Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18990

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0009606: tropism0.00E+00
3GO:1901698: response to nitrogen compound0.00E+00
4GO:1903224: regulation of endodermal cell differentiation0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0035884: arabinan biosynthetic process0.00E+00
7GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
8GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
9GO:0097164: ammonium ion metabolic process0.00E+00
10GO:0045184: establishment of protein localization0.00E+00
11GO:0015843: methylammonium transport0.00E+00
12GO:0031222: arabinan catabolic process0.00E+00
13GO:0070979: protein K11-linked ubiquitination0.00E+00
14GO:0042794: rRNA transcription from plastid promoter0.00E+00
15GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
16GO:0042793: transcription from plastid promoter2.47E-09
17GO:0009734: auxin-activated signaling pathway4.63E-09
18GO:0046620: regulation of organ growth3.80E-08
19GO:0009733: response to auxin1.06E-06
20GO:0009926: auxin polar transport8.38E-06
21GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.66E-05
22GO:0007389: pattern specification process1.25E-04
23GO:0009416: response to light stimulus1.28E-04
24GO:0051513: regulation of monopolar cell growth1.86E-04
25GO:0009658: chloroplast organization1.92E-04
26GO:0046656: folic acid biosynthetic process3.10E-04
27GO:2000038: regulation of stomatal complex development3.10E-04
28GO:0032876: negative regulation of DNA endoreduplication4.62E-04
29GO:0010252: auxin homeostasis5.70E-04
30GO:0009913: epidermal cell differentiation6.39E-04
31GO:0090558: plant epidermis development8.26E-04
32GO:0010480: microsporocyte differentiation8.26E-04
33GO:1903866: palisade mesophyll development8.26E-04
34GO:0035987: endodermal cell differentiation8.26E-04
35GO:0043609: regulation of carbon utilization8.26E-04
36GO:0006436: tryptophanyl-tRNA aminoacylation8.26E-04
37GO:0000066: mitochondrial ornithine transport8.26E-04
38GO:0015904: tetracycline transport8.26E-04
39GO:0034757: negative regulation of iron ion transport8.26E-04
40GO:0042659: regulation of cell fate specification8.26E-04
41GO:0046654: tetrahydrofolate biosynthetic process8.44E-04
42GO:0009451: RNA modification1.15E-03
43GO:0000160: phosphorelay signal transduction system1.21E-03
44GO:0042255: ribosome assembly1.34E-03
45GO:0000105: histidine biosynthetic process1.34E-03
46GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.35E-03
47GO:0070981: L-asparagine biosynthetic process1.79E-03
48GO:1902326: positive regulation of chlorophyll biosynthetic process1.79E-03
49GO:0010271: regulation of chlorophyll catabolic process1.79E-03
50GO:0010569: regulation of double-strand break repair via homologous recombination1.79E-03
51GO:0018026: peptidyl-lysine monomethylation1.79E-03
52GO:2000039: regulation of trichome morphogenesis1.79E-03
53GO:0071497: cellular response to freezing1.79E-03
54GO:0009662: etioplast organization1.79E-03
55GO:1900033: negative regulation of trichome patterning1.79E-03
56GO:1904143: positive regulation of carotenoid biosynthetic process1.79E-03
57GO:0080009: mRNA methylation1.79E-03
58GO:0006529: asparagine biosynthetic process1.79E-03
59GO:2000123: positive regulation of stomatal complex development1.79E-03
60GO:0032502: developmental process2.91E-03
61GO:0090391: granum assembly2.96E-03
62GO:0006000: fructose metabolic process2.96E-03
63GO:0031145: anaphase-promoting complex-dependent catabolic process2.96E-03
64GO:0001578: microtubule bundle formation2.96E-03
65GO:0006760: folic acid-containing compound metabolic process2.96E-03
66GO:0071705: nitrogen compound transport2.96E-03
67GO:0090708: specification of plant organ axis polarity2.96E-03
68GO:0080117: secondary growth2.96E-03
69GO:0009736: cytokinin-activated signaling pathway3.81E-03
70GO:0040008: regulation of growth3.82E-03
71GO:2000012: regulation of auxin polar transport4.13E-03
72GO:0009767: photosynthetic electron transport chain4.13E-03
73GO:0005975: carbohydrate metabolic process4.17E-03
74GO:0010027: thylakoid membrane organization4.30E-03
75GO:0019048: modulation by virus of host morphology or physiology4.32E-03
76GO:0015696: ammonium transport4.32E-03
77GO:0046739: transport of virus in multicellular host4.32E-03
78GO:2000904: regulation of starch metabolic process4.32E-03
79GO:0051289: protein homotetramerization4.32E-03
80GO:0031048: chromatin silencing by small RNA4.32E-03
81GO:0043572: plastid fission4.32E-03
82GO:1902476: chloride transmembrane transport4.32E-03
83GO:0007231: osmosensory signaling pathway4.32E-03
84GO:0030071: regulation of mitotic metaphase/anaphase transition4.32E-03
85GO:0051639: actin filament network formation4.32E-03
86GO:0010239: chloroplast mRNA processing4.32E-03
87GO:0009800: cinnamic acid biosynthetic process4.32E-03
88GO:0044211: CTP salvage4.32E-03
89GO:0009739: response to gibberellin5.06E-03
90GO:0006357: regulation of transcription from RNA polymerase II promoter5.26E-03
91GO:0010411: xyloglucan metabolic process5.31E-03
92GO:0006021: inositol biosynthetic process5.84E-03
93GO:0051567: histone H3-K9 methylation5.84E-03
94GO:0044206: UMP salvage5.84E-03
95GO:0006346: methylation-dependent chromatin silencing5.84E-03
96GO:1901141: regulation of lignin biosynthetic process5.84E-03
97GO:0006479: protein methylation5.84E-03
98GO:0048629: trichome patterning5.84E-03
99GO:0006468: protein phosphorylation5.84E-03
100GO:0051764: actin crosslink formation5.84E-03
101GO:0051322: anaphase5.84E-03
102GO:0071249: cellular response to nitrate5.84E-03
103GO:0030104: water homeostasis5.84E-03
104GO:0033500: carbohydrate homeostasis5.84E-03
105GO:0072488: ammonium transmembrane transport5.84E-03
106GO:0022622: root system development5.84E-03
107GO:0005992: trehalose biosynthetic process6.51E-03
108GO:0048497: maintenance of floral organ identity7.52E-03
109GO:0006544: glycine metabolic process7.52E-03
110GO:1902183: regulation of shoot apical meristem development7.52E-03
111GO:0016123: xanthophyll biosynthetic process7.52E-03
112GO:0010438: cellular response to sulfur starvation7.52E-03
113GO:0080110: sporopollenin biosynthetic process7.52E-03
114GO:0010158: abaxial cell fate specification7.52E-03
115GO:0030308: negative regulation of cell growth7.52E-03
116GO:0010375: stomatal complex patterning7.52E-03
117GO:0071555: cell wall organization7.74E-03
118GO:0006306: DNA methylation7.92E-03
119GO:0016998: cell wall macromolecule catabolic process7.92E-03
120GO:0009751: response to salicylic acid8.44E-03
121GO:0016554: cytidine to uridine editing9.36E-03
122GO:0010315: auxin efflux9.36E-03
123GO:0006559: L-phenylalanine catabolic process9.36E-03
124GO:0016458: gene silencing9.36E-03
125GO:0006206: pyrimidine nucleobase metabolic process9.36E-03
126GO:0018258: protein O-linked glycosylation via hydroxyproline9.36E-03
127GO:0006563: L-serine metabolic process9.36E-03
128GO:0010405: arabinogalactan protein metabolic process9.36E-03
129GO:0006655: phosphatidylglycerol biosynthetic process9.36E-03
130GO:1902456: regulation of stomatal opening9.36E-03
131GO:0048831: regulation of shoot system development9.36E-03
132GO:0010082: regulation of root meristem growth9.49E-03
133GO:0030154: cell differentiation9.59E-03
134GO:0010067: procambium histogenesis1.13E-02
135GO:0009942: longitudinal axis specification1.13E-02
136GO:0048509: regulation of meristem development1.13E-02
137GO:0030488: tRNA methylation1.13E-02
138GO:1901259: chloroplast rRNA processing1.13E-02
139GO:2000037: regulation of stomatal complex patterning1.13E-02
140GO:2000067: regulation of root morphogenesis1.13E-02
141GO:0071470: cellular response to osmotic stress1.13E-02
142GO:0042546: cell wall biogenesis1.20E-02
143GO:0010087: phloem or xylem histogenesis1.22E-02
144GO:0009741: response to brassinosteroid1.31E-02
145GO:0009958: positive gravitropism1.31E-02
146GO:0015937: coenzyme A biosynthetic process1.34E-02
147GO:0010050: vegetative phase change1.34E-02
148GO:0048437: floral organ development1.34E-02
149GO:0030307: positive regulation of cell growth1.34E-02
150GO:0009396: folic acid-containing compound biosynthetic process1.34E-02
151GO:0010103: stomatal complex morphogenesis1.34E-02
152GO:0032880: regulation of protein localization1.34E-02
153GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.34E-02
154GO:0009610: response to symbiotic fungus1.34E-02
155GO:0006955: immune response1.34E-02
156GO:0007050: cell cycle arrest1.34E-02
157GO:0006821: chloride transport1.34E-02
158GO:0009646: response to absence of light1.41E-02
159GO:0048825: cotyledon development1.52E-02
160GO:0009850: auxin metabolic process1.57E-02
161GO:0009787: regulation of abscisic acid-activated signaling pathway1.57E-02
162GO:0032875: regulation of DNA endoreduplication1.57E-02
163GO:0006353: DNA-templated transcription, termination1.57E-02
164GO:0048766: root hair initiation1.57E-02
165GO:0055075: potassium ion homeostasis1.57E-02
166GO:0010439: regulation of glucosinolate biosynthetic process1.57E-02
167GO:0001522: pseudouridine synthesis1.57E-02
168GO:0010583: response to cyclopentenone1.74E-02
169GO:0007186: G-protein coupled receptor signaling pathway1.81E-02
170GO:0010497: plasmodesmata-mediated intercellular transport1.81E-02
171GO:0006002: fructose 6-phosphate metabolic process1.81E-02
172GO:0009827: plant-type cell wall modification1.81E-02
173GO:0008380: RNA splicing1.97E-02
174GO:0009828: plant-type cell wall loosening1.97E-02
175GO:2000024: regulation of leaf development2.05E-02
176GO:0000373: Group II intron splicing2.05E-02
177GO:0000902: cell morphogenesis2.05E-02
178GO:0009051: pentose-phosphate shunt, oxidative branch2.05E-02
179GO:1900865: chloroplast RNA modification2.31E-02
180GO:0031425: chloroplast RNA processing2.31E-02
181GO:0042761: very long-chain fatty acid biosynthetic process2.31E-02
182GO:0009638: phototropism2.31E-02
183GO:2000280: regulation of root development2.31E-02
184GO:0035999: tetrahydrofolate interconversion2.31E-02
185GO:0006349: regulation of gene expression by genetic imprinting2.31E-02
186GO:0030422: production of siRNA involved in RNA interference2.59E-02
187GO:0048829: root cap development2.59E-02
188GO:0006949: syncytium formation2.59E-02
189GO:0006259: DNA metabolic process2.59E-02
190GO:0031627: telomeric loop formation2.59E-02
191GO:0010048: vernalization response2.59E-02
192GO:0009742: brassinosteroid mediated signaling pathway2.81E-02
193GO:0009773: photosynthetic electron transport in photosystem I2.87E-02
194GO:0009682: induced systemic resistance2.87E-02
195GO:0048229: gametophyte development2.87E-02
196GO:0010015: root morphogenesis2.87E-02
197GO:0006816: calcium ion transport2.87E-02
198GO:0006265: DNA topological change2.87E-02
199GO:0048481: plant ovule development3.08E-02
200GO:0016024: CDP-diacylglycerol biosynthetic process3.16E-02
201GO:0010582: floral meristem determinacy3.16E-02
202GO:0008361: regulation of cell size3.16E-02
203GO:0006790: sulfur compound metabolic process3.16E-02
204GO:0015706: nitrate transport3.16E-02
205GO:0016310: phosphorylation3.32E-02
206GO:0006811: ion transport3.40E-02
207GO:0010628: positive regulation of gene expression3.46E-02
208GO:0010102: lateral root morphogenesis3.46E-02
209GO:0006006: glucose metabolic process3.46E-02
210GO:0009785: blue light signaling pathway3.46E-02
211GO:0009691: cytokinin biosynthetic process3.46E-02
212GO:0010075: regulation of meristem growth3.46E-02
213GO:0010588: cotyledon vascular tissue pattern formation3.46E-02
214GO:0009723: response to ethylene3.59E-02
215GO:0006541: glutamine metabolic process3.77E-02
216GO:0010020: chloroplast fission3.77E-02
217GO:0010223: secondary shoot formation3.77E-02
218GO:0009934: regulation of meristem structural organization3.77E-02
219GO:0010143: cutin biosynthetic process3.77E-02
220GO:0010207: photosystem II assembly3.77E-02
221GO:0080167: response to karrikin3.97E-02
222GO:0080188: RNA-directed DNA methylation4.09E-02
223GO:0010167: response to nitrate4.09E-02
224GO:0090351: seedling development4.09E-02
225GO:0070588: calcium ion transmembrane transport4.09E-02
226GO:0046854: phosphatidylinositol phosphorylation4.09E-02
227GO:0009790: embryo development4.18E-02
228GO:0006071: glycerol metabolic process4.42E-02
229GO:0006833: water transport4.42E-02
230GO:0006839: mitochondrial transport4.45E-02
231GO:0080147: root hair cell development4.76E-02
232GO:0051017: actin filament bundle assembly4.76E-02
233GO:0009944: polarity specification of adaxial/abaxial axis4.76E-02
RankGO TermAdjusted P value
1GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
2GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
3GO:0004401: histidinol-phosphatase activity0.00E+00
4GO:0070009: serine-type aminopeptidase activity0.00E+00
5GO:0052834: inositol monophosphate phosphatase activity0.00E+00
6GO:0071633: dihydroceramidase activity0.00E+00
7GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
8GO:0001872: (1->3)-beta-D-glucan binding1.86E-04
9GO:0003727: single-stranded RNA binding1.98E-04
10GO:0009672: auxin:proton symporter activity2.12E-04
11GO:0010329: auxin efflux transmembrane transporter activity4.68E-04
12GO:0016274: protein-arginine N-methyltransferase activity8.26E-04
13GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.26E-04
14GO:0004156: dihydropteroate synthase activity8.26E-04
15GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity8.26E-04
16GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity8.26E-04
17GO:0005290: L-histidine transmembrane transporter activity8.26E-04
18GO:0004008: copper-exporting ATPase activity8.26E-04
19GO:0004071: aspartate-ammonia ligase activity8.26E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity8.26E-04
21GO:0004830: tryptophan-tRNA ligase activity8.26E-04
22GO:0052381: tRNA dimethylallyltransferase activity8.26E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity8.26E-04
24GO:0004016: adenylate cyclase activity8.26E-04
25GO:0004400: histidinol-phosphate transaminase activity8.26E-04
26GO:0004632: phosphopantothenate--cysteine ligase activity8.26E-04
27GO:0042834: peptidoglycan binding8.26E-04
28GO:0004674: protein serine/threonine kinase activity9.73E-04
29GO:0004519: endonuclease activity1.11E-03
30GO:0004650: polygalacturonase activity1.33E-03
31GO:0004150: dihydroneopterin aldolase activity1.79E-03
32GO:0008805: carbon-monoxide oxygenase activity1.79E-03
33GO:0008934: inositol monophosphate 1-phosphatase activity1.79E-03
34GO:0008493: tetracycline transporter activity1.79E-03
35GO:0052833: inositol monophosphate 4-phosphatase activity1.79E-03
36GO:0000064: L-ornithine transmembrane transporter activity1.79E-03
37GO:0015929: hexosaminidase activity1.79E-03
38GO:0004563: beta-N-acetylhexosaminidase activity1.79E-03
39GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.79E-03
40GO:0009884: cytokinin receptor activity1.79E-03
41GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.79E-03
42GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.79E-03
43GO:0102083: 7,8-dihydromonapterin aldolase activity1.79E-03
44GO:0052832: inositol monophosphate 3-phosphatase activity1.79E-03
45GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.79E-03
46GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.27E-03
47GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.60E-03
48GO:0016762: xyloglucan:xyloglucosyl transferase activity2.67E-03
49GO:0004805: trehalose-phosphatase activity2.73E-03
50GO:0052722: fatty acid in-chain hydroxylase activity2.96E-03
51GO:0017150: tRNA dihydrouridine synthase activity2.96E-03
52GO:0045548: phenylalanine ammonia-lyase activity2.96E-03
53GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.96E-03
54GO:0016805: dipeptidase activity2.96E-03
55GO:0005034: osmosensor activity2.96E-03
56GO:0016707: gibberellin 3-beta-dioxygenase activity2.96E-03
57GO:0000156: phosphorelay response regulator activity3.16E-03
58GO:0015181: arginine transmembrane transporter activity4.32E-03
59GO:0035197: siRNA binding4.32E-03
60GO:0015189: L-lysine transmembrane transporter activity4.32E-03
61GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.67E-03
62GO:0016798: hydrolase activity, acting on glycosyl bonds5.31E-03
63GO:0005253: anion channel activity5.84E-03
64GO:0046556: alpha-L-arabinofuranosidase activity5.84E-03
65GO:0004930: G-protein coupled receptor activity5.84E-03
66GO:0016279: protein-lysine N-methyltransferase activity5.84E-03
67GO:0004845: uracil phosphoribosyltransferase activity5.84E-03
68GO:0004345: glucose-6-phosphate dehydrogenase activity5.84E-03
69GO:0016301: kinase activity7.50E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor7.52E-03
71GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.52E-03
72GO:0008725: DNA-3-methyladenine glycosylase activity7.52E-03
73GO:0004372: glycine hydroxymethyltransferase activity7.52E-03
74GO:0004523: RNA-DNA hybrid ribonuclease activity7.52E-03
75GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors8.22E-03
76GO:0008519: ammonium transmembrane transporter activity9.36E-03
77GO:0005247: voltage-gated chloride channel activity9.36E-03
78GO:2001070: starch binding9.36E-03
79GO:0004605: phosphatidate cytidylyltransferase activity9.36E-03
80GO:1990714: hydroxyproline O-galactosyltransferase activity9.36E-03
81GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.13E-02
82GO:0016832: aldehyde-lyase activity1.13E-02
83GO:0004656: procollagen-proline 4-dioxygenase activity1.13E-02
84GO:0019900: kinase binding1.13E-02
85GO:0008195: phosphatidate phosphatase activity1.13E-02
86GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.13E-02
87GO:0004849: uridine kinase activity1.13E-02
88GO:0001085: RNA polymerase II transcription factor binding1.31E-02
89GO:0004518: nuclease activity1.74E-02
90GO:0043565: sequence-specific DNA binding1.79E-02
91GO:0008173: RNA methyltransferase activity1.81E-02
92GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.81E-02
93GO:0005375: copper ion transmembrane transporter activity1.81E-02
94GO:0003777: microtubule motor activity1.90E-02
95GO:0004871: signal transducer activity1.92E-02
96GO:0004672: protein kinase activity2.00E-02
97GO:0008889: glycerophosphodiester phosphodiesterase activity2.05E-02
98GO:0003723: RNA binding2.07E-02
99GO:0004673: protein histidine kinase activity2.59E-02
100GO:0003700: transcription factor activity, sequence-specific DNA binding2.66E-02
101GO:0030247: polysaccharide binding2.78E-02
102GO:0005089: Rho guanyl-nucleotide exchange factor activity2.87E-02
103GO:0003691: double-stranded telomeric DNA binding2.87E-02
104GO:0016788: hydrolase activity, acting on ester bonds2.98E-02
105GO:0003682: chromatin binding3.15E-02
106GO:0004521: endoribonuclease activity3.16E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity3.46E-02
108GO:0019843: rRNA binding3.46E-02
109GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.46E-02
110GO:0004089: carbonate dehydratase activity3.46E-02
111GO:0031072: heat shock protein binding3.46E-02
112GO:0000155: phosphorelay sensor kinase activity3.46E-02
113GO:0005262: calcium channel activity3.46E-02
114GO:0009982: pseudouridine synthase activity3.46E-02
115GO:0003725: double-stranded RNA binding3.46E-02
116GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.57E-02
117GO:0008083: growth factor activity3.77E-02
118GO:0016829: lyase activity3.81E-02
119GO:0003677: DNA binding3.82E-02
120GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.06E-02
121GO:0004970: ionotropic glutamate receptor activity4.09E-02
122GO:0005217: intracellular ligand-gated ion channel activity4.09E-02
123GO:0004712: protein serine/threonine/tyrosine kinase activity4.26E-02
124GO:0044212: transcription regulatory region DNA binding4.26E-02
125GO:0015144: carbohydrate transmembrane transporter activity4.31E-02
126GO:0052689: carboxylic ester hydrolase activity4.58E-02
127GO:0008134: transcription factor binding4.76E-02
128GO:0031418: L-ascorbic acid binding4.76E-02
129GO:0005351: sugar:proton symporter activity4.99E-02
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Gene type



Gene DE type