Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G24610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:2000505: regulation of energy homeostasis0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0017038: protein import0.00E+00
5GO:0046460: neutral lipid biosynthetic process0.00E+00
6GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
7GO:0044249: cellular biosynthetic process0.00E+00
8GO:0090071: negative regulation of ribosome biogenesis0.00E+00
9GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0042820: vitamin B6 catabolic process0.00E+00
12GO:0090470: shoot organ boundary specification0.00E+00
13GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
14GO:0042817: pyridoxal metabolic process0.00E+00
15GO:0042407: cristae formation0.00E+00
16GO:0042821: pyridoxal biosynthetic process0.00E+00
17GO:0090042: tubulin deacetylation0.00E+00
18GO:0006114: glycerol biosynthetic process0.00E+00
19GO:0018023: peptidyl-lysine trimethylation0.00E+00
20GO:0006399: tRNA metabolic process0.00E+00
21GO:0070125: mitochondrial translational elongation0.00E+00
22GO:0006429: leucyl-tRNA aminoacylation0.00E+00
23GO:0009658: chloroplast organization3.50E-08
24GO:0009657: plastid organization5.09E-05
25GO:0032543: mitochondrial translation2.52E-04
26GO:0045038: protein import into chloroplast thylakoid membrane2.52E-04
27GO:0010190: cytochrome b6f complex assembly3.54E-04
28GO:0030488: tRNA methylation4.72E-04
29GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.57E-04
30GO:0006419: alanyl-tRNA aminoacylation5.57E-04
31GO:0000476: maturation of 4.5S rRNA5.57E-04
32GO:0009443: pyridoxal 5'-phosphate salvage5.57E-04
33GO:0000967: rRNA 5'-end processing5.57E-04
34GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.57E-04
35GO:0043266: regulation of potassium ion transport5.57E-04
36GO:0006659: phosphatidylserine biosynthetic process5.57E-04
37GO:0042547: cell wall modification involved in multidimensional cell growth5.57E-04
38GO:0042371: vitamin K biosynthetic process5.57E-04
39GO:2000021: regulation of ion homeostasis5.57E-04
40GO:1902458: positive regulation of stomatal opening5.57E-04
41GO:0048363: mucilage pectin metabolic process5.57E-04
42GO:0006747: FAD biosynthetic process5.57E-04
43GO:0006400: tRNA modification6.04E-04
44GO:0048564: photosystem I assembly7.52E-04
45GO:0006353: DNA-templated transcription, termination7.52E-04
46GO:0000105: histidine biosynthetic process7.52E-04
47GO:0071482: cellular response to light stimulus9.15E-04
48GO:0010206: photosystem II repair1.09E-03
49GO:0010198: synergid death1.20E-03
50GO:0006739: NADP metabolic process1.20E-03
51GO:1900871: chloroplast mRNA modification1.20E-03
52GO:0060359: response to ammonium ion1.20E-03
53GO:0018026: peptidyl-lysine monomethylation1.20E-03
54GO:0090342: regulation of cell aging1.20E-03
55GO:0071668: plant-type cell wall assembly1.20E-03
56GO:0009220: pyrimidine ribonucleotide biosynthetic process1.20E-03
57GO:0034755: iron ion transmembrane transport1.20E-03
58GO:0006423: cysteinyl-tRNA aminoacylation1.20E-03
59GO:0006435: threonyl-tRNA aminoacylation1.20E-03
60GO:0080183: response to photooxidative stress1.20E-03
61GO:0001682: tRNA 5'-leader removal1.20E-03
62GO:1903426: regulation of reactive oxygen species biosynthetic process1.20E-03
63GO:0034470: ncRNA processing1.20E-03
64GO:0006782: protoporphyrinogen IX biosynthetic process1.51E-03
65GO:0009089: lysine biosynthetic process via diaminopimelate1.74E-03
66GO:0006352: DNA-templated transcription, initiation1.74E-03
67GO:0006415: translational termination1.74E-03
68GO:0033591: response to L-ascorbic acid1.97E-03
69GO:0048281: inflorescence morphogenesis1.97E-03
70GO:0006954: inflammatory response1.97E-03
71GO:0015940: pantothenate biosynthetic process1.97E-03
72GO:0001578: microtubule bundle formation1.97E-03
73GO:0045493: xylan catabolic process1.97E-03
74GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.97E-03
75GO:0043157: response to cation stress1.97E-03
76GO:0005977: glycogen metabolic process1.97E-03
77GO:0010027: thylakoid membrane organization2.00E-03
78GO:2000012: regulation of auxin polar transport2.27E-03
79GO:0009627: systemic acquired resistance2.30E-03
80GO:0009793: embryo development ending in seed dormancy2.42E-03
81GO:0015995: chlorophyll biosynthetic process2.46E-03
82GO:0010207: photosystem II assembly2.56E-03
83GO:0010020: chloroplast fission2.56E-03
84GO:0046653: tetrahydrofolate metabolic process2.86E-03
85GO:0010239: chloroplast mRNA processing2.86E-03
86GO:0009226: nucleotide-sugar biosynthetic process2.86E-03
87GO:0008615: pyridoxine biosynthetic process2.86E-03
88GO:0006424: glutamyl-tRNA aminoacylation2.86E-03
89GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.86E-03
90GO:0006164: purine nucleotide biosynthetic process2.86E-03
91GO:0010148: transpiration2.86E-03
92GO:2001141: regulation of RNA biosynthetic process2.86E-03
93GO:0016556: mRNA modification2.86E-03
94GO:0010371: regulation of gibberellin biosynthetic process2.86E-03
95GO:0009102: biotin biosynthetic process2.86E-03
96GO:0071732: cellular response to nitric oxide2.88E-03
97GO:0090351: seedling development2.88E-03
98GO:0051322: anaphase3.85E-03
99GO:0009765: photosynthesis, light harvesting3.85E-03
100GO:0022622: root system development3.85E-03
101GO:0006021: inositol biosynthetic process3.85E-03
102GO:0071483: cellular response to blue light3.85E-03
103GO:0006734: NADH metabolic process3.85E-03
104GO:0044205: 'de novo' UMP biosynthetic process3.85E-03
105GO:0007020: microtubule nucleation3.85E-03
106GO:0010021: amylopectin biosynthetic process3.85E-03
107GO:0010109: regulation of photosynthesis3.85E-03
108GO:0006418: tRNA aminoacylation for protein translation3.93E-03
109GO:0061077: chaperone-mediated protein folding4.33E-03
110GO:0006730: one-carbon metabolic process4.74E-03
111GO:0046785: microtubule polymerization4.94E-03
112GO:0010236: plastoquinone biosynthetic process4.94E-03
113GO:0016120: carotene biosynthetic process4.94E-03
114GO:0016123: xanthophyll biosynthetic process4.94E-03
115GO:0071369: cellular response to ethylene stimulus5.18E-03
116GO:0006413: translational initiation5.42E-03
117GO:0006508: proteolysis5.49E-03
118GO:0040008: regulation of growth5.62E-03
119GO:0015979: photosynthesis5.72E-03
120GO:0042793: transcription from plastid promoter6.12E-03
121GO:0016554: cytidine to uridine editing6.12E-03
122GO:0032973: amino acid export6.12E-03
123GO:0010264: myo-inositol hexakisphosphate biosynthetic process6.12E-03
124GO:0009959: negative gravitropism6.12E-03
125GO:0019509: L-methionine salvage from methylthioadenosine7.40E-03
126GO:0042372: phylloquinone biosynthetic process7.40E-03
127GO:0006458: 'de novo' protein folding7.40E-03
128GO:0017148: negative regulation of translation7.40E-03
129GO:0042026: protein refolding7.40E-03
130GO:0034389: lipid particle organization7.40E-03
131GO:1901259: chloroplast rRNA processing7.40E-03
132GO:0080086: stamen filament development7.40E-03
133GO:0009648: photoperiodism7.40E-03
134GO:0010310: regulation of hydrogen peroxide metabolic process7.40E-03
135GO:0006364: rRNA processing7.72E-03
136GO:0048528: post-embryonic root development8.76E-03
137GO:0009772: photosynthetic electron transport in photosystem II8.76E-03
138GO:0043090: amino acid import8.76E-03
139GO:0070370: cellular heat acclimation8.76E-03
140GO:0006614: SRP-dependent cotranslational protein targeting to membrane8.76E-03
141GO:0010196: nonphotochemical quenching8.76E-03
142GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process8.76E-03
143GO:0010103: stomatal complex morphogenesis8.76E-03
144GO:0032880: regulation of protein localization8.76E-03
145GO:0009630: gravitropism9.43E-03
146GO:0071281: cellular response to iron ion1.01E-02
147GO:1901657: glycosyl compound metabolic process1.01E-02
148GO:0006605: protein targeting1.02E-02
149GO:2000070: regulation of response to water deprivation1.02E-02
150GO:0046620: regulation of organ growth1.02E-02
151GO:0031540: regulation of anthocyanin biosynthetic process1.02E-02
152GO:0070413: trehalose metabolism in response to stress1.02E-02
153GO:0009231: riboflavin biosynthetic process1.02E-02
154GO:0052543: callose deposition in cell wall1.02E-02
155GO:0001558: regulation of cell growth1.17E-02
156GO:0022900: electron transport chain1.17E-02
157GO:0006526: arginine biosynthetic process1.17E-02
158GO:0032544: plastid translation1.17E-02
159GO:0009932: cell tip growth1.17E-02
160GO:0005975: carbohydrate metabolic process1.21E-02
161GO:0080144: amino acid homeostasis1.33E-02
162GO:0006098: pentose-phosphate shunt1.33E-02
163GO:0006783: heme biosynthetic process1.33E-02
164GO:0019432: triglyceride biosynthetic process1.33E-02
165GO:0015780: nucleotide-sugar transport1.33E-02
166GO:0043067: regulation of programmed cell death1.50E-02
167GO:0006779: porphyrin-containing compound biosynthetic process1.50E-02
168GO:1900865: chloroplast RNA modification1.50E-02
169GO:0048354: mucilage biosynthetic process involved in seed coat development1.50E-02
170GO:0005982: starch metabolic process1.50E-02
171GO:0009733: response to auxin1.56E-02
172GO:0010629: negative regulation of gene expression1.68E-02
173GO:0006949: syncytium formation1.68E-02
174GO:0019684: photosynthesis, light reaction1.86E-02
175GO:1903507: negative regulation of nucleic acid-templated transcription1.86E-02
176GO:0006879: cellular iron ion homeostasis1.86E-02
177GO:0008285: negative regulation of cell proliferation1.86E-02
178GO:0009684: indoleacetic acid biosynthetic process1.86E-02
179GO:0010015: root morphogenesis1.86E-02
180GO:0009790: embryo development1.97E-02
181GO:0045037: protein import into chloroplast stroma2.05E-02
182GO:0010229: inflorescence development2.24E-02
183GO:0009725: response to hormone2.24E-02
184GO:0006094: gluconeogenesis2.24E-02
185GO:0048467: gynoecium development2.44E-02
186GO:0008283: cell proliferation2.75E-02
187GO:0010114: response to red light2.75E-02
188GO:0000162: tryptophan biosynthetic process2.86E-02
189GO:0042023: DNA endoreduplication2.86E-02
190GO:0006071: glycerol metabolic process2.86E-02
191GO:0009116: nucleoside metabolic process3.08E-02
192GO:0009944: polarity specification of adaxial/abaxial axis3.08E-02
193GO:0006289: nucleotide-excision repair3.08E-02
194GO:0007010: cytoskeleton organization3.08E-02
195GO:0005992: trehalose biosynthetic process3.08E-02
196GO:0051302: regulation of cell division3.31E-02
197GO:0016575: histone deacetylation3.31E-02
198GO:0043622: cortical microtubule organization3.31E-02
199GO:0007017: microtubule-based process3.31E-02
200GO:0010073: meristem maintenance3.31E-02
201GO:0042538: hyperosmotic salinity response3.45E-02
202GO:0009664: plant-type cell wall organization3.45E-02
203GO:0048511: rhythmic process3.54E-02
204GO:0009814: defense response, incompatible interaction3.78E-02
205GO:2000022: regulation of jasmonic acid mediated signaling pathway3.78E-02
206GO:0035428: hexose transmembrane transport3.78E-02
207GO:0007005: mitochondrion organization3.78E-02
208GO:0031348: negative regulation of defense response3.78E-02
209GO:0019748: secondary metabolic process3.78E-02
210GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.02E-02
211GO:0001944: vasculature development4.02E-02
212GO:0010227: floral organ abscission4.02E-02
213GO:0009306: protein secretion4.26E-02
214GO:0016117: carotenoid biosynthetic process4.51E-02
215GO:0008284: positive regulation of cell proliferation4.51E-02
216GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.51E-02
217GO:0009734: auxin-activated signaling pathway4.76E-02
218GO:0000271: polysaccharide biosynthetic process4.77E-02
219GO:0008033: tRNA processing4.77E-02
RankGO TermAdjusted P value
1GO:0043136: glycerol-3-phosphatase activity0.00E+00
2GO:0000121: glycerol-1-phosphatase activity0.00E+00
3GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
4GO:0043864: indoleacetamide hydrolase activity0.00E+00
5GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
6GO:0008115: sarcosine oxidase activity0.00E+00
7GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
8GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
9GO:0050613: delta14-sterol reductase activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
12GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
13GO:0043014: alpha-tubulin binding0.00E+00
14GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
15GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
16GO:0051721: protein phosphatase 2A binding0.00E+00
17GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
18GO:0004823: leucine-tRNA ligase activity0.00E+00
19GO:0042903: tubulin deacetylase activity0.00E+00
20GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
21GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
22GO:0045435: lycopene epsilon cyclase activity0.00E+00
23GO:0004822: isoleucine-tRNA ligase activity0.00E+00
24GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
25GO:0015267: channel activity0.00E+00
26GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
27GO:0004358: glutamate N-acetyltransferase activity0.00E+00
28GO:0005048: signal sequence binding0.00E+00
29GO:0004076: biotin synthase activity0.00E+00
30GO:0003937: IMP cyclohydrolase activity0.00E+00
31GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.35E-05
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.35E-05
33GO:0005528: FK506 binding2.73E-05
34GO:0002161: aminoacyl-tRNA editing activity4.54E-05
35GO:0070402: NADPH binding4.54E-05
36GO:0016149: translation release factor activity, codon specific9.62E-05
37GO:0016851: magnesium chelatase activity9.62E-05
38GO:0016987: sigma factor activity1.66E-04
39GO:0001053: plastid sigma factor activity1.66E-04
40GO:0004040: amidase activity2.52E-04
41GO:0004017: adenylate kinase activity4.72E-04
42GO:0005227: calcium activated cation channel activity5.57E-04
43GO:0004733: pyridoxamine-phosphate oxidase activity5.57E-04
44GO:0004856: xylulokinase activity5.57E-04
45GO:0009496: plastoquinol--plastocyanin reductase activity5.57E-04
46GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.57E-04
47GO:0004813: alanine-tRNA ligase activity5.57E-04
48GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.57E-04
49GO:0052857: NADPHX epimerase activity5.57E-04
50GO:0004853: uroporphyrinogen decarboxylase activity5.57E-04
51GO:0052856: NADHX epimerase activity5.57E-04
52GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.57E-04
53GO:0043022: ribosome binding7.52E-04
54GO:0005525: GTP binding9.58E-04
55GO:0043621: protein self-association1.09E-03
56GO:0003747: translation release factor activity1.09E-03
57GO:0004817: cysteine-tRNA ligase activity1.20E-03
58GO:0004829: threonine-tRNA ligase activity1.20E-03
59GO:0019156: isoamylase activity1.20E-03
60GO:0003919: FMN adenylyltransferase activity1.20E-03
61GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.20E-03
62GO:0004512: inositol-3-phosphate synthase activity1.20E-03
63GO:0009977: proton motive force dependent protein transmembrane transporter activity1.20E-03
64GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.22E-03
65GO:0008237: metallopeptidase activity1.72E-03
66GO:0015462: ATPase-coupled protein transmembrane transporter activity1.97E-03
67GO:0005504: fatty acid binding1.97E-03
68GO:0003913: DNA photolyase activity1.97E-03
69GO:0030267: glyoxylate reductase (NADP) activity1.97E-03
70GO:0000049: tRNA binding2.00E-03
71GO:0019201: nucleotide kinase activity2.86E-03
72GO:0048487: beta-tubulin binding2.86E-03
73GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.86E-03
74GO:0043023: ribosomal large subunit binding2.86E-03
75GO:0001872: (1->3)-beta-D-glucan binding2.86E-03
76GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.85E-03
77GO:0070628: proteasome binding3.85E-03
78GO:0045430: chalcone isomerase activity3.85E-03
79GO:0004045: aminoacyl-tRNA hydrolase activity3.85E-03
80GO:0009044: xylan 1,4-beta-xylosidase activity3.85E-03
81GO:0019199: transmembrane receptor protein kinase activity3.85E-03
82GO:0042277: peptide binding3.85E-03
83GO:0046556: alpha-L-arabinofuranosidase activity3.85E-03
84GO:0004659: prenyltransferase activity3.85E-03
85GO:0016279: protein-lysine N-methyltransferase activity3.85E-03
86GO:0004176: ATP-dependent peptidase activity4.33E-03
87GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.94E-03
88GO:0016773: phosphotransferase activity, alcohol group as acceptor4.94E-03
89GO:0030570: pectate lyase activity5.18E-03
90GO:0004812: aminoacyl-tRNA ligase activity6.11E-03
91GO:0031593: polyubiquitin binding6.12E-03
92GO:0004332: fructose-bisphosphate aldolase activity6.12E-03
93GO:0004526: ribonuclease P activity6.12E-03
94GO:0004556: alpha-amylase activity6.12E-03
95GO:0042578: phosphoric ester hydrolase activity6.12E-03
96GO:2001070: starch binding6.12E-03
97GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.40E-03
98GO:0016832: aldehyde-lyase activity7.40E-03
99GO:0004144: diacylglycerol O-acyltransferase activity7.40E-03
100GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.40E-03
101GO:0051920: peroxiredoxin activity7.40E-03
102GO:0003743: translation initiation factor activity7.65E-03
103GO:0005338: nucleotide-sugar transmembrane transporter activity8.76E-03
104GO:0009881: photoreceptor activity8.76E-03
105GO:0003924: GTPase activity8.96E-03
106GO:0003723: RNA binding9.75E-03
107GO:0008312: 7S RNA binding1.02E-02
108GO:0004033: aldo-keto reductase (NADP) activity1.02E-02
109GO:0005337: nucleoside transmembrane transporter activity1.02E-02
110GO:0016209: antioxidant activity1.02E-02
111GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.17E-02
112GO:0008173: RNA methyltransferase activity1.17E-02
113GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.40E-02
114GO:0005381: iron ion transmembrane transporter activity1.50E-02
115GO:0102483: scopolin beta-glucosidase activity1.51E-02
116GO:0008236: serine-type peptidase activity1.59E-02
117GO:0004805: trehalose-phosphatase activity1.68E-02
118GO:0004222: metalloendopeptidase activity1.85E-02
119GO:0004252: serine-type endopeptidase activity1.85E-02
120GO:0008559: xenobiotic-transporting ATPase activity1.86E-02
121GO:0044183: protein binding involved in protein folding1.86E-02
122GO:0047372: acylglycerol lipase activity1.86E-02
123GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.94E-02
124GO:0003746: translation elongation factor activity2.13E-02
125GO:0004022: alcohol dehydrogenase (NAD) activity2.24E-02
126GO:0004565: beta-galactosidase activity2.24E-02
127GO:0008422: beta-glucosidase activity2.33E-02
128GO:0051539: 4 iron, 4 sulfur cluster binding2.43E-02
129GO:0008083: growth factor activity2.44E-02
130GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.44E-02
131GO:0008017: microtubule binding2.57E-02
132GO:0004185: serine-type carboxypeptidase activity2.75E-02
133GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.86E-02
134GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.86E-02
135GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.86E-02
136GO:0051537: 2 iron, 2 sulfur cluster binding2.98E-02
137GO:0004407: histone deacetylase activity3.08E-02
138GO:0043130: ubiquitin binding3.08E-02
139GO:0003714: transcription corepressor activity3.08E-02
140GO:0051536: iron-sulfur cluster binding3.08E-02
141GO:0015079: potassium ion transmembrane transporter activity3.31E-02
142GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.70E-02
143GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.78E-02
144GO:0022891: substrate-specific transmembrane transporter activity4.02E-02
145GO:0016788: hydrolase activity, acting on ester bonds4.28E-02
146GO:0022857: transmembrane transporter activity4.94E-02
<
Gene type



Gene DE type