO:0010498: proteasomal protein catabolic process1.69E-03
59GO:1901672: positive regulation of systemic acquired resistance1.69E-03
60GO:0051176: positive regulation of sulfur metabolic process1.69E-03
61GO:0010102: lateral root morphogenesis1.82E-03
62GO:0007165: signal transduction2.36E-03
63GO:0010306: rhamnogalacturonan II biosynthetic process2.45E-03
64GO:0010104: regulation of ethylene-activated signaling pathway2.45E-03
65GO:1902290: positive regulation of defense response to oomycetes2.45E-03
66GO:0046513: ceramide biosynthetic process2.45E-03
67GO:0060548: negative regulation of cell death3.30E-03
68GO:0045227: capsule polysaccharide biosynthetic process3.30E-03
69GO:0045088: regulation of innate immune response3.30E-03
70GO:0033358: UDP-L-arabinose biosynthetic process3.30E-03
71GO:0033356: UDP-L-arabinose metabolic process3.30E-03
72GO:0009814: defense response, incompatible interaction3.79E-03
73GO:0051707: response to other organism3.95E-03
74GO:0009435: NAD biosynthetic process4.23E-03
75GO:0006665: sphingolipid metabolic process4.23E-03
76GO:0016094: polyprenol biosynthetic process4.23E-03
77GO:0006465: signal peptide processing4.23E-03
78GO:0000304: response to singlet oxygen4.23E-03
79GO:0098719: sodium ion import across plasma membrane4.23E-03
80GO:0071368: cellular response to cytokinin stimulus4.23E-03
81GO:0031365: N-terminal protein amino acid modification4.23E-03
82GO:0009229: thiamine diphosphate biosynthetic process4.23E-03
83GO:0006468: protein phosphorylation4.44E-03
84GO:0048827: phyllome development5.24E-03
85GO:0045040: protein import into mitochondrial outer membrane5.24E-03
86GO:0006139: nucleobase-containing compound metabolic process5.24E-03
87GO:0042176: regulation of protein catabolic process5.24E-03
88GO:0010315: auxin efflux5.24E-03
89GO:1900425: negative regulation of defense response to bacterium5.24E-03
90GO:0010337: regulation of salicylic acid metabolic process5.24E-03
91GO:0018258: protein O-linked glycosylation via hydroxyproline5.24E-03
92GO:0009228: thiamine biosynthetic process5.24E-03
93GO:0009972: cytidine deamination5.24E-03
94GO:0010405: arabinogalactan protein metabolic process5.24E-03
95GO:0016042: lipid catabolic process5.75E-03
96GO:0050832: defense response to fungus6.21E-03
97GO:0080113: regulation of seed growth6.32E-03
98GO:0006623: protein targeting to vacuole6.57E-03
99GO:0009610: response to symbiotic fungus7.48E-03
100GO:0080186: developmental vegetative growth7.48E-03
101GO:0000122: negative regulation of transcription from RNA polymerase II promoter7.48E-03
102GO:0010038: response to metal ion7.48E-03
103GO:0042742: defense response to bacterium7.54E-03
104GO:0009620: response to fungus8.10E-03
105GO:0006102: isocitrate metabolic process8.71E-03
106GO:0009850: auxin metabolic process8.71E-03
107GO:0048766: root hair initiation8.71E-03
108GO:2000031: regulation of salicylic acid mediated signaling pathway1.00E-02
109GO:0006367: transcription initiation from RNA polymerase II promoter1.00E-02
110GO:0006997: nucleus organization1.00E-02
111GO:0010204: defense response signaling pathway, resistance gene-independent1.00E-02
112GO:0009627: systemic acquired resistance1.14E-02
113GO:0007338: single fertilization1.14E-02
114GO:0019432: triglyceride biosynthetic process1.14E-02
115GO:0009060: aerobic respiration1.14E-02
116GO:0051453: regulation of intracellular pH1.28E-02
117GO:0090332: stomatal closure1.28E-02
118GO:0048268: clathrin coat assembly1.28E-02
119GO:0048354: mucilage biosynthetic process involved in seed coat development1.28E-02
120GO:0010380: regulation of chlorophyll biosynthetic process1.28E-02
121GO:0008219: cell death1.34E-02
122GO:0048767: root hair elongation1.41E-02
123GO:0006032: chitin catabolic process1.43E-02
124GO:0010043: response to zinc ion1.55E-02
125GO:0048527: lateral root development1.55E-02
126GO:0010119: regulation of stomatal movement1.55E-02
127GO:0009682: induced systemic resistance1.58E-02
128GO:0000272: polysaccharide catabolic process1.58E-02
129GO:0030148: sphingolipid biosynthetic process1.58E-02
130GO:0006790: sulfur compound metabolic process1.74E-02
131GO:0055046: microgametogenesis1.91E-02
132GO:0006626: protein targeting to mitochondrion1.91E-02
133GO:2000028: regulation of photoperiodism, flowering1.91E-02
134GO:0050826: response to freezing1.91E-02
135GO:0010540: basipetal auxin transport2.08E-02
136GO:0034605: cellular response to heat2.08E-02
137GO:0007166: cell surface receptor signaling pathway2.16E-02
138GO:0009926: auxin polar transport2.19E-02
139GO:0010053: root epidermal cell differentiation2.26E-02
140GO:0009225: nucleotide-sugar metabolic process2.26E-02
141GO:0070588: calcium ion transmembrane transport2.26E-02
142GO:0046854: phosphatidylinositol phosphorylation2.26E-02
143GO:0000209: protein polyubiquitination2.28E-02
144GO:0042753: positive regulation of circadian rhythm2.44E-02
145GO:0034976: response to endoplasmic reticulum stress2.44E-02
146GO:0009636: response to toxic substance2.47E-02
147GO:0080147: root hair cell development2.62E-02
148GO:0006289: nucleotide-excision repair2.62E-02
149GO:2000377: regulation of reactive oxygen species metabolic process2.62E-02
150GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.66E-02
151GO:0009846: pollen germination2.76E-02
152GO:0010073: meristem maintenance2.82E-02
153GO:0048511: rhythmic process3.01E-02
154GO:0006334: nucleosome assembly3.01E-02
155GO:0016998: cell wall macromolecule catabolic process3.01E-02
156GO:0071456: cellular response to hypoxia3.21E-02
157GO:0016226: iron-sulfur cluster assembly3.21E-02
158GO:2000022: regulation of jasmonic acid mediated signaling pathway3.21E-02
159GO:0007005: mitochondrion organization3.21E-02
160GO:0015031: protein transport3.22E-02
161GO:0006012: galactose metabolic process3.42E-02
162GO:0010082: regulation of root meristem growth3.42E-02
163GO:0010584: pollen exine formation3.63E-02
164GO:0006284: base-excision repair3.63E-02
165GO:0009561: megagametogenesis3.63E-02
166GO:0070417: cellular response to cold3.84E-02
167GO:0042147: retrograde transport, endosome to Golgi3.84E-02
168GO:0008033: tRNA processing4.06E-02
169GO:0010087: phloem or xylem histogenesis4.06E-02
170GO:0009958: positive gravitropism4.28E-02
171GO:0006885: regulation of pH4.28E-02
172GO:0045489: pectin biosynthetic process4.28E-02
173GO:0071472: cellular response to salt stress4.28E-02
174GO:0016192: vesicle-mediated transport4.39E-02
175GO:0048544: recognition of pollen4.51E-02
176GO:0006814: sodium ion transport4.51E-02
177GO:0048825: cotyledon development4.74E-02
178GO:0016310: phosphorylation4.82E-02
179GO:0010193: response to ozone4.97E-02
RankGO TermAdjusted P value
1GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
2GO:0018580: nitronate monooxygenase activity0.00E+00
3GO:0019205: nucleobase-containing compound kinase activity0.00E+00
4GO:0052821: DNA-7-methyladenine glycosylase activity0.00E+00
5GO:0003905: alkylbase DNA N-glycosylase activity0.00E+00
6GO:0044318: L-aspartate:fumarate oxidoreductase activity0.00E+00
7GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
8GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
9GO:0008734: L-aspartate oxidase activity0.00E+00
10GO:0051670: inulinase activity0.00E+00
11GO:0043916: DNA-7-methylguanine glycosylase activity0.00E+00
12GO:0050334: thiaminase activity0.00E+00
13GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
14GO:0047844: deoxycytidine deaminase activity0.00E+00
15GO:0005212: structural constituent of eye lens0.00E+00
16GO:0052822: DNA-3-methylguanine glycosylase activity0.00E+00
17GO:0034338: short-chain carboxylesterase activity0.00E+00
18GO:0004630: phospholipase D activity3.59E-05
19GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity3.59E-05
20GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.00E-04
21GO:0030552: cAMP binding2.18E-04
22GO:0030553: cGMP binding2.18E-04
23GO:0035252: UDP-xylosyltransferase activity2.83E-04
24GO:0005216: ion channel activity3.35E-04
25GO:0051669: fructan beta-fructosidase activity4.81E-04
26GO:0019707: protein-cysteine S-acyltransferase activity4.81E-04
27GO:0031219: levanase activity4.81E-04
28GO:0004649: poly(ADP-ribose) glycohydrolase activity4.81E-04
29GO:0005249: voltage-gated potassium channel activity6.58E-04
30GO:0030551: cyclic nucleotide binding6.58E-04
31GO:0008142: oxysterol binding7.39E-04
32GO:0008970: phosphatidylcholine 1-acylhydrolase activity7.39E-04
33GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.04E-03
34GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity1.04E-03
35GO:0032934: sterol binding1.04E-03
36GO:0008805: carbon-monoxide oxygenase activity1.04E-03
37GO:0045140: inositol phosphoceramide synthase activity1.04E-03
38GO:0019779: Atg8 activating enzyme activity1.04E-03
39GO:0052739: phosphatidylserine 1-acylhydrolase activity1.04E-03
40GO:0050291: sphingosine N-acyltransferase activity1.04E-03
41GO:0016301: kinase activity1.15E-03
42GO:0000030: mannosyltransferase activity1.69E-03
43GO:0016174: NAD(P)H oxidase activity1.69E-03
44GO:0042409: caffeoyl-CoA O-methyltransferase activity1.69E-03
45GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.69E-03
46GO:0019201: nucleotide kinase activity2.45E-03
47GO:0035529: NADH pyrophosphatase activity2.45E-03
48GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.45E-03
49GO:0004449: isocitrate dehydrogenase (NAD+) activity2.45E-03
50GO:0010178: IAA-amino acid conjugate hydrolase activity2.45E-03
51GO:0001075: transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly3.30E-03
52GO:0010328: auxin influx transmembrane transporter activity3.30E-03
53GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity3.30E-03
54GO:0050373: UDP-arabinose 4-epimerase activity3.30E-03
55GO:0035251: UDP-glucosyltransferase activity3.46E-03
56GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.85E-03
57GO:0008725: DNA-3-methyladenine glycosylase activity4.23E-03
58GO:0008374: O-acyltransferase activity4.23E-03
59GO:0002094: polyprenyltransferase activity4.23E-03
60GO:0005546: phosphatidylinositol-4,5-bisphosphate binding4.23E-03
61GO:0004623: phospholipase A2 activity4.23E-03
62GO:0047631: ADP-ribose diphosphatase activity4.23E-03
63GO:0004674: protein serine/threonine kinase activity4.98E-03
64GO:1990714: hydroxyproline O-galactosyltransferase activity5.24E-03
65GO:0047714: galactolipase activity5.24E-03
66GO:0000210: NAD+ diphosphatase activity5.24E-03
67GO:0004126: cytidine deaminase activity6.32E-03
68GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.32E-03
69GO:0004017: adenylate kinase activity6.32E-03
70GO:0003950: NAD+ ADP-ribosyltransferase activity6.32E-03
71GO:0004144: diacylglycerol O-acyltransferase activity6.32E-03
72GO:0005261: cation channel activity6.32E-03
73GO:0003978: UDP-glucose 4-epimerase activity6.32E-03
74GO:0008235: metalloexopeptidase activity7.48E-03
75GO:0102425: myricetin 3-O-glucosyltransferase activity7.48E-03
76GO:0102360: daphnetin 3-O-glucosyltransferase activity7.48E-03
77GO:0008320: protein transmembrane transporter activity7.48E-03
78GO:0015385: sodium:proton antiporter activity8.02E-03
79GO:0047893: flavonol 3-O-glucosyltransferase activity8.71E-03
80GO:0005544: calcium-dependent phospholipid binding8.71E-03
81GO:0004708: MAP kinase kinase activity8.71E-03
82GO:0016757: transferase activity, transferring glycosyl groups8.93E-03
83GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity9.08E-03
84GO:0051213: dioxygenase activity1.02E-02
85GO:0008417: fucosyltransferase activity1.14E-02
86GO:0008375: acetylglucosaminyltransferase activity1.14E-02
87GO:0004806: triglyceride lipase activity1.20E-02
88GO:0030234: enzyme regulator activity1.43E-02
89GO:0004568: chitinase activity1.43E-02
90GO:0008171: O-methyltransferase activity1.43E-02
91GO:0005545: 1-phosphatidylinositol binding1.43E-02
92GO:0008047: enzyme activator activity1.43E-02
93GO:0004222: metalloendopeptidase activity1.48E-02
94GO:0015386: potassium:proton antiporter activity1.58E-02
95GO:0004177: aminopeptidase activity1.58E-02
96GO:0008559: xenobiotic-transporting ATPase activity1.58E-02
97GO:0008378: galactosyltransferase activity1.74E-02
98GO:0000049: tRNA binding1.74E-02
99GO:0005509: calcium ion binding1.77E-02
100GO:0005388: calcium-transporting ATPase activity1.91E-02
101GO:0010329: auxin efflux transmembrane transporter activity1.91E-02
102GO:0004867: serine-type endopeptidase inhibitor activity2.26E-02
103GO:0008061: chitin binding2.26E-02
104GO:0004190: aspartic-type endopeptidase activity2.26E-02
105GO:0008134: transcription factor binding2.62E-02
106GO:0001046: core promoter sequence-specific DNA binding2.62E-02
107GO:0030246: carbohydrate binding2.71E-02
108GO:0008408: 3'-5' exonuclease activity3.01E-02
109GO:0019706: protein-cysteine S-palmitoyltransferase activity3.01E-02
110GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.21E-02
111GO:0016491: oxidoreductase activity3.44E-02
112GO:0043531: ADP binding3.55E-02
113GO:0003756: protein disulfide isomerase activity3.63E-02
114GO:0004499: N,N-dimethylaniline monooxygenase activity3.63E-02
115GO:0004842: ubiquitin-protein transferase activity3.76E-02
116GO:0005102: receptor binding3.84E-02
117GO:0005451: monovalent cation:proton antiporter activity4.06E-02
118GO:0030276: clathrin binding4.28E-02
119GO:0004527: exonuclease activity4.28E-02
120GO:0003713: transcription coactivator activity4.28E-02
121GO:0046872: metal ion binding4.49E-02
122GO:0015299: solute:proton antiporter activity4.51E-02
123GO:0010181: FMN binding4.51E-02
124GO:0019901: protein kinase binding4.74E-02
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Gene type



Gene DE type