co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G24400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043488: regulation of mRNA stability	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0007037: vacuolar phosphate transport	0.00E+00
4	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
5	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
7	GO:0017038: protein import	0.00E+00
8	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
9	GO:0010068: protoderm histogenesis	0.00E+00
10	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0032544: plastid translation	1.94E-05
12	GO:1900865: chloroplast RNA modification	3.56E-05
13	GO:0009647: skotomorphogenesis	4.81E-05
14	GO:0006415: translational termination	5.85E-05
15	GO:0045038: protein import into chloroplast thylakoid membrane	1.32E-04
16	GO:0051171: regulation of nitrogen compound metabolic process	3.73E-04
17	GO:0000476: maturation of 4.5S rRNA	3.73E-04
18	GO:0000967: rRNA 5'-end processing	3.73E-04
19	GO:0006659: phosphatidylserine biosynthetic process	3.73E-04
20	GO:0042547: cell wall modification involved in multidimensional cell growth	3.73E-04
21	GO:0043087: regulation of GTPase activity	3.73E-04
22	GO:0006264: mitochondrial DNA replication	3.73E-04
23	GO:0033259: plastid DNA replication	3.73E-04
24	GO:1902458: positive regulation of stomatal opening	3.73E-04
25	GO:0005991: trehalose metabolic process	3.73E-04
26	GO:0010450: inflorescence meristem growth	3.73E-04
27	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	8.10E-04
28	GO:1900871: chloroplast mRNA modification	8.10E-04
29	GO:0030187: melatonin biosynthetic process	8.10E-04
30	GO:0034755: iron ion transmembrane transport	8.10E-04
31	GO:0007154: cell communication	8.10E-04
32	GO:1900033: negative regulation of trichome patterning	8.10E-04
33	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.10E-04
34	GO:0006568: tryptophan metabolic process	8.10E-04
35	GO:0034470: ncRNA processing	8.10E-04
36	GO:0006420: arginyl-tRNA aminoacylation	8.10E-04
37	GO:0009684: indoleacetic acid biosynthetic process	9.70E-04
38	GO:0009658: chloroplast organization	1.06E-03
39	GO:0033591: response to L-ascorbic acid	1.31E-03
40	GO:0009405: pathogenesis	1.31E-03
41	GO:0080055: low-affinity nitrate transport	1.31E-03
42	GO:0051604: protein maturation	1.31E-03
43	GO:0001578: microtubule bundle formation	1.31E-03
44	GO:0045493: xylan catabolic process	1.31E-03
45	GO:0045165: cell fate commitment	1.31E-03
46	GO:0051639: actin filament network formation	1.89E-03
47	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.89E-03
48	GO:0048645: animal organ formation	1.89E-03
49	GO:0006164: purine nucleotide biosynthetic process	1.89E-03
50	GO:0009963: positive regulation of flavonoid biosynthetic process	1.89E-03
51	GO:0010255: glucose mediated signaling pathway	1.89E-03
52	GO:0046739: transport of virus in multicellular host	1.89E-03
53	GO:0006168: adenine salvage	1.89E-03
54	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.89E-03
55	GO:0006166: purine ribonucleoside salvage	1.89E-03
56	GO:0007010: cytoskeleton organization	1.95E-03
57	GO:0051322: anaphase	2.54E-03
58	GO:0009765: photosynthesis, light harvesting	2.54E-03
59	GO:0009649: entrainment of circadian clock	2.54E-03
60	GO:0007020: microtubule nucleation	2.54E-03
61	GO:0006021: inositol biosynthetic process	2.54E-03
62	GO:0048629: trichome patterning	2.54E-03
63	GO:0010109: regulation of photosynthesis	2.54E-03
64	GO:0051764: actin crosslink formation	2.54E-03
65	GO:0007166: cell surface receptor signaling pathway	2.93E-03
66	GO:0010158: abaxial cell fate specification	3.25E-03
67	GO:0006465: signal peptide processing	3.25E-03
68	GO:0046785: microtubule polymerization	3.25E-03
69	GO:0016120: carotene biosynthetic process	3.25E-03
70	GO:0046283: anthocyanin-containing compound metabolic process	3.25E-03
71	GO:1902183: regulation of shoot apical meristem development	3.25E-03
72	GO:0016123: xanthophyll biosynthetic process	3.25E-03
73	GO:0044209: AMP salvage	3.25E-03
74	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.33E-03
75	GO:0009585: red, far-red light phototransduction	3.56E-03
76	GO:0016554: cytidine to uridine editing	4.02E-03
77	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.02E-03
78	GO:0048831: regulation of shoot system development	4.02E-03
79	GO:0000741: karyogamy	4.02E-03
80	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.02E-03
81	GO:0007018: microtubule-based movement	4.18E-03
82	GO:0009955: adaxial/abaxial pattern specification	4.85E-03
83	GO:0042372: phylloquinone biosynthetic process	4.85E-03
84	GO:0048280: vesicle fusion with Golgi apparatus	4.85E-03
85	GO:1901259: chloroplast rRNA processing	4.85E-03
86	GO:0030488: tRNA methylation	4.85E-03
87	GO:0016032: viral process	5.12E-03
88	GO:0010444: guard mother cell differentiation	5.73E-03
89	GO:0009395: phospholipid catabolic process	5.73E-03
90	GO:0048528: post-embryonic root development	5.73E-03
91	GO:0006402: mRNA catabolic process	6.65E-03
92	GO:0006605: protein targeting	6.65E-03
93	GO:0070413: trehalose metabolism in response to stress	6.65E-03
94	GO:0010078: maintenance of root meristem identity	6.65E-03
95	GO:2000070: regulation of response to water deprivation	6.65E-03
96	GO:0010027: thylakoid membrane organization	6.94E-03
97	GO:0009657: plastid organization	7.64E-03
98	GO:0043562: cellular response to nitrogen levels	7.64E-03
99	GO:0010093: specification of floral organ identity	7.64E-03
100	GO:0009627: systemic acquired resistance	7.76E-03
101	GO:0015995: chlorophyll biosynthetic process	8.18E-03
102	GO:0010206: photosystem II repair	8.66E-03
103	GO:2000024: regulation of leaf development	8.66E-03
104	GO:0006783: heme biosynthetic process	8.66E-03
105	GO:0006189: 'de novo' IMP biosynthetic process	8.66E-03
106	GO:0009832: plant-type cell wall biogenesis	9.54E-03
107	GO:0009638: phototropism	9.74E-03
108	GO:0010380: regulation of chlorophyll biosynthetic process	9.74E-03
109	GO:0071577: zinc II ion transmembrane transport	9.74E-03
110	GO:0006896: Golgi to vacuole transport	1.09E-02
111	GO:0006782: protoporphyrinogen IX biosynthetic process	1.09E-02
112	GO:0006535: cysteine biosynthetic process from serine	1.09E-02
113	GO:0045036: protein targeting to chloroplast	1.09E-02
114	GO:0009641: shade avoidance	1.09E-02
115	GO:0006949: syncytium formation	1.09E-02
116	GO:0016042: lipid catabolic process	1.12E-02
117	GO:0045490: pectin catabolic process	1.12E-02
118	GO:0009773: photosynthetic electron transport in photosystem I	1.20E-02
119	GO:1903507: negative regulation of nucleic acid-templated transcription	1.20E-02
120	GO:0006879: cellular iron ion homeostasis	1.20E-02
121	GO:0000272: polysaccharide catabolic process	1.20E-02
122	GO:0006468: protein phosphorylation	1.30E-02
123	GO:0016024: CDP-diacylglycerol biosynthetic process	1.33E-02
124	GO:0010588: cotyledon vascular tissue pattern formation	1.45E-02
125	GO:2000012: regulation of auxin polar transport	1.45E-02
126	GO:0010628: positive regulation of gene expression	1.45E-02
127	GO:0050826: response to freezing	1.45E-02
128	GO:0006508: proteolysis	1.48E-02
129	GO:0009640: photomorphogenesis	1.49E-02
130	GO:0048467: gynoecium development	1.58E-02
131	GO:0010143: cutin biosynthetic process	1.58E-02
132	GO:0006541: glutamine metabolic process	1.58E-02
133	GO:0009933: meristem structural organization	1.58E-02
134	GO:0019853: L-ascorbic acid biosynthetic process	1.71E-02
135	GO:0010030: positive regulation of seed germination	1.71E-02
136	GO:0000162: tryptophan biosynthetic process	1.85E-02
137	GO:0009833: plant-type primary cell wall biogenesis	1.85E-02
138	GO:0006833: water transport	1.85E-02
139	GO:0009944: polarity specification of adaxial/abaxial axis	1.99E-02
140	GO:0010187: negative regulation of seed germination	1.99E-02
141	GO:0051017: actin filament bundle assembly	1.99E-02
142	GO:0005992: trehalose biosynthetic process	1.99E-02
143	GO:0019344: cysteine biosynthetic process	1.99E-02
144	GO:0051603: proteolysis involved in cellular protein catabolic process	2.08E-02
145	GO:0006418: tRNA aminoacylation for protein translation	2.14E-02
146	GO:0043622: cortical microtubule organization	2.14E-02
147	GO:0048511: rhythmic process	2.29E-02
148	GO:0009723: response to ethylene	2.35E-02
149	GO:0009814: defense response, incompatible interaction	2.44E-02
150	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.44E-02
151	GO:0006730: one-carbon metabolic process	2.44E-02
152	GO:0031348: negative regulation of defense response	2.44E-02
153	GO:0048367: shoot system development	2.46E-02
154	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.60E-02
155	GO:0006012: galactose metabolic process	2.60E-02
156	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.67E-02
157	GO:0009416: response to light stimulus	2.75E-02
158	GO:0009306: protein secretion	2.76E-02
159	GO:0010214: seed coat development	2.76E-02
160	GO:0016117: carotenoid biosynthetic process	2.92E-02
161	GO:0042147: retrograde transport, endosome to Golgi	2.92E-02
162	GO:0006396: RNA processing	2.95E-02
163	GO:0042631: cellular response to water deprivation	3.08E-02
164	GO:0042335: cuticle development	3.08E-02
165	GO:0000271: polysaccharide biosynthetic process	3.08E-02
166	GO:0080022: primary root development	3.08E-02
167	GO:0034220: ion transmembrane transport	3.08E-02
168	GO:0010087: phloem or xylem histogenesis	3.08E-02
169	GO:0045489: pectin biosynthetic process	3.25E-02
170	GO:0009958: positive gravitropism	3.25E-02
171	GO:0010154: fruit development	3.25E-02
172	GO:0010197: polar nucleus fusion	3.25E-02
173	GO:0010182: sugar mediated signaling pathway	3.25E-02
174	GO:0042752: regulation of circadian rhythm	3.42E-02
175	GO:0009646: response to absence of light	3.42E-02
176	GO:0006623: protein targeting to vacuole	3.60E-02
177	GO:0009791: post-embryonic development	3.60E-02
178	GO:0048825: cotyledon development	3.60E-02
179	GO:0008654: phospholipid biosynthetic process	3.60E-02
180	GO:0009851: auxin biosynthetic process	3.60E-02
181	GO:0006891: intra-Golgi vesicle-mediated transport	3.78E-02
182	GO:0055085: transmembrane transport	3.89E-02
183	GO:0030163: protein catabolic process	4.14E-02
184	GO:0010090: trichome morphogenesis	4.14E-02
185	GO:1901657: glycosyl compound metabolic process	4.14E-02
186	GO:0009790: embryo development	4.18E-02
187	GO:0006464: cellular protein modification process	4.33E-02
188	GO:0009828: plant-type cell wall loosening	4.33E-02
189	GO:0071805: potassium ion transmembrane transport	4.52E-02
190	GO:0006413: translational initiation	4.60E-02
191	GO:0000910: cytokinesis	4.71E-02
192	GO:0040008: regulation of growth	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
2	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
3	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
10	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
11	GO:0003747: translation release factor activity	2.67E-05
12	GO:0016149: translation release factor activity, codon specific	4.81E-05
13	GO:0008017: microtubule binding	8.93E-05
14	GO:0030570: pectate lyase activity	2.93E-04
15	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.73E-04
16	GO:0004853: uroporphyrinogen decarboxylase activity	3.73E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.73E-04
18	GO:0050139: nicotinate-N-glucosyltransferase activity	3.73E-04
19	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.32E-04
20	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	8.10E-04
21	GO:0016630: protochlorophyllide reductase activity	8.10E-04
22	GO:0004512: inositol-3-phosphate synthase activity	8.10E-04
23	GO:0050017: L-3-cyanoalanine synthase activity	8.10E-04
24	GO:0017118: lipoyltransferase activity	8.10E-04
25	GO:0004814: arginine-tRNA ligase activity	8.10E-04
26	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	8.10E-04
27	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.10E-04
28	GO:0047372: acylglycerol lipase activity	9.70E-04
29	GO:0016788: hydrolase activity, acting on ester bonds	1.10E-03
30	GO:0002161: aminoacyl-tRNA editing activity	1.31E-03
31	GO:0004148: dihydrolipoyl dehydrogenase activity	1.31E-03
32	GO:0004049: anthranilate synthase activity	1.31E-03
33	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.31E-03
34	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.31E-03
35	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.89E-03
36	GO:0003999: adenine phosphoribosyltransferase activity	1.89E-03
37	GO:0016851: magnesium chelatase activity	1.89E-03
38	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.54E-03
39	GO:0009044: xylan 1,4-beta-xylosidase activity	2.54E-03
40	GO:0046556: alpha-L-arabinofuranosidase activity	2.54E-03
41	GO:0008409: 5'-3' exonuclease activity	2.54E-03
42	GO:0016846: carbon-sulfur lyase activity	3.25E-03
43	GO:0004040: amidase activity	3.25E-03
44	GO:0016208: AMP binding	4.02E-03
45	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	4.02E-03
46	GO:0102229: amylopectin maltohydrolase activity	4.02E-03
47	GO:0042578: phosphoric ester hydrolase activity	4.02E-03
48	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.02E-03
49	GO:0003777: microtubule motor activity	4.05E-03
50	GO:0016832: aldehyde-lyase activity	4.85E-03
51	GO:0016161: beta-amylase activity	4.85E-03
52	GO:0003730: mRNA 3'-UTR binding	4.85E-03
53	GO:0009927: histidine phosphotransfer kinase activity	4.85E-03
54	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.85E-03
55	GO:0004124: cysteine synthase activity	4.85E-03
56	GO:0016791: phosphatase activity	5.81E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	6.65E-03
58	GO:0043022: ribosome binding	6.65E-03
59	GO:0052689: carboxylic ester hydrolase activity	7.51E-03
60	GO:0008173: RNA methyltransferase activity	7.64E-03
61	GO:0016829: lyase activity	8.22E-03
62	GO:0008236: serine-type peptidase activity	8.62E-03
63	GO:0005381: iron ion transmembrane transporter activity	9.74E-03
64	GO:0004713: protein tyrosine kinase activity	1.09E-02
65	GO:0003993: acid phosphatase activity	1.21E-02
66	GO:0000049: tRNA binding	1.33E-02
67	GO:0030246: carbohydrate binding	1.41E-02
68	GO:0004089: carbonate dehydratase activity	1.45E-02
69	GO:0009982: pseudouridine synthase activity	1.45E-02
70	GO:0004185: serine-type carboxypeptidase activity	1.49E-02
71	GO:0042802: identical protein binding	1.52E-02
72	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.58E-02
73	GO:0035091: phosphatidylinositol binding	1.61E-02
74	GO:0003887: DNA-directed DNA polymerase activity	1.85E-02
75	GO:0005528: FK506 binding	1.99E-02
76	GO:0003714: transcription corepressor activity	1.99E-02
77	GO:0005385: zinc ion transmembrane transporter activity	1.99E-02
78	GO:0015079: potassium ion transmembrane transporter activity	2.14E-02
79	GO:0008324: cation transmembrane transporter activity	2.14E-02
80	GO:0051087: chaperone binding	2.14E-02
81	GO:0004176: ATP-dependent peptidase activity	2.29E-02
82	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.44E-02
83	GO:0016760: cellulose synthase (UDP-forming) activity	2.60E-02
84	GO:0004812: aminoacyl-tRNA ligase activity	2.92E-02
85	GO:0008536: Ran GTPase binding	3.25E-02
86	GO:0008080: N-acetyltransferase activity	3.25E-02
87	GO:0001085: RNA polymerase II transcription factor binding	3.25E-02
88	GO:0005524: ATP binding	3.31E-02
89	GO:0016740: transferase activity	3.67E-02
90	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.68E-02
91	GO:0051015: actin filament binding	4.14E-02
92	GO:0004674: protein serine/threonine kinase activity	4.20E-02
93	GO:0016757: transferase activity, transferring glycosyl groups	4.28E-02
94	GO:0016759: cellulose synthase activity	4.33E-02
95	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.52E-02
96	GO:0008237: metallopeptidase activity	4.52E-02
97	GO:0004519: endonuclease activity	4.60E-02
98	GO:0016597: amino acid binding	4.71E-02
99	GO:0015250: water channel activity	4.91E-02