Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G18620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:1905421: regulation of plant organ morphogenesis0.00E+00
3GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
4GO:0030155: regulation of cell adhesion0.00E+00
5GO:0090071: negative regulation of ribosome biogenesis0.00E+00
6GO:0009606: tropism0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0007638: mechanosensory behavior0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0009658: chloroplast organization5.84E-06
14GO:0009451: RNA modification1.05E-05
15GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.53E-05
16GO:0046620: regulation of organ growth4.26E-05
17GO:0009657: plastid organization5.94E-05
18GO:0007389: pattern specification process5.94E-05
19GO:0016556: mRNA modification1.08E-04
20GO:0009734: auxin-activated signaling pathway1.68E-04
21GO:2000038: regulation of stomatal complex development1.84E-04
22GO:0009926: auxin polar transport1.89E-04
23GO:0010252: auxin homeostasis2.57E-04
24GO:0009733: response to auxin3.77E-04
25GO:0042793: transcription from plastid promoter3.92E-04
26GO:0009944: polarity specification of adaxial/abaxial axis4.47E-04
27GO:1901259: chloroplast rRNA processing5.20E-04
28GO:0034757: negative regulation of iron ion transport5.95E-04
29GO:0034970: histone H3-R2 methylation5.95E-04
30GO:0042659: regulation of cell fate specification5.95E-04
31GO:0070509: calcium ion import5.95E-04
32GO:0034972: histone H3-R26 methylation5.95E-04
33GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.95E-04
34GO:0090558: plant epidermis development5.95E-04
35GO:0010063: positive regulation of trichoblast fate specification5.95E-04
36GO:0010480: microsporocyte differentiation5.95E-04
37GO:0034971: histone H3-R17 methylation5.95E-04
38GO:0035987: endodermal cell differentiation5.95E-04
39GO:0006436: tryptophanyl-tRNA aminoacylation5.95E-04
40GO:0048437: floral organ development6.66E-04
41GO:0010103: stomatal complex morphogenesis6.66E-04
42GO:0009416: response to light stimulus1.07E-03
43GO:0000373: Group II intron splicing1.20E-03
44GO:0000902: cell morphogenesis1.20E-03
45GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.28E-03
46GO:2000123: positive regulation of stomatal complex development1.28E-03
47GO:0010254: nectary development1.28E-03
48GO:1900871: chloroplast mRNA modification1.28E-03
49GO:0070981: L-asparagine biosynthetic process1.28E-03
50GO:1902326: positive regulation of chlorophyll biosynthetic process1.28E-03
51GO:0010271: regulation of chlorophyll catabolic process1.28E-03
52GO:0010434: bract formation1.28E-03
53GO:0018026: peptidyl-lysine monomethylation1.28E-03
54GO:0009662: etioplast organization1.28E-03
55GO:1900033: negative regulation of trichome patterning1.28E-03
56GO:0009220: pyrimidine ribonucleotide biosynthetic process1.28E-03
57GO:0048439: flower morphogenesis1.28E-03
58GO:1904143: positive regulation of carotenoid biosynthetic process1.28E-03
59GO:0080009: mRNA methylation1.28E-03
60GO:0006529: asparagine biosynthetic process1.28E-03
61GO:1900865: chloroplast RNA modification1.42E-03
62GO:0031425: chloroplast RNA processing1.42E-03
63GO:0032502: developmental process1.54E-03
64GO:0040008: regulation of growth1.57E-03
65GO:0009089: lysine biosynthetic process via diaminopimelate1.92E-03
66GO:0009954: proximal/distal pattern formation2.11E-03
67GO:0009432: SOS response2.11E-03
68GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.11E-03
69GO:0001927: exocyst assembly2.11E-03
70GO:0045910: negative regulation of DNA recombination2.11E-03
71GO:0048281: inflorescence morphogenesis2.11E-03
72GO:0090708: specification of plant organ axis polarity2.11E-03
73GO:0080117: secondary growth2.11E-03
74GO:0006954: inflammatory response2.11E-03
75GO:0042780: tRNA 3'-end processing2.11E-03
76GO:0001578: microtubule bundle formation2.11E-03
77GO:0010582: floral meristem determinacy2.20E-03
78GO:0009767: photosynthetic electron transport chain2.51E-03
79GO:0000730: DNA recombinase assembly3.06E-03
80GO:1902476: chloride transmembrane transport3.06E-03
81GO:0010071: root meristem specification3.06E-03
82GO:0007231: osmosensory signaling pathway3.06E-03
83GO:0010239: chloroplast mRNA processing3.06E-03
84GO:0044211: CTP salvage3.06E-03
85GO:0019048: modulation by virus of host morphology or physiology3.06E-03
86GO:0051601: exocyst localization3.06E-03
87GO:0046739: transport of virus in multicellular host3.06E-03
88GO:2000904: regulation of starch metabolic process3.06E-03
89GO:0051289: protein homotetramerization3.06E-03
90GO:0031048: chromatin silencing by small RNA3.06E-03
91GO:0010148: transpiration3.06E-03
92GO:0070588: calcium ion transmembrane transport3.18E-03
93GO:0048481: plant ovule development3.19E-03
94GO:0006479: protein methylation4.12E-03
95GO:0048629: trichome patterning4.12E-03
96GO:0051322: anaphase4.12E-03
97GO:0030104: water homeostasis4.12E-03
98GO:0033500: carbohydrate homeostasis4.12E-03
99GO:0044205: 'de novo' UMP biosynthetic process4.12E-03
100GO:0051567: histone H3-K9 methylation4.12E-03
101GO:0044206: UMP salvage4.12E-03
102GO:0051302: regulation of cell division4.35E-03
103GO:0006418: tRNA aminoacylation for protein translation4.35E-03
104GO:0016998: cell wall macromolecule catabolic process4.78E-03
105GO:1902183: regulation of shoot apical meristem development5.30E-03
106GO:0016123: xanthophyll biosynthetic process5.30E-03
107GO:0010158: abaxial cell fate specification5.30E-03
108GO:0032876: negative regulation of DNA endoreduplication5.30E-03
109GO:0030308: negative regulation of cell growth5.30E-03
110GO:0010375: stomatal complex patterning5.30E-03
111GO:0006544: glycine metabolic process5.30E-03
112GO:0048497: maintenance of floral organ identity5.30E-03
113GO:0009790: embryo development5.44E-03
114GO:0010082: regulation of root meristem growth5.72E-03
115GO:0001944: vasculature development5.72E-03
116GO:0042549: photosystem II stabilization6.57E-03
117GO:0009959: negative gravitropism6.57E-03
118GO:0009913: epidermal cell differentiation6.57E-03
119GO:0006655: phosphatidylglycerol biosynthetic process6.57E-03
120GO:0048831: regulation of shoot system development6.57E-03
121GO:0016554: cytidine to uridine editing6.57E-03
122GO:0010315: auxin efflux6.57E-03
123GO:0006206: pyrimidine nucleobase metabolic process6.57E-03
124GO:0016458: gene silencing6.57E-03
125GO:0018258: protein O-linked glycosylation via hydroxyproline6.57E-03
126GO:0006563: L-serine metabolic process6.57E-03
127GO:0010405: arabinogalactan protein metabolic process6.57E-03
128GO:0006468: protein phosphorylation6.65E-03
129GO:0006508: proteolysis7.34E-03
130GO:0009741: response to brassinosteroid7.89E-03
131GO:2000037: regulation of stomatal complex patterning7.94E-03
132GO:2000067: regulation of root morphogenesis7.94E-03
133GO:0009082: branched-chain amino acid biosynthetic process7.94E-03
134GO:0010067: procambium histogenesis7.94E-03
135GO:0017148: negative regulation of translation7.94E-03
136GO:0009942: longitudinal axis specification7.94E-03
137GO:0048509: regulation of meristem development7.94E-03
138GO:0009099: valine biosynthetic process7.94E-03
139GO:0030488: tRNA methylation7.94E-03
140GO:0009664: plant-type cell wall organization8.02E-03
141GO:0009646: response to absence of light8.49E-03
142GO:0051603: proteolysis involved in cellular protein catabolic process9.17E-03
143GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway9.40E-03
144GO:0006955: immune response9.40E-03
145GO:0048528: post-embryonic root development9.40E-03
146GO:0006821: chloride transport9.40E-03
147GO:0042148: strand invasion9.40E-03
148GO:0070370: cellular heat acclimation9.40E-03
149GO:0010050: vegetative phase change9.40E-03
150GO:0010444: guard mother cell differentiation9.40E-03
151GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.40E-03
152GO:0010583: response to cyclopentenone1.04E-02
153GO:0001522: pseudouridine synthesis1.10E-02
154GO:0009850: auxin metabolic process1.10E-02
155GO:0030162: regulation of proteolysis1.10E-02
156GO:0042255: ribosome assembly1.10E-02
157GO:0048766: root hair initiation1.10E-02
158GO:0070413: trehalose metabolism in response to stress1.10E-02
159GO:0055075: potassium ion homeostasis1.10E-02
160GO:0048364: root development1.15E-02
161GO:0001558: regulation of cell growth1.26E-02
162GO:0009827: plant-type cell wall modification1.26E-02
163GO:0010212: response to ionizing radiation1.26E-02
164GO:0060321: acceptance of pollen1.26E-02
165GO:0009097: isoleucine biosynthetic process1.26E-02
166GO:0010497: plasmodesmata-mediated intercellular transport1.26E-02
167GO:0009553: embryo sac development1.33E-02
168GO:0051607: defense response to virus1.34E-02
169GO:0042254: ribosome biogenesis1.41E-02
170GO:0001666: response to hypoxia1.42E-02
171GO:0009051: pentose-phosphate shunt, oxidative branch1.43E-02
172GO:2000024: regulation of leaf development1.43E-02
173GO:0006098: pentose-phosphate shunt1.43E-02
174GO:0009742: brassinosteroid mediated signaling pathway1.49E-02
175GO:0071555: cell wall organization1.52E-02
176GO:0005975: carbohydrate metabolic process1.52E-02
177GO:0009638: phototropism1.61E-02
178GO:0042761: very long-chain fatty acid biosynthetic process1.61E-02
179GO:2000280: regulation of root development1.61E-02
180GO:0006349: regulation of gene expression by genetic imprinting1.61E-02
181GO:0035999: tetrahydrofolate interconversion1.61E-02
182GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.61E-02
183GO:0010411: xyloglucan metabolic process1.67E-02
184GO:0009793: embryo development ending in seed dormancy1.76E-02
185GO:0009641: shade avoidance1.80E-02
186GO:0006298: mismatch repair1.80E-02
187GO:0006259: DNA metabolic process1.80E-02
188GO:0010048: vernalization response1.80E-02
189GO:0006535: cysteine biosynthetic process from serine1.80E-02
190GO:0030422: production of siRNA involved in RNA interference1.80E-02
191GO:0080167: response to karrikin1.89E-02
192GO:0000160: phosphorelay signal transduction system1.95E-02
193GO:0010015: root morphogenesis2.00E-02
194GO:0006265: DNA topological change2.00E-02
195GO:0006816: calcium ion transport2.00E-02
196GO:0048229: gametophyte development2.00E-02
197GO:0008361: regulation of cell size2.20E-02
198GO:0006312: mitotic recombination2.20E-02
199GO:0016024: CDP-diacylglycerol biosynthetic process2.20E-02
200GO:0045037: protein import into chloroplast stroma2.20E-02
201GO:0050826: response to freezing2.41E-02
202GO:0010075: regulation of meristem growth2.41E-02
203GO:0006094: gluconeogenesis2.41E-02
204GO:0009785: blue light signaling pathway2.41E-02
205GO:0006006: glucose metabolic process2.41E-02
206GO:0009691: cytokinin biosynthetic process2.41E-02
207GO:0009934: regulation of meristem structural organization2.63E-02
208GO:0010207: photosystem II assembly2.63E-02
209GO:0006541: glutamine metabolic process2.63E-02
210GO:0010020: chloroplast fission2.63E-02
211GO:0010223: secondary shoot formation2.63E-02
212GO:0007623: circadian rhythm2.76E-02
213GO:0006071: glycerol metabolic process3.08E-02
214GO:0006833: water transport3.08E-02
215GO:0042546: cell wall biogenesis3.17E-02
216GO:0005992: trehalose biosynthetic process3.31E-02
217GO:0019344: cysteine biosynthetic process3.31E-02
218GO:0009116: nucleoside metabolic process3.31E-02
219GO:0080147: root hair cell development3.31E-02
220GO:0006825: copper ion transport3.56E-02
221GO:0006306: DNA methylation3.80E-02
222GO:0031348: negative regulation of defense response4.06E-02
223GO:0009736: cytokinin-activated signaling pathway4.09E-02
224GO:0010227: floral organ abscission4.32E-02
225GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.32E-02
226GO:0071215: cellular response to abscisic acid stimulus4.32E-02
227GO:0009909: regulation of flower development4.53E-02
228GO:0010089: xylem development4.58E-02
229GO:0042127: regulation of cell proliferation4.58E-02
230GO:0006284: base-excision repair4.58E-02
231GO:0006096: glycolytic process4.83E-02
232GO:0070417: cellular response to cold4.85E-02
233GO:0048367: shoot system development4.98E-02
234GO:0048316: seed development4.98E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
3GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0004056: argininosuccinate lyase activity0.00E+00
6GO:0004519: endonuclease activity2.25E-07
7GO:0009672: auxin:proton symporter activity1.04E-04
8GO:0001872: (1->3)-beta-D-glucan binding1.08E-04
9GO:0010329: auxin efflux transmembrane transporter activity2.42E-04
10GO:0003723: RNA binding3.65E-04
11GO:0008836: diaminopimelate decarboxylase activity5.95E-04
12GO:0016274: protein-arginine N-methyltransferase activity5.95E-04
13GO:0042834: peptidoglycan binding5.95E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.95E-04
15GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.95E-04
16GO:0004008: copper-exporting ATPase activity5.95E-04
17GO:0004071: aspartate-ammonia ligase activity5.95E-04
18GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.95E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.95E-04
20GO:0004830: tryptophan-tRNA ligase activity5.95E-04
21GO:0052381: tRNA dimethylallyltransferase activity5.95E-04
22GO:0010285: L,L-diaminopimelate aminotransferase activity5.95E-04
23GO:0004160: dihydroxy-acid dehydratase activity5.95E-04
24GO:0015929: hexosaminidase activity1.28E-03
25GO:0004563: beta-N-acetylhexosaminidase activity1.28E-03
26GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.28E-03
27GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.28E-03
28GO:0009884: cytokinin receptor activity1.28E-03
29GO:0035241: protein-arginine omega-N monomethyltransferase activity1.28E-03
30GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.28E-03
31GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.28E-03
32GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.09E-03
33GO:0008469: histone-arginine N-methyltransferase activity2.11E-03
34GO:0070330: aromatase activity2.11E-03
35GO:0032549: ribonucleoside binding2.11E-03
36GO:0017150: tRNA dihydrouridine synthase activity2.11E-03
37GO:0042781: 3'-tRNA processing endoribonuclease activity2.11E-03
38GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.11E-03
39GO:0005034: osmosensor activity2.11E-03
40GO:0005262: calcium channel activity2.51E-03
41GO:0004650: polygalacturonase activity2.65E-03
42GO:0035197: siRNA binding3.06E-03
43GO:0043023: ribosomal large subunit binding3.06E-03
44GO:0004845: uracil phosphoribosyltransferase activity4.12E-03
45GO:0004345: glucose-6-phosphate dehydrogenase activity4.12E-03
46GO:0016836: hydro-lyase activity4.12E-03
47GO:0005253: anion channel activity4.12E-03
48GO:0019199: transmembrane receptor protein kinase activity4.12E-03
49GO:0042277: peptide binding4.12E-03
50GO:0046556: alpha-L-arabinofuranosidase activity4.12E-03
51GO:0016279: protein-lysine N-methyltransferase activity4.12E-03
52GO:0019843: rRNA binding4.30E-03
53GO:0004176: ATP-dependent peptidase activity4.78E-03
54GO:0008725: DNA-3-methyladenine glycosylase activity5.30E-03
55GO:0004372: glycine hydroxymethyltransferase activity5.30E-03
56GO:0018685: alkane 1-monooxygenase activity5.30E-03
57GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.30E-03
58GO:0004185: serine-type carboxypeptidase activity5.99E-03
59GO:0003727: single-stranded RNA binding6.23E-03
60GO:0005247: voltage-gated chloride channel activity6.57E-03
61GO:0030983: mismatched DNA binding6.57E-03
62GO:0004605: phosphatidate cytidylyltransferase activity6.57E-03
63GO:1990714: hydroxyproline O-galactosyltransferase activity6.57E-03
64GO:0004332: fructose-bisphosphate aldolase activity6.57E-03
65GO:0004812: aminoacyl-tRNA ligase activity6.76E-03
66GO:0004124: cysteine synthase activity7.94E-03
67GO:0008195: phosphatidate phosphatase activity7.94E-03
68GO:0004849: uridine kinase activity7.94E-03
69GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.94E-03
70GO:0004656: procollagen-proline 4-dioxygenase activity7.94E-03
71GO:0019900: kinase binding7.94E-03
72GO:0000150: recombinase activity9.40E-03
73GO:0016762: xyloglucan:xyloglucosyl transferase activity9.76E-03
74GO:0000400: four-way junction DNA binding1.10E-02
75GO:0043022: ribosome binding1.10E-02
76GO:0004520: endodeoxyribonuclease activity1.10E-02
77GO:0008173: RNA methyltransferase activity1.26E-02
78GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.26E-02
79GO:0005375: copper ion transmembrane transporter activity1.26E-02
80GO:0008168: methyltransferase activity1.29E-02
81GO:0004674: protein serine/threonine kinase activity1.33E-02
82GO:0004672: protein kinase activity1.41E-02
83GO:0008889: glycerophosphodiester phosphodiesterase activity1.43E-02
84GO:0016798: hydrolase activity, acting on glycosyl bonds1.67E-02
85GO:0030247: polysaccharide binding1.67E-02
86GO:0004673: protein histidine kinase activity1.80E-02
87GO:0004805: trehalose-phosphatase activity1.80E-02
88GO:0001054: RNA polymerase I activity2.00E-02
89GO:0004222: metalloendopeptidase activity2.05E-02
90GO:0004521: endoribonuclease activity2.20E-02
91GO:0003697: single-stranded DNA binding2.36E-02
92GO:0031072: heat shock protein binding2.41E-02
93GO:0000155: phosphorelay sensor kinase activity2.41E-02
94GO:0009982: pseudouridine synthase activity2.41E-02
95GO:0004565: beta-galactosidase activity2.41E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity2.41E-02
97GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.41E-02
98GO:0005524: ATP binding2.51E-02
99GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.63E-02
100GO:0004871: signal transducer activity2.65E-02
101GO:0051539: 4 iron, 4 sulfur cluster binding2.69E-02
102GO:0031418: L-ascorbic acid binding3.31E-02
103GO:0043424: protein histidine kinase binding3.56E-02
104GO:0005345: purine nucleobase transmembrane transporter activity3.56E-02
105GO:0008408: 3'-5' exonuclease activity3.80E-02
106GO:0008094: DNA-dependent ATPase activity3.80E-02
107GO:0035251: UDP-glucosyltransferase activity3.80E-02
108GO:0033612: receptor serine/threonine kinase binding3.80E-02
109GO:0003690: double-stranded DNA binding4.24E-02
110GO:0005215: transporter activity4.54E-02
111GO:0004601: peroxidase activity4.73E-02
112GO:0016788: hydrolase activity, acting on ester bonds4.83E-02
113GO:0018024: histone-lysine N-methyltransferase activity4.85E-02
114GO:0047134: protein-disulfide reductase activity4.85E-02
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Gene type



Gene DE type